Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:organ or tissue specific immune response
go back to main search page
Accession:GO:0002251 term browser browse the term
Definition:An immune response taking place in an organ or tissues such as the liver, brain, mucosa, or nervous system tissues.
Synonyms:exact_synonym: immune response in organ or tissue


show annotations for term's descendants           Sort by:
organ or tissue specific immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:20702729) MGI PMID:20702729 NCBI chr38:2,878,677...2,956,226 JBrowse link
G TREX1 three prime repair exonuclease 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:40,624,845...40,626,840
Ensembl chr20:40,624,891...40,626,906 		JBrowse link
G UMOD uromodulin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:24,991,459...25,006,735
Ensembl chr 6:24,991,459...25,006,735 		JBrowse link
antigen transcytosis by M cells in mucosal-associated lymphoid tissue term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GP2 glycoprotein 2 acts_upstream_of_or_within ISS UniProt GO_REF:0000024 NCBI chr 6:25,010,847...25,027,339
Ensembl chr 6:25,010,847...25,027,339 		JBrowse link
hepatic immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL6 interleukin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:36,474,268...36,478,519
Ensembl chr14:36,473,394...36,478,519 		JBrowse link
immune response in brain or nervous system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TREX1 three prime repair exonuclease 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:40,624,845...40,626,840
Ensembl chr20:40,624,891...40,626,906 		JBrowse link
immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIGR polymeric immunoglobulin receptor involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:6,070,407...6,087,605
Ensembl chr 7:6,070,407...6,087,605 		JBrowse link
G RAB17 RAB17, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:48,181,557...48,220,729
Ensembl chr25:48,188,085...48,203,149 		JBrowse link
innate immune response in mucosa term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOA4 apolipoprotein A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:16,751,588...16,754,215
Ensembl chr 5:16,751,799...16,754,837 		JBrowse link
G BPIFB1 BPI fold containing family B member 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr24:22,510,890...22,531,338
Ensembl chr24:22,511,060...22,531,292 		JBrowse link
G CAMP cathelicidin antimicrobial peptide involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:40,790,823...40,792,781
Ensembl chr20:40,790,811...40,792,794 		JBrowse link
G CLDN2 claudin 2 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:80,456,313...80,491,944
Ensembl chr  X:80,483,333...80,530,012 		JBrowse link
G CLDN2 claudin 2 involved_in IEA Ensembl GO_REF:0000107
G DEFB1 defensin beta 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:58,871,018...58,881,592
Ensembl chr16:58,871,018...58,881,592 		JBrowse link
G FAU FAU ubiquitin like and ribosomal protein S30 fusion involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:52,072,705...52,074,337
Ensembl chr18:52,072,796...52,074,336 		JBrowse link
G H2BC11 H2B clustered histone 11 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr35:24,540,629...24,543,786 JBrowse link
G H2BC12 H2B clustered histone 12 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr35:24,556,368...24,558,216
Ensembl chr35:24,557,784...24,558,164 		JBrowse link
G H2BC13 H2B clustered histone 13 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr35:24,999,666...25,000,124
Ensembl chr35:24,999,692...25,000,072 		JBrowse link
G H2BC14 H2B clustered histone 14 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr35:25,006,472...25,035,326
Ensembl chr35:25,006,510...25,006,890 		JBrowse link
G H2BC15 H2B clustered histone 15 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr35:25,031,173...25,035,326
Ensembl chr35:25,031,264...25,031,644 		JBrowse link
G H2BC17 H2B clustered histone 17 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr35:25,061,528...25,061,981
Ensembl chr35:25,061,555...25,061,935 		JBrowse link
G H2BC18 H2B clustered histone 18 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr17:59,120,297...59,121,083 JBrowse link
G H2BC20 H2B clustered histone 20 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr17:59,156,148...59,156,809
Ensembl chr17:59,156,280...59,156,660 		JBrowse link
G H2BC26 H2B clustered histone 26 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr14:603,716...604,222
Ensembl chr14:603,816...604,196 		JBrowse link
G H2BC3 H2B clustered histone 3 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr35:24,001,132...24,001,599 JBrowse link
G H2BC4 H2B clustered histone 4 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr35:24,062,068...24,066,934
Ensembl chr35:24,066,399...24,066,779 		JBrowse link
G H2BC5 H2B clustered histone 5 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr35:24,093,447...24,102,443
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676 		JBrowse link
G H2BC6 H2B clustered histone 6 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr35:24,115,034...24,115,551
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676 		JBrowse link
G H2BC8 H2B clustered histone 8 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr35:24,130,229...24,131,736
Ensembl chr35:24,131,296...24,131,676 		JBrowse link
G IL4 interleukin 4 involved_in ISO (PMID:9973465) BHF-UCL PMID:9973465 NCBI chr11:20,972,693...20,981,539
Ensembl chr11:20,972,690...20,981,534 		JBrowse link
G LOC100687749 60S ribosomal protein L39 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chr  X:91,812,101...91,816,445
Ensembl chr  X:91,811,837...91,816,319 		JBrowse link
G LOC478743 histone H2B type 1-C/E/F/G/I involved_in ISO (PMID:12860195) UniProt PMID:12860195
G LTF lactotransferrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:42,231,994...42,263,202
Ensembl chr20:42,231,994...42,263,202 		JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 acts_upstream_of_or_within ISO (PMID:15692051) MGI PMID:15692051 NCBI chr 2:64,636,850...64,667,232
Ensembl chr 2:64,635,519...64,667,232 		JBrowse link
G PLA2G1B phospholipase A2 group IB involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:16,248,417...16,257,163
Ensembl chr26:16,248,409...16,257,178 		JBrowse link
mucosal immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD160 CD160 molecule involved_in ISO (PMID:22801499) UniProt PMID:22801499 NCBI chr17:58,548,137...58,564,077
Ensembl chr17:58,555,851...58,563,341 		JBrowse link
G EPG5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:45,215,232...45,318,736
Ensembl chr 7:45,215,324...45,314,630 		JBrowse link
G FFAR2 free fatty acid receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:117,197,535...117,201,613
Ensembl chr 1:117,198,289...117,199,284 		JBrowse link
G FFAR3 free fatty acid receptor 3 involved_in ISO (PMID:23665276) UniProt PMID:23665276 NCBI chr 1:117,251,604...117,257,048 JBrowse link
G FFAR3 involved_in IEA Ensembl GO_REF:0000107
G IFNL3 interferon lambda 3 involved_in ISO (PMID:21518880) UniProt PMID:21518880
G IFNLR1 interferon lambda receptor 1 involved_in ISO (PMID:21518880) UniProt PMID:21518880 NCBI chr 2:75,431,842...75,447,917
Ensembl chr 2:75,437,617...75,444,768 		JBrowse link
G IFNLR1 interferon lambda receptor 1 involved_in IEA Ensembl GO_REF:0000107
G OTUD7B OTU deubiquitinase 7B involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:59,225,640...59,280,875
Ensembl chr17:59,229,362...59,280,934 		JBrowse link
positive regulation of immunoglobulin production in mucosal tissue term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9H17orf99 chromosome 9 C17orf99 homolog involved_in ISO (PMID:28978694) UniProt PMID:28978694 NCBI chr 9:2,977,401...2,987,450
Ensembl chr 9:2,976,893...2,987,564 		JBrowse link
G LOC490356 lymphotactin involved_in ISO (PMID:9973465) BHF-UCL PMID:9973465 NCBI chr 7:29,986,433...29,991,096 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 22141
    response to stimulus 9596
      immune response 1725
        organ or tissue specific immune response 45
          hepatic immune response 1
          immune response in brain or nervous system 1
          mucosal immune response + 41
paths to the root