Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:organ or tissue specific immune response
go back to main search page
Accession:GO:0002251 term browser browse the term
Definition:An immune response taking place in an organ or tissues such as the liver, brain, mucosa, or nervous system tissues.
Synonyms:exact_synonym: immune response in organ or tissue

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
organ or tissue specific immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:20702729) MGI PMID:20702729 NCBI chr25:32,557,697...32,744,763 JBrowse link
G TREX1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (PMID:24218451) MGI PMID:24218451 NCBI chr22:9,869,502...9,871,659 JBrowse link
G UMOD uromodulin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:18,620,927...18,641,312
Ensembl chr 5:18,619,895...18,638,719 		JBrowse link
antigen transcytosis by M cells in mucosal-associated lymphoid tissue term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GP2 glycoprotein 2 acts_upstream_of_or_within ISO (PMID:19907495) MGI PMID:19907495 NCBI chr 5:18,599,038...18,615,895
Ensembl chr 5:18,596,144...18,615,401 		JBrowse link
hepatic immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL6 interleukin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:35,577,513...35,582,385
Ensembl chr21:35,577,939...35,582,237 		JBrowse link
immune response in brain or nervous system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TREX1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (PMID:24218451) MGI PMID:24218451 NCBI chr22:9,869,502...9,871,659 JBrowse link
immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIGR polymeric immunoglobulin receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:22,409,723...22,427,894
Ensembl chr25:22,409,999...22,427,949 		JBrowse link
G RAB17 RAB17, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:123,579,771...123,603,355
Ensembl chr10:123,580,621...123,594,374 		JBrowse link
innate immune response in mucosa term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOA4 apolipoprotein A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:108,186,627...108,190,508
Ensembl chr 1:108,186,921...108,189,698 		JBrowse link
G BPIFB1 BPI fold containing family B member 1 involved_in ISO (PMID:21900486) UniProt PMID:21900486 NCBI chr 2:37,612,111...37,638,397 JBrowse link
G BPIFB1 BPI fold containing family B member 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 2:37,615,068...37,633,307 JBrowse link
G CAMP cathelicidin antimicrobial peptide involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:9,610,180...9,618,629
Ensembl chr22:9,610,298...9,613,016 		JBrowse link
G CLDN2 claudin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:94,752,552...94,762,247 JBrowse link
G DEFA1 defensin alpha 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:6,773,316...6,778,688 JBrowse link
G DEFA4 defensin alpha 4 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 8:6,711,001...6,728,930 JBrowse link
G DEFA5 defensin alpha 5 involved_in IEA TreeGrafter GO_REF:0000118
G DEFA6 defensin alpha 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:6,700,091...6,702,445
Ensembl chr 8:6,700,091...6,701,547 		JBrowse link
G DEFB1 defensin beta 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:6,643,753...6,652,209
Ensembl chr 8:6,643,556...6,651,699 		JBrowse link
G FAU FAU ubiquitin like and ribosomal protein S30 fusion involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:9,106,708...9,108,284
Ensembl chr 1:9,106,252...9,109,304 		JBrowse link
G HIST1H2BO histone cluster 1, H2bo involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr17:44,638,972...44,639,454
Ensembl chr17:44,639,024...44,639,401 		JBrowse link
G HIST2H2BE histone cluster 2 H2B family member e involved_in IEA Ensembl GO_REF:0000107
G HIST3H2BB histone cluster 3, H2bb involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr25:1,278,398...1,279,218
Ensembl chr25:1,278,820...1,279,200 		JBrowse link
G IL4 interleukin 4 involved_in ISO (PMID:9973465) BHF-UCL PMID:9973465 NCBI chr23:35,492,158...35,501,349
Ensembl chr23:35,492,939...35,501,258 		JBrowse link
G LOC103221937 histone H2B type 1-M involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr17:44,715,875...44,716,426
Ensembl chr17:44,715,922...44,716,299 		JBrowse link
G LOC103221969 histone H2B type 1-J involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:45,377,746...45,383,980
Ensembl chr17:45,377,815...45,378,192 		JBrowse link
G LOC103221972 histone H2B type 1-K involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr17:45,363,038...45,371,506
Ensembl chr17:45,363,109...45,363,486 		JBrowse link
G LOC103222001 histone H2B type 1-C/E/F/G/I involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr17:46,035,117...46,035,587
Ensembl chr17:46,132,622...46,132,999 		JBrowse link
G LOC103222019 histone H2B type 1-B involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr17:46,211,585...46,222,696
Ensembl chr17:46,211,652...46,212,029 		JBrowse link
G LOC103247165 histone H2B type 2-F involved_in ISO (PMID:12860195) UniProt PMID:12860195
G LTF lactotransferrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:7,867,332...7,896,403
Ensembl chr22:7,867,286...7,894,521 		JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 acts_upstream_of_or_within ISO (PMID:15692051) MGI PMID:15692051 NCBI chr 5:36,492,158...36,531,766
Ensembl chr 5:36,496,414...36,530,499 		JBrowse link
G PLA2G1B phospholipase A2 group IB involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:115,670,353...115,677,003
Ensembl chr11:115,670,344...115,677,080 		JBrowse link
G RNASE2 ribonuclease A family member 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:21,411,633...21,412,723
Ensembl chr29:21,412,062...21,412,544 		JBrowse link
G RPL39 ribosomal protein L39 involved_in ISO (PMID:12860195) UniProt PMID:12860195
mucosal immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD160 CD160 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:13,009,168...13,029,766
Ensembl chr20:13,012,460...13,020,466 		JBrowse link
G EPG5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:34,946,778...35,065,449
Ensembl chr18:34,946,796...35,060,595 		JBrowse link
G FDCSP follicular dendritic cell secreted protein involved_in ISO (PMID:24399151) MGI PMID:24399151 NCBI chr 7:18,711,145...18,721,926
Ensembl chr 7:18,716,973...18,721,350 		JBrowse link
G FFAR2 free fatty acid receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:30,375,607...30,379,479
Ensembl chr 6:30,377,427...30,378,419 		JBrowse link
G FFAR3 free fatty acid receptor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:30,296,020...30,306,671 JBrowse link
G IFNL3 interferon lambda 3 involved_in ISO (PMID:21518880) UniProt PMID:21518880 NCBI chr 6:33,843,140...33,845,444 JBrowse link
G IFNLR1 interferon lambda receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:108,501,255...108,534,845
Ensembl chr20:108,502,050...108,531,866 		JBrowse link
G OTUD7B OTU deubiquitinase 7B involved_in IEA Ensembl GO_REF:0000107
positive regulation of immunoglobulin production in mucosal tissue term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUNH17orf99 chromosome unknown C17orf99 homolog involved_in ISO (PMID:28978694) UniProt PMID:28978694 NCBI chr16:70,172,850...70,178,358 JBrowse link
G XCL1 X-C motif chemokine ligand 1 involved_in ISO (PMID:9973465) BHF-UCL PMID:9973465
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19829
    response to stimulus 8873
      immune response 1749
        organ or tissue specific immune response 43
          hepatic immune response 1
          immune response in brain or nervous system 1
          mucosal immune response + 39
paths to the root