ONTOLOGY REPORT - ANNOTATIONS
Term: immunoglobulin production
Accession: GO:0002377
browse the term
Definition: The appearance of immunoglobulin due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms.
Synonyms: exact_synonym: antibody production
narrow_synonym: immunoglobulin biosynthetic process; immunoglobulin secretion
alt_id: GO:0002378; GO:0048305
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Prkdc
protein kinase, DNA-activated, catalytic subunit
IMP
RGD
PMID:22981234
RGD:8696027
NCBI chr11:98,544,952...98,762,499
Ensembl chr11:85,040,792...85,257,952
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Btk
Bruton tyrosine kinase
acts_upstream_of_or_within
ISO
MGI:1856317 (PMID:7680896)
RGD
PMID:7680896
NCBI chr X:102,016,070...102,055,448
Ensembl chr X:97,722,802...97,761,853
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Traf3ip2
Traf3 interacting protein 2
involved_in
ISO
MGI:3510784 (PMID:20543113)
RGD
PMID:20543113
NCBI chr20:44,565,992...44,609,240
Ensembl chr20:43,011,450...43,054,667
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Polb
DNA polymerase beta
acts_upstream_of_or_within
ISO
MGI:5427084 (PMID:24388753)
RGD
PMID:24388753
NCBI chr16:76,081,903...76,105,174
Ensembl chr16:69,379,400...69,404,812
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Yy1
YY1 transcription factor
involved_in
ISO
MGI:3624790 (PMID:23531880)
RGD
PMID:23531880
NCBI chr 6:133,471,615...133,500,875
Ensembl chr 6:127,707,596...127,732,747
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Cyren
cell cycle regulator of NHEJ
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:30017584), (PMID:31795137) GO_REF:0000107
UniProt RGD Ensembl
PMID:30017584 PMID:31795137
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:64,514,477...64,519,896
Ensembl chr 4:63,547,335...63,551,602
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Foxp1
forkhead box P1
acts_upstream_of_or_within
ISO
MGI:3711150 (PMID:16819554)
RGD
PMID:16819554
NCBI chr 4:133,117,346...133,808,647
Ensembl chr 4:131,564,756...132,112,258
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Lig4
DNA ligase 4
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:1857732 (PMID:9823897)
GO_Central RGD
PMID:9823897
GO_REF:0000033
NCBI chr16:86,220,345...86,228,930
Ensembl chr16:79,518,312...79,527,040
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Nhej1
nonhomologous end-joining factor 1
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:20558749) GO_REF:0000024
Ensembl RGD UniProt
PMID:20558749
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:83,974,995...84,071,161
Ensembl chr 9:76,526,324...76,622,444
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Prkdc
protein kinase, DNA-activated, catalytic subunit
acts_upstream_of_or_within involved_in
ISO IBA
MGI:2383951 (PMID:9768755) GO_REF:0000033
RGD GO_Central
PMID:9768755
GO_REF:0000033
NCBI chr11:98,544,952...98,762,499
Ensembl chr11:85,040,792...85,257,952
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Tcf3
transcription factor 3
involved_in acts_upstream_of_or_within
IEA IBA ISO
GO_REF:0000107 GO_REF:0000033 MGI:2178112 (PMID:16428437)
Ensembl GO_Central RGD
PMID:16428437
GO_REF:0000033 GO_REF:0000107
NCBI chr 7:9,931,251...9,952,994
Ensembl chr 7:9,280,571...9,302,314
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Xrcc4
X-ray repair cross complementing 4
acts_upstream_of_or_within involved_in
ISO IBA
MGI:1926771 (PMID:9875844) GO_REF:0000033
RGD GO_Central
PMID:9875844
GO_REF:0000033
NCBI chr 2:22,686,506...22,932,929
Ensembl chr 2:20,951,200...21,197,808
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Aicda
activation-induced cytidine deaminase
involved_in acts_upstream_of_or_within
ISO
(PMID:21518874) (PMID:17713479)
RGD
PMID:17713479 PMID:21518874
NCBI chr 4:157,446,120...157,455,958
Ensembl chr 4:155,774,132...155,783,972
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Atad5
ATPase family, AAA domain containing 5
acts_upstream_of
ISO
MGI:4127920 (PMID:25404367)
RGD
PMID:25404367
NCBI chr10:65,568,569...65,616,379
Ensembl chr10:65,070,689...65,117,845
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Batf
basic leucine zipper ATF-like transcription factor
involved_in
ISS ISO
GO_REF:0000024 (PMID:20421391), (PMID:21572431)
UniProt RGD
PMID:20421391 PMID:21572431
GO_REF:0000024
NCBI chr 6:111,084,717...111,107,052
Ensembl chr 6:105,353,715...105,376,051
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Cd40lg
CD40 ligand
involved_in
IEA ISO
GO_REF:0000107 (PMID:7529792)
Ensembl RGD
PMID:7529792
GO_REF:0000107
NCBI chr X:140,164,341...140,176,057
Ensembl chr X:135,126,969...135,138,306
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Ercc1
ERCC excision repair 1, endonuclease non-catalytic subunit
acts_upstream_of_or_within
ISO
MGI:2183944 (PMID:15280420)
RGD
PMID:15280420
NCBI chr 1:88,099,308...88,135,966
Ensembl chr 1:78,996,390...79,007,963
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Exo1
exonuclease 1
acts_upstream_of_or_within
ISO
MGI:2653925 (PMID:14716311)
RGD
PMID:14716311
NCBI chr13:90,341,947...90,366,861
Ensembl chr13:87,809,810...87,834,654
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Exosc3
exosome component 3
involved_in
ISO
(PMID:21255825)
RGD
PMID:21255825
NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060
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Exosc6
exosome component 6
involved_in
ISO
(PMID:21255825)
RGD
PMID:21255825
NCBI chr19:55,931,523...55,932,937
Ensembl chr19:39,022,183...39,023,515
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Lig4
DNA ligase 4
acts_upstream_of_or_within
ISO
MGI:1857732 (PMID:17713479)
RGD
PMID:17713479
NCBI chr16:86,220,345...86,228,930
Ensembl chr16:79,518,312...79,527,040
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Mlh1
mutL homolog 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857946 (PMID:12743174)
Ensembl RGD
PMID:12743174
GO_REF:0000107
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
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Msh2
mutS homolog 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857940|MGI:2151801 (PMID:10430621), (PMID:12743174)
Ensembl RGD
PMID:10430621 PMID:12743174
GO_REF:0000107
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
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Msh6
mutS homolog 6
acts_upstream_of_or_within
ISO
MGI:109352|MGI:3653701 (PMID:16618598), (PMID:17015724)
RGD
PMID:16618598 PMID:17015724
NCBI chr 6:12,316,190...12,333,505
Ensembl chr 6:6,562,632...6,579,956
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Nbn
nibrin
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:15668383) GO_REF:0000024
Ensembl RGD UniProt
PMID:15668383
GO_REF:0000024 GO_REF:0000107
NCBI chr 5:34,256,678...34,291,163
Ensembl chr 5:29,459,457...29,494,150
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Nfkbiz
NFKB inhibitor zeta
involved_in
ISO
MGI:3046930|MGI:5501251 (PMID:25124037), (PMID:31182790)
RGD
PMID:25124037 PMID:31182790
NCBI chr11:58,251,720...58,279,767
Ensembl chr11:44,782,676...44,810,723
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Pcyt1a
phosphate cytidylyltransferase 1A, choline
involved_in
ISS ISO
GO_REF:0000024 (PMID:19139091)
UniProt RGD
PMID:19139091
GO_REF:0000024
NCBI chr11:81,818,914...81,862,623
Ensembl chr11:68,313,882...68,357,357
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Rnf168
ring finger protein 168
involved_in
ISO ISS
(PMID:20080757) GO_REF:0000024
RGD UniProt
PMID:20080757
GO_REF:0000024
NCBI chr11:81,991,352...82,013,306
Ensembl chr11:68,486,321...68,508,277
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Rnf8
ring finger protein 8
involved_in
ISO ISS
(PMID:20080757) GO_REF:0000024
RGD UniProt
PMID:20080757
GO_REF:0000024
NCBI chr20:7,683,890...7,708,437
Ensembl chr20:7,682,322...7,708,491
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Sanbr
SANT and BTB domain regulator of CSR
involved_in
IEA IBA ISS ISO
GO_REF:0000107 GO_REF:0000033 GO_REF:0000024 (PMID:33831416)
Ensembl GO_Central UniProt RGD
PMID:33831416
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr14:97,516,652...97,585,955
Ensembl chr14:97,516,413...97,581,346
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Swap70
switching B-cell complex subunit SWAP70
acts_upstream_of_or_within
ISO
(PMID:9642267)
RGD
PMID:9642267
NCBI chr 1:173,702,338...173,763,540
Ensembl chr 1:164,267,609...164,328,794
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Ung
uracil-DNA glycosylase
acts_upstream_of_or_within
ISO
MGI:1343961 (PMID:17015724)
RGD
PMID:17015724
NCBI chr12:48,145,838...48,154,789
Ensembl chr12:42,485,276...42,494,206
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Xrcc4
X-ray repair cross complementing 4
acts_upstream_of_or_within
ISO
MGI:1926771|MGI:3047571|MGI:3641440 (PMID:17713479)
RGD
PMID:17713479
NCBI chr 2:22,686,506...22,932,929
Ensembl chr 2:20,951,200...21,197,808
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Ccr6
C-C motif chemokine receptor 6
involved_in
ISO
(PMID:27174992)
RGD
PMID:27174992
NCBI chr 1:55,022,037...55,055,857
Ensembl chr 1:52,474,168...52,498,603
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Fdcsp
follicular dendritic cell secreted protein
acts_upstream_of_positive_effect
ISO
MGI:7719862 (PMID:17548624)
RGD
PMID:17548624
NCBI chr14:20,169,691...20,173,983
Ensembl chr14:20,169,691...20,173,983
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Bcl6
BCL6, transcription repressor
acts_upstream_of
ISO
MGI:103034|MGI:2158438 (PMID:10490661)
RGD
PMID:10490661
NCBI chr11:90,358,753...90,382,049
Ensembl chr11:76,854,090...76,877,389
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Fdcsp
follicular dendritic cell secreted protein
acts_upstream_of_or_within_negative_effect
ISO
MGI:7719862 (PMID:17548624)
RGD
PMID:17548624
NCBI chr14:20,169,691...20,173,983
Ensembl chr14:20,169,691...20,173,983
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Foxp3
forkhead box P3
acts_upstream_of
ISO
MGI:3696705 (PMID:16275384)
RGD
PMID:16275384
NCBI chr X:17,580,380...17,601,181
Ensembl chr X:14,908,494...14,923,838
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Il4
interleukin 4
acts_upstream_of
ISO
(PMID:14988498)
RGD
PMID:14988498
NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
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Stat6
signal transducer and activator of transcription 6
acts_upstream_of
ISO
MGI:107187 (PMID:10490661)
RGD
PMID:10490661
NCBI chr 7:65,365,505...65,382,825
Ensembl chr 7:63,479,642...63,498,495
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Fdcsp
follicular dendritic cell secreted protein
acts_upstream_of_or_within_negative_effect
ISO
MGI:7719862 (PMID:17548624)
RGD
PMID:17548624
NCBI chr14:20,169,691...20,173,983
Ensembl chr14:20,169,691...20,173,983
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Hspd1
heat shock protein family D (Hsp60) member 1
involved_in
ISO
(PMID:16148103)
RGD
PMID:16148103
NCBI chr 9:64,073,610...64,084,332
Ensembl chr 9:56,579,201...56,589,662
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Il4
interleukin 4
acts_upstream_of
ISO
(PMID:14988498)
RGD
PMID:14988498
NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
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Cd22
CD22 molecule
involved_in
ISO
UniProtKB:Q80ZE3 (PMID:20200274)
RGD
PMID:20200274
NCBI chr 1:95,243,785...95,270,430
Ensembl chr 1:86,117,459...86,132,322
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Fcgr2b
Fc gamma receptor 2B
acts_upstream_of_or_within
ISO
MGI:1857166 (PMID:12385742)
RGD
PMID:12385742
NCBI chr13:85,725,897...85,740,517
Ensembl chr13:83,193,163...83,207,778
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Ifnb1
interferon beta 1
IDA
RGD
PMID:10494101
RGD:401854240
NCBI chr 5:108,066,650...108,067,487
Ensembl chr 5:103,020,969...103,021,523
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Il13ra2
interleukin 13 receptor subunit alpha 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2653910 (PMID:15944273)
Ensembl RGD
PMID:15944273
GO_REF:0000107
NCBI chr X:115,814,620...115,886,080
Ensembl chr X:111,002,592...111,072,381
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Il33
interleukin 33
involved_in
ISO IEA
UniProtKB:P08226 (PMID:18268038) GO_REF:0000107
RGD Ensembl
PMID:18268038
GO_REF:0000107
NCBI chr 1:237,115,478...237,149,897
Ensembl chr 1:227,721,435...227,736,373
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Prkdc
protein kinase, DNA-activated, catalytic subunit
IMP
RGD
PMID:22981234
RGD:8696027
NCBI chr11:98,544,952...98,762,499
Ensembl chr11:85,040,792...85,257,952
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Siglec10
sialic acid binding Ig-like lectin 10
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 1:93,817,301...93,826,376
Ensembl chr 1:93,817,335...93,825,931
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Tmbim6
transmembrane BAX inhibitor motif containing 6
involved_in
ISO
(PMID:19328063)
RGD
PMID:19328063
NCBI chr 7:132,405,217...132,422,492
Ensembl chr 7:130,527,316...130,543,633
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Zpbp2
zona pellucida binding protein 2
acts_upstream_of_or_within
ISO
MGI:3762590 (PMID:29536159)
RGD
PMID:29536159
NCBI chr10:84,055,184...84,063,776
Ensembl chr10:83,559,016...83,567,508
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Parp3
poly (ADP-ribose) polymerase family, member 3
involved_in
ISO
(PMID:26000965)
RGD
PMID:26000965
NCBI chr 8:107,111,010...107,117,073
Ensembl chr 8:107,111,012...107,116,782
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Bcl6
BCL6, transcription repressor
acts_upstream_of_or_within
ISO
MGI:103034|MGI:2158438 (PMID:10490661)
RGD
PMID:10490661
NCBI chr11:90,358,753...90,382,049
Ensembl chr11:76,854,090...76,877,389
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Foxp3
forkhead box P3
acts_upstream_of_or_within
ISO
MGI:3696705 (PMID:16275384)
RGD
PMID:16275384
NCBI chr X:17,580,380...17,601,181
Ensembl chr X:14,908,494...14,923,838
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Ndfip1
Nedd4 family interacting protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3695433 (PMID:17137798)
Ensembl RGD
PMID:17137798
GO_REF:0000107
NCBI chr18:30,516,931...30,567,199
Ensembl chr18:30,250,613...30,322,311
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Btk
Bruton tyrosine kinase
IMP
RGD
PMID:28352114
RGD:151665126
NCBI chr X:102,016,070...102,055,448
Ensembl chr X:97,722,802...97,761,853
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Cd37
CD37 molecule
acts_upstream_of_or_within
ISO
MGI:2386160 (PMID:10891477)
RGD
PMID:10891477
NCBI chr 1:104,855,622...104,861,111
Ensembl chr 1:95,719,190...95,724,648
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Cd86
CD86 molecule
involved_in
ISO
(PMID:23241883)
RGD
PMID:23241883
NCBI chr11:77,647,565...77,706,178
Ensembl chr11:64,163,828...64,200,818
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Clcf1
cardiotrophin-like cytokine factor 1
involved_in
ISO
(PMID:12023368)
RGD
PMID:12023368
NCBI chr 1:210,937,763...210,947,064
Ensembl chr 1:201,507,859...201,517,605
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Dnajb9
DnaJ heat shock protein family (Hsp40) member B9
involved_in
ISO ISS
(PMID:25222125) GO_REF:0000024
RGD UniProt
PMID:25222125
GO_REF:0000024
NCBI chr 6:66,997,842...67,007,371
Ensembl chr 6:61,269,913...61,275,063
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Ephb2
Eph receptor B2
involved_in
ISO
(PMID:24803541)
RGD
PMID:24803541
NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059
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Foxp1
forkhead box P1
acts_upstream_of_or_within
ISO
MGI:3711150 (PMID:16819554)
RGD
PMID:16819554
NCBI chr 4:133,117,346...133,808,647
Ensembl chr 4:131,564,756...132,112,258
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Galnt2
polypeptide N-acetylgalactosaminyltransferase 2
involved_in
IEA ISO
GO_REF:0000107 (PMID:12438318)
Ensembl RGD
PMID:12438318
GO_REF:0000107
NCBI chr19:52,213,226...52,324,816
Ensembl chr19:52,213,351...52,324,813
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Gpi
glucose-6-phosphate isomerase
involved_in
ISO
(PMID:3020690)
RGD
PMID:3020690
NCBI chr 1:95,965,389...95,996,932
Ensembl chr 1:86,828,216...86,856,086
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Hpx
hemopexin
acts_upstream_of_or_within
ISO
MGI:2447193 (PMID:18641331)
RGD
PMID:18641331
NCBI chr 1:169,344,647...169,352,155
Ensembl chr 1:159,932,755...159,940,328
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Il10
interleukin 10
acts_upstream_of
ISO
UniProtKB:P60568 (PMID:22962438)
RGD
PMID:22962438
NCBI chr13:45,024,921...45,029,586
Ensembl chr13:42,472,839...42,477,313
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Il13
interleukin 13
acts_upstream_of_or_within involved_in
IDA ISO IBA
IgE production after infection MGI:1931804|MGI:96556 (PMID:15944273) GO_REF:0000033
RGD GO_Central
PMID:15944273 PMID:11573960
GO_REF:0000033, RGD:633067
NCBI chr10:38,290,926...38,293,483
Ensembl chr10:37,790,130...37,792,737
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Il13ra1
interleukin 13 receptor subunit alpha 1
involved_in
IDA IBA
IgE production after infection GO_REF:0000033
GO_Central RGD
PMID:11573960
GO_REF:0000033, RGD:633067
NCBI chr X:120,213,670...120,294,777
Ensembl chr X:115,348,860...115,408,681 Ensembl chr11:115,348,860...115,408,681
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Il13ra1-ps1
interleukin 13 receptor subunit alpha 1, pseudogene 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr11:71,255,035...71,258,723
Ensembl chr11:71,254,928...71,258,678
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Il2
interleukin 2
acts_upstream_of acts_upstream_of_or_within
ISO
UniProtKB:P22301 (PMID:22962438) MGI:1857191 (PMID:1830926)
RGD
PMID:1830926 PMID:22962438
NCBI chr 2:121,932,968...121,937,672
Ensembl chr 2:120,004,862...120,009,566
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Il21
interleukin 21
involved_in
ISS ISO
GO_REF:0000024 (PMID:23045607)
UniProt RGD
PMID:23045607
GO_REF:0000024
NCBI chr 2:122,045,240...122,055,142
Ensembl chr 2:120,119,444...120,126,996
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Il33
interleukin 33
involved_in
IEA ISO
GO_REF:0000107 UniProtKB:P08226 (PMID:18268038)
Ensembl RGD
PMID:18268038
GO_REF:0000107
NCBI chr 1:237,115,478...237,149,897
Ensembl chr 1:227,721,435...227,736,373
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Il4
interleukin 4
acts_upstream_of_or_within
ISO
MGI:1857195|MGI:96541 (PMID:15944273)
RGD
PMID:15944273
NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
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Il4r
interleukin 4 receptor
acts_upstream_of_or_within
ISO
MGI:1861951 (PMID:15944273)
RGD
PMID:15944273
NCBI chr 1:189,545,739...189,570,639
Ensembl chr 1:180,115,120...180,139,980
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Il5
interleukin 5
involved_in
ISO
UniProtKB:Q8BVZ5 (PMID:18268038)
RGD
PMID:18268038
NCBI chr10:38,375,132...38,378,003
Ensembl chr10:37,874,342...37,877,213
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Il6
interleukin 6
involved_in
ISO ISS
(PMID:23045607) (PMID:3491322) GO_REF:0000024
RGD UniProt
PMID:3491322 PMID:23045607
GO_REF:0000024
NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,213,394...5,219,178
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Mzb1
marginal zone B and B1 cell-specific protein
involved_in
ISS ISO
GO_REF:0000024 (PMID:19805154), (PMID:19805157)
UniProt RGD
PMID:19805154 PMID:19805157
GO_REF:0000024
NCBI chr18:27,513,087...27,515,148
Ensembl chr18:27,239,001...27,241,094
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Phb1
prohibitin 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:23241883)
UniProt RGD
PMID:23241883
GO_REF:0000024
NCBI chr10:81,102,043...81,114,815
Ensembl chr10:80,605,251...80,618,042
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Phb2
prohibitin 2
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:23241883)
UniProt Ensembl RGD
PMID:23241883
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:159,203,948...159,208,561
Ensembl chr 4:157,517,577...157,522,272
G
Ptprc
protein tyrosine phosphatase, receptor type, C
involved_in
ISO
(PMID:1793833)
RGD
PMID:1793833
NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692
G
Rbp4
retinol binding protein 4
involved_in
ISO
(PMID:10944490)
RGD
PMID:10944490
NCBI chr 1:245,306,349...245,313,551
Ensembl chr 1:235,893,917...235,901,399
G
RT1-A2
RT1 class Ia, locus A2
involved_in
ISO
(PMID:25631937)
RGD
PMID:25631937
NCBI chr20:4,872,720...4,876,425
G
Sash3
SAM and SH3 domain containing 3
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:3716944 (PMID:16227612)
GO_Central RGD
PMID:16227612
GO_REF:0000033
NCBI chr X:127,326,815...127,341,521
Ensembl chr X:127,326,859...127,341,519
G
Stx4
syntaxin 4
involved_in
ISO
(PMID:24055037)
RGD
PMID:24055037
NCBI chr 1:191,880,549...191,890,333
Ensembl chr 1:182,451,117...182,459,979
G
Tlr9
toll-like receptor 9
involved_in
ISO
(PMID:23857366)
RGD
PMID:23857366
NCBI chr 8:115,743,407...115,747,523
Ensembl chr 8:106,864,680...106,868,796
G
Tnf
tumor necrosis factor
IMP
RGD
PMID:23333565
RGD:7245573
NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,622,011...3,624,629
G
Tnfrsf4
TNF receptor superfamily member 4
involved_in
ISO
(PMID:7749983)
RGD
PMID:7749983
NCBI chr 5:171,889,134...171,891,824
Ensembl chr 5:166,606,909...166,609,599
G
Tnfsf4
TNF superfamily member 4
involved_in
ISO
(PMID:7749983)
RGD
PMID:7749983
NCBI chr13:76,256,654...76,280,133
Ensembl chr13:73,723,329...73,746,788
G
Vamp3
vesicle-associated membrane protein 3
NOT|involved_in
ISO
(PMID:24055037)
RGD
PMID:24055037
NCBI chr 5:166,780,927...166,791,522
Ensembl chr 5:161,498,109...161,508,751
G
Xbp1
X-box binding protein 1
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:12612580) GO_REF:0000107 (PMID:11460154)
UniProt RGD Ensembl
PMID:11460154 PMID:12612580
GO_REF:0000024 GO_REF:0000107
NCBI chr14:84,604,623...84,609,707
Ensembl chr14:80,390,643...80,395,693
G
C10h17orf99
similar to human chromosome 17 open reading frame 99
involved_in
ISO
(PMID:28978694)
RGD
PMID:28978694
NCBI chr10:103,514,067...103,526,132
Ensembl chr10:103,016,505...103,027,407
G
Xcl1
X-C motif chemokine ligand 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:9973465)
Ensembl RGD
PMID:9973465
GO_REF:0000107
NCBI chr13:79,781,784...79,785,440
Ensembl chr13:77,248,717...77,252,329
G
Tnfsf4
TNF superfamily member 4
involved_in
ISO
(PMID:12496423)
RGD
PMID:12496423
NCBI chr13:76,256,654...76,280,133
Ensembl chr13:73,723,329...73,746,788
G
Exosc3
exosome component 3
acts_upstream_of_or_within
ISO
(PMID:21255825)
RGD
PMID:21255825
NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060
G
Exosc6
exosome component 6
acts_upstream_of_or_within
ISO
(PMID:21255825)
RGD
PMID:21255825
NCBI chr19:55,931,523...55,932,937
Ensembl chr19:39,022,183...39,023,515
G
Hmces
5-hydroxymethylcytosine binding, ES cell specific
involved_in
ISS ISO
GO_REF:0000024 (PMID:31806351)
UniProt RGD
PMID:31806351
GO_REF:0000024
NCBI chr 4:121,950,129...121,972,937
Ensembl chr 4:120,366,542...120,415,616
G
Kmt5b
lysine methyltransferase 5B
involved_in
ISS ISO
GO_REF:0000024 (PMID:28114273)
UniProt RGD
PMID:28114273
GO_REF:0000024
NCBI chr 1:210,429,672...210,479,042
Ensembl chr 1:201,000,444...201,049,819
G
Kmt5c
lysine methyltransferase 5C
involved_in
ISS ISO
GO_REF:0000024 (PMID:28114273)
UniProt RGD
PMID:28114273
GO_REF:0000024
NCBI chr 1:69,099,531...69,107,145
Ensembl chr 1:69,099,539...69,107,145
G
Mad2l2
mitotic arrest deficient 2 like 2
involved_in
ISO
(PMID:29656893)
RGD
PMID:29656893
NCBI chr 5:163,846,678...163,859,851
Ensembl chr 5:158,563,567...158,576,693
G
Paxip1
PAX interacting protein 1
involved_in
ISO
(PMID:20671152)
RGD
PMID:20671152
NCBI chr 4:8,258,930...8,310,490
Ensembl chr 4:7,525,004...7,576,548
G
Rif1
replication timing regulatory factor 1
involved_in
ISO
(PMID:23306439), (PMID:23333305), (PMID:23333306)
RGD
PMID:23306439 PMID:23333305 PMID:23333306
NCBI chr 3:36,554,689...36,607,961
Ensembl chr 3:36,554,697...36,603,617
G
Shld1
shieldin complex subunit 1
involved_in
ISO IBA
(PMID:29656893) GO_REF:0000033
RGD GO_Central
PMID:29656893
GO_REF:0000033
NCBI chr 3:119,938,695...120,011,068
Ensembl chr 3:119,938,833...120,009,550
G
Shld2
shieldin complex subunit 2
involved_in
ISO
(PMID:29656893)
RGD
PMID:29656893
NCBI chr16:9,544,940...9,640,323
Ensembl chr16:9,548,660...9,639,965
G
Shld3
shieldin complex subunit 3
involved_in
ISO IBA
(PMID:29656893) GO_REF:0000033
RGD GO_Central
PMID:29656893
GO_REF:0000033
NCBI chr 2:35,297,255...35,302,071
Ensembl chr 2:35,295,859...35,302,346
G
Tfrc
transferrin receptor
involved_in
ISS ISO
GO_REF:0000024 (PMID:26642240)
UniProt RGD
PMID:26642240
GO_REF:0000024
NCBI chr11:81,668,478...81,690,318
Ensembl chr11:68,163,413...68,185,257
G
Tp53bp1
tumor protein p53 binding protein 1
involved_in
ISO
(PMID:15077110), (PMID:15159415) (PMID:23345425), (PMID:23760478)
RGD
PMID:15077110 PMID:15159415 PMID:23345425 PMID:23760478
NCBI chr 3:128,620,320...128,724,716
Ensembl chr 3:108,169,980...108,269,822
G
Mlh1
mutL homolog 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:10430621)
Ensembl RGD
PMID:10430621
GO_REF:0000107
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
G
Msh2
mutS homolog 2
involved_in
ISO IEA
(PMID:10430621) GO_REF:0000107
RGD Ensembl
PMID:10430621
GO_REF:0000107
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
G
Nsd2
nuclear receptor binding SET domain protein 2
acts_upstream_of_or_within
ISO
(PMID:23241889)
RGD
PMID:23241889
NCBI chr14:81,057,727...81,135,866
Ensembl chr14:76,835,637...76,913,641
G
Pms2
PMS1 homolog 2, mismatch repair system component
involved_in
ISO
UniProtKB:Q9JK91 (PMID:10430621)
RGD
PMID:10430621
NCBI chr12:15,790,478...15,814,790
Ensembl chr12:10,676,764...10,701,066
G
Tgfb1
transforming growth factor, beta 1
acts_upstream_of_or_within involved_in
ISO ISS
(PMID:14988498) GO_REF:0000024
RGD AgBase
PMID:14988498
GO_REF:0000024
NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847
G
Tnfsf13
TNF superfamily member 13
acts_upstream_of_or_within involved_in
ISO IBA
(PMID:14988498) MGI:3038886 (PMID:14988498) GO_REF:0000033
RGD GO_Central
PMID:14988498
GO_REF:0000033
NCBI chr10:54,898,805...54,901,815
Ensembl chr10:54,400,065...54,403,042
G
Clcf1
cardiotrophin-like cytokine factor 1
involved_in
ISO
(PMID:12023368)
RGD
PMID:12023368
NCBI chr 1:210,937,763...210,947,064
Ensembl chr 1:201,507,859...201,517,605
G
Il4
interleukin 4
acts_upstream_of_or_within
ISO
(PMID:14988498)
RGD
PMID:14988498
NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
G
Stat6
signal transducer and activator of transcription 6
acts_upstream_of_or_within
ISO
MGI:107187 (PMID:10490661)
RGD
PMID:10490661
NCBI chr 7:65,365,505...65,382,825
Ensembl chr 7:63,479,642...63,498,495
G
Atad5
ATPase family, AAA domain containing 5
acts_upstream_of_or_within
ISO
MGI:4127920 (PMID:25404367)
RGD
PMID:25404367
NCBI chr10:65,568,569...65,616,379
Ensembl chr10:65,070,689...65,117,845
G
Cd28
Cd28 molecule
acts_upstream_of_or_within
ISO
MGI:1857150 (PMID:7688139)
RGD
PMID:7688139
NCBI chr 9:69,660,316...69,689,192
Ensembl chr 9:62,166,192...62,194,685
G
Cd40
CD40 molecule
acts_upstream_of_or_within
ISO
(PMID:12882831)
RGD
PMID:12882831
NCBI chr 3:174,209,113...174,224,592
Ensembl chr 3:153,790,449...153,805,534
G
Ifng
interferon gamma
acts_upstream_of_or_within
ISO
(PMID:12882831)
RGD
PMID:12882831
NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:53,903,337...53,907,375
G
Il2
interleukin 2
acts_upstream_of_or_within
ISO
MGI:1857191 (PMID:1830926)
RGD
PMID:1830926
NCBI chr 2:121,932,968...121,937,672
Ensembl chr 2:120,004,862...120,009,566
G
Il4
interleukin 4
acts_upstream_of_or_within
ISO
(PMID:12882831), (PMID:14988498)
RGD
PMID:12882831 PMID:14988498
NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
G
Mlh1
mutL homolog 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:10430621)
Ensembl RGD
PMID:10430621
GO_REF:0000107
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
G
Msh2
mutS homolog 2
involved_in
IEA ISO
GO_REF:0000107 (PMID:10430621)
Ensembl RGD
PMID:10430621
GO_REF:0000107
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
G
Pagr1
Paxip1-associated glutamate-rich protein 1
involved_in
ISO
(PMID:26744420)
RGD
PMID:26744420
NCBI chr 1:191,053,228...191,055,554
G
Paxip1
PAX interacting protein 1
involved_in
ISO
(PMID:26744420)
RGD
PMID:26744420
NCBI chr 4:8,258,930...8,310,490
Ensembl chr 4:7,525,004...7,576,548
G
Pms2
PMS1 homolog 2, mismatch repair system component
involved_in
ISO
UniProtKB:Q9JK91 (PMID:10430621)
RGD
PMID:10430621
NCBI chr12:15,790,478...15,814,790
Ensembl chr12:10,676,764...10,701,066
G
Ptprc
protein tyrosine phosphatase, receptor type, C
acts_upstream_of_or_within
ISO
MGI:2181288 (PMID:9015183)
RGD
PMID:9015183
NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692
G
Tbx21
T-box transcription factor 21
acts_upstream_of_or_within
ISO
MGI:2180194 (PMID:12882831)
RGD
PMID:12882831
NCBI chr10:82,578,751...82,595,253
Ensembl chr10:82,082,322...82,098,831
G
Cd40
CD40 molecule
acts_upstream_of_or_within
ISO
(PMID:12958312)
RGD
PMID:12958312
NCBI chr 3:174,209,113...174,224,592
Ensembl chr 3:153,790,449...153,805,534
G
Cd40lg
CD40 ligand
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:12958312)
Ensembl RGD
PMID:12958312
GO_REF:0000107
NCBI chr X:140,164,341...140,176,057
Ensembl chr X:135,126,969...135,138,306
G
Cgas
cyclic GMP-AMP synthase
acts_upstream_of_or_within
ISO
MGI:1328317 (PMID:26371324)
RGD
PMID:26371324
NCBI chr 8:88,172,559...88,187,538
Ensembl chr 8:79,294,511...79,305,496
G
Foxp3
forkhead box P3
acts_upstream_of_or_within
ISO
MGI:3696705 (PMID:16275384)
RGD
PMID:16275384
NCBI chr X:17,580,380...17,601,181
Ensembl chr X:14,908,494...14,923,838
G
Pkn1
protein kinase N1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:5475202 (PMID:23223530)
Ensembl RGD
PMID:23223530
GO_REF:0000107
NCBI chr19:24,442,130...24,470,107
Ensembl chr19:24,442,122...24,470,107
G
Tnf
tumor necrosis factor
acts_upstream_of_or_within
ISO
(PMID:12958312)
RGD
PMID:12958312
NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,622,011...3,624,629
G
Traf2
Tnf receptor-associated factor 2
acts_upstream_of_or_within
ISO
(PMID:12958312)
RGD
PMID:12958312
NCBI chr 3:28,740,098...28,764,752
Ensembl chr 3:8,341,951...8,366,538
G
Traf6
TNF receptor associated factor 6
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:12958312)
Ensembl RGD
PMID:12958312
GO_REF:0000107
NCBI chr 3:108,418,537...108,443,330
Ensembl chr 3:87,963,514...87,983,507
G
Trex1
three prime repair exonuclease 1
acts_upstream_of_or_within
ISO
MGI:2442261 (PMID:26320659), (PMID:26371324)
RGD
PMID:26320659 PMID:26371324
NCBI chr 8:118,585,082...118,586,382
Ensembl chr 8:109,706,613...109,708,796
G
Aplf
aprataxin and PNKP like factor
acts_upstream_of_or_within
ISO
MGI:4128102 (PMID:21211721)
RGD
PMID:21211721
NCBI chr 4:121,627,800...121,679,980
Ensembl chr 4:120,070,471...120,122,633
G
Mir181b1
microRNA 181b-1
acts_upstream_of_or_within
ISO
(PMID:18762567)
RGD
PMID:18762567
NCBI chr13:52,037,228...52,037,337
Ensembl chr13:49,485,688...49,485,797
G
Mir181b2
microRNA 181b-2
acts_upstream_of_or_within
ISO
(PMID:18762567)
RGD
PMID:18762567
NCBI chr 3:43,026,666...43,026,753
Ensembl chr 3:22,616,948...22,617,035
G
Supt6h
SPT6 homolog, histone chaperone and transcription elongation factor
involved_in
ISO
(PMID:21518874)
RGD
PMID:21518874
NCBI chr10:63,601,990...63,638,851
Ensembl chr10:63,103,921...63,140,780
G
Foxp3
forkhead box P3
acts_upstream_of_or_within
ISO
MGI:3696705 (PMID:16275384)
RGD
PMID:16275384
NCBI chr X:17,580,380...17,601,181
Ensembl chr X:14,908,494...14,923,838
G
Il27ra
interleukin 27 receptor subunit alpha
acts_upstream_of_or_within
ISO
MGI:3525439 (PMID:11057672)
RGD
PMID:11057672
NCBI chr19:41,014,730...41,026,740
Ensembl chr19:24,109,972...24,121,938
G
Ndfip1
Nedd4 family interacting protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3695433 (PMID:17137798)
Ensembl RGD
PMID:17137798
GO_REF:0000107
NCBI chr18:30,516,931...30,567,199
Ensembl chr18:30,250,613...30,322,311
G
Slc15a4
solute carrier family 15 member 4
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:25310967) GO_REF:0000024
Ensembl RGD UniProt
PMID:25310967
GO_REF:0000024 GO_REF:0000107
NCBI chr12:34,684,583...34,718,429
Ensembl chr12:29,063,015...29,082,480
G
Aicda
activation-induced cytidine deaminase
involved_in
ISO
(PMID:18722174)
RGD
PMID:18722174
NCBI chr 4:157,446,120...157,455,958
Ensembl chr 4:155,774,132...155,783,972
G
Ctnnbl1
catenin, beta like 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:18722174)
Ensembl RGD
PMID:18722174
GO_REF:0000107
NCBI chr 3:166,807,899...166,968,932
Ensembl chr 3:146,387,889...146,548,987
G
Polb
DNA polymerase beta
acts_upstream_of_or_within
ISO
MGI:5427084 (PMID:24388753)
RGD
PMID:24388753
NCBI chr16:76,081,903...76,105,174
Ensembl chr16:69,379,400...69,404,812
G
Aicda
activation-induced cytidine deaminase
involved_in
ISO
(PMID:21518874)
RGD
PMID:21518874
NCBI chr 4:157,446,120...157,455,958
Ensembl chr 4:155,774,132...155,783,972
G
Exo1
exonuclease 1
acts_upstream_of_or_within
ISO
MGI:2653925 (PMID:14716311)
RGD
PMID:14716311
NCBI chr13:90,341,947...90,366,861
Ensembl chr13:87,809,810...87,834,654
G
Hmces
5-hydroxymethylcytosine binding, ES cell specific
involved_in
ISO ISS
(PMID:35450882) GO_REF:0000024
RGD UniProt
PMID:35450882
GO_REF:0000024
NCBI chr 4:121,950,129...121,972,937
Ensembl chr 4:120,366,542...120,415,616
G
Mcm3ap
minichromosome maintenance complex component 3 associated protein
involved_in
ISO
(PMID:23652018)
RGD
PMID:23652018
NCBI chr20:12,127,570...12,165,165
Ensembl chr20:12,127,570...12,165,165
G
Mlh1
mutL homolog 1
involved_in acts_upstream_of_or_within
IEA IBA ISO
GO_REF:0000107 GO_REF:0000033 MGI:1857946 (PMID:10092760), (PMID:10429667)
Ensembl GO_Central RGD
PMID:10092760 PMID:10429667
GO_REF:0000033 GO_REF:0000107
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
G
Msh2
mutS homolog 2
involved_in NOT|acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1858055 (PMID:9607915) MGI:109352|MGI:1857940|MGI:1858055|MGI:2680817 (PMID:14568978), (PMID:15494304), (PMID:9607916), (PMID:9697842), (PMID:9697843)
Ensembl RGD
PMID:9607915 PMID:9607916 PMID:9697842 PMID:9697843 PMID:14568978 PMID:15494304 More...
GO_REF:0000107
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
G
Msh3
mutS homolog 3
NOT|acts_upstream_of_or_within
ISO
MGI:1858056 (PMID:10662804)
RGD
PMID:10662804
NCBI chr 2:25,179,400...25,320,857
G
Msh6
mutS homolog 6
acts_upstream_of_or_within
ISO
MGI:1858014|MGI:3653701 (PMID:10662804), (PMID:15238604), (PMID:16618598), (PMID:17015724)
RGD
PMID:10662804 PMID:15238604 PMID:16618598 PMID:17015724
NCBI chr 6:12,316,190...12,333,505
Ensembl chr 6:6,562,632...6,579,956
G
Nuggc
nuclear GTPase, germinal center associated
acts_upstream_of_or_within
ISO
MGI:5449552 (PMID:22833677)
RGD
PMID:22833677
NCBI chr15:43,997,446...44,041,716
Ensembl chr15:39,821,855...39,866,122
G
Pms2
PMS1 homolog 2, mismatch repair system component
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:1857947 (PMID:10429667) (PMID:9618520)
GO_Central RGD
PMID:9618520 PMID:10429667
GO_REF:0000033
NCBI chr12:15,790,478...15,814,790
Ensembl chr12:10,676,764...10,701,066
G
Polb
DNA polymerase beta
acts_upstream_of_or_within
ISO
MGI:5427084 (PMID:24388753)
RGD
PMID:24388753
NCBI chr16:76,081,903...76,105,174
Ensembl chr16:69,379,400...69,404,812
G
Polm
DNA polymerase mu
acts_upstream_of_or_within
ISO
MGI:2179233 (PMID:15789338)
RGD
PMID:15789338
NCBI chr14:84,921,039...84,930,649
Ensembl chr14:80,706,345...80,717,086
G
Polq
DNA polymerase theta
involved_in
ISO
(PMID:16172387), (PMID:16222339), (PMID:16890500)
RGD
PMID:16172387 PMID:16222339 PMID:16890500
NCBI chr11:77,179,190...77,281,270
Ensembl chr11:63,673,816...63,775,878
G
Samhd1
SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1
involved_in
ISO
(PMID:29669924)
RGD
PMID:29669924
NCBI chr 3:166,179,742...166,214,448
Ensembl chr 3:145,761,558...145,794,386
G
Ung
uracil-DNA glycosylase
acts_upstream_of_or_within
ISO
MGI:101816|MGI:2182610 (PMID:15494304), (PMID:17015724)
RGD
PMID:15494304 PMID:17015724
NCBI chr12:48,145,838...48,154,789
Ensembl chr12:42,485,276...42,494,206
G
Mlh1
mutL homolog 1
acts_upstream_of_or_within
ISO
MGI:1857946 (PMID:11828012)
RGD
PMID:11828012
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
G
Msh2
mutS homolog 2
acts_upstream_of_or_within
ISO
MGI:109352|MGI:1857940|MGI:2151801|MGI:2680817 (PMID:11828012), (PMID:14563316), (PMID:14568978), (PMID:15494304), (PMID:15955838)
RGD
PMID:11828012 PMID:14563316 PMID:14568978 PMID:15494304 PMID:15955838
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
G
Msh3
mutS homolog 3
acts_upstream_of_or_within
ISO
MGI:1858056 (PMID:15238604)
RGD
PMID:15238604
NCBI chr 2:25,179,400...25,320,857
G
Msh6
mutS homolog 6
acts_upstream_of_or_within
ISO
MGI:1858014 (PMID:15238604)
RGD
PMID:15238604
NCBI chr 6:12,316,190...12,333,505
Ensembl chr 6:6,562,632...6,579,956
G
Pms2
PMS1 homolog 2, mismatch repair system component
acts_upstream_of_or_within
ISO
MGI:1857947 (PMID:11828012)
RGD
PMID:11828012
NCBI chr12:15,790,478...15,814,790
Ensembl chr12:10,676,764...10,701,066
G
Ung
uracil-DNA glycosylase
acts_upstream_of_or_within
ISO
MGI:101816|MGI:2182610 (PMID:15494304)
RGD
PMID:15494304
NCBI chr12:48,145,838...48,154,789
Ensembl chr12:42,485,276...42,494,206
G
Mlh1
mutL homolog 1
acts_upstream_of_or_within
ISO
MGI:101816 (PMID:12743174)
RGD
PMID:12743174
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
G
Msh2
mutS homolog 2
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:101938 (PMID:12743174)
GO_Central RGD
PMID:12743174
GO_REF:0000033
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all