ONTOLOGY REPORT - ANNOTATIONS
Term: somatic diversification of immune receptors
Accession: GO:0002200
browse the term
Definition: The somatic process allowing for the production of immune receptors whose specificity is not encoded in the germline genomic sequences.
Comment: Note that this process covers somatic recombination, gene conversion, hypermutation, N-region addition, and alternate splicing processes of immune receptor diversification.
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Polb
DNA polymerase beta
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:24388753)
Ensembl MGI
PMID:24388753
GO_REF:0000107
NCBI chrNW_004936785:324,655...350,496
Ensembl chrNW_004936785:323,941...350,539
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Yy1
YY1 transcription factor
involved_in
ISO
(PMID:23531880)
MGI
PMID:23531880
NCBI chrNW_004936604:3,911,407...3,945,405
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Cyren
cell cycle regulator of NHEJ
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936579:768,153...776,053
Ensembl chrNW_004936579:768,252...770,440
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Foxp1
forkhead box P1
acts_upstream_of_or_within
ISO
(PMID:16819554)
MGI
PMID:16819554
NCBI chrNW_004936603:2,631,781...3,146,104
Ensembl chrNW_004936603:2,632,274...2,830,324
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Lig4
DNA ligase 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9823897)
Ensembl MGI TreeGrafter
PMID:9823897
GO_REF:0000107 GO_REF:0000118
NCBI chrNW_004936472:3,861,833...3,867,943
Ensembl chrNW_004936472:3,861,866...3,867,933
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Nhej1
non-homologous end joining factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936569:1,494,783...1,578,587
Ensembl chrNW_004936569:1,495,446...1,578,590
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Prkdc
protein kinase, DNA-activated, catalytic subunit
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9768755)
TreeGrafter MGI Ensembl
PMID:9768755
GO_REF:0000107 GO_REF:0000118
NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156
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Tcf3
transcription factor 3
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:16428437)
MGI Ensembl TreeGrafter
PMID:16428437
GO_REF:0000107 GO_REF:0000118
NCBI chrNW_004936588:884,817...913,052
Ensembl chrNW_004936588:884,789...912,753
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Xrcc4
X-ray repair cross complementing 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9875844)
TreeGrafter MGI
PMID:9875844
GO_REF:0000118
NCBI chrNW_004936469:2,248,367...2,495,215
Ensembl chrNW_004936469:2,248,039...2,495,226
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Aicda
activation induced cytidine deaminase
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:17713479)
MGI Ensembl
PMID:17713479
GO_REF:0000107
NCBI chrNW_004936870:25,039...34,601
Ensembl chrNW_004936870:25,039...34,601
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Atad5
ATPase family AAA domain containing 5
involved_in acts_upstream_of
IEA ISO
(PMID:25404367)
Ensembl MGI
PMID:25404367
GO_REF:0000107
NCBI chrNW_004936538:2,815,370...2,877,084
Ensembl chrNW_004936538:2,811,174...2,874,113
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Batf
basic leucine zipper ATF-like transcription factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936488:4,607,716...4,631,237
Ensembl chrNW_004936488:4,607,716...4,631,283
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Cd40lg
CD40 ligand
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936513:10,607,617...10,620,403
Ensembl chrNW_004936513:10,607,617...10,620,403
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Ercc1
ERCC excision repair 1, endonuclease non-catalytic subunit
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:15280420)
MGI Ensembl
PMID:15280420
GO_REF:0000107
NCBI chrNW_004936706:1,854,938...1,867,521
Ensembl chrNW_004936706:1,852,359...1,867,745
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Exo1
exonuclease 1
acts_upstream_of_or_within
ISO
(PMID:14716311)
MGI
PMID:14716311
NCBI chrNW_004936526:8,570,488...8,627,004
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Exosc3
exosome component 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936524:5,580,855...5,586,170
Ensembl chrNW_004936524:5,581,090...5,586,128
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Exosc6
exosome component 6
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936475:23,295,441...23,297,321
Ensembl chrNW_004936475:23,295,500...23,296,318
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Lig4
DNA ligase 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17713479)
Ensembl MGI
PMID:17713479
GO_REF:0000107
NCBI chrNW_004936472:3,861,833...3,867,943
Ensembl chrNW_004936472:3,861,866...3,867,933
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Mlh1
mutL homolog 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12743174)
Ensembl MGI
PMID:12743174
GO_REF:0000107
NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736
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Msh2
mutS homolog 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12743174) (PMID:10430621)
Ensembl MGI
PMID:10430621 PMID:12743174
GO_REF:0000107
NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356
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Msh6
mutS homolog 6
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:16618598) (PMID:17015724)
MGI Ensembl
PMID:16618598 PMID:17015724
GO_REF:0000107
NCBI chrNW_004936508:4,708,661...4,728,671
Ensembl chrNW_004936508:4,708,661...4,728,787
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Nbn
nibrin
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936544:3,773,828...3,812,673
Ensembl chrNW_004936544:3,775,220...3,808,837
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Nfkbiz
NFKB inhibitor zeta
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936630:1,601,006...1,633,844
Ensembl chrNW_004936630:1,601,010...1,632,745
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Pcyt1a
phosphate cytidylyltransferase 1A, choline
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936784:884,751...938,901
Ensembl chrNW_004936784:884,751...938,282
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Rnf168
ring finger protein 168
involved_in
ISO
(PMID:20080757)
UniProt
PMID:20080757
NCBI chrNW_004936784:1,073,236...1,094,575
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Rnf8
ring finger protein 8
involved_in
ISO
(PMID:20080757)
UniProt
PMID:20080757
NCBI chrNW_004936476:22,074,146...22,121,286
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Sanbr
SANT and BTB domain regulator of CSR
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936491:6,578,538...6,629,610
Ensembl chrNW_004936491:6,578,484...6,630,513
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Swap70
switching B cell complex subunit SWAP70
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:9642267)
MGI Ensembl
PMID:9642267
GO_REF:0000107
NCBI chrNW_004936528:8,441,839...8,511,374
Ensembl chrNW_004936528:8,441,527...8,511,376
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Ung
uracil DNA glycosylase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17015724)
Ensembl MGI
PMID:17015724
GO_REF:0000107
NCBI chrNW_004936769:911,296...922,770
Ensembl chrNW_004936769:910,838...922,726
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Xrcc4
X-ray repair cross complementing 4
acts_upstream_of_or_within
ISO
(PMID:17713479)
MGI
PMID:17713479
NCBI chrNW_004936469:2,248,367...2,495,215
Ensembl chrNW_004936469:2,248,039...2,495,226
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Ccr6
C-C motif chemokine receptor 6
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936489:16,669,297...16,689,451
Ensembl chrNW_004936489:16,669,297...16,689,451
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Bcl6
BCL6 transcription repressor
involved_in acts_upstream_of
IEA ISO
(PMID:10490661)
Ensembl MGI
PMID:10490661
GO_REF:0000107
NCBI chrNW_004936578:2,371,976...2,395,034
Ensembl chrNW_004936578:2,371,945...2,395,071
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Foxp3
forkhead box P3
involved_in acts_upstream_of
IEA ISO
(PMID:16275384)
Ensembl MGI
PMID:16275384
GO_REF:0000107
NCBI chrNW_004936721:1,118,376...1,125,282
Ensembl chrNW_004936721:1,118,782...1,132,308
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Stat6
signal transducer and activator of transcription 6
involved_in acts_upstream_of
IEA ISO
(PMID:10490661)
Ensembl MGI
PMID:10490661
GO_REF:0000107
NCBI chrNW_004936646:1,297,530...1,312,508
Ensembl chrNW_004936646:1,296,290...1,312,157
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Hspd1
heat shock protein family D (Hsp60) member 1
involved_in
ISO
(PMID:16148103)
BHF-UCL
PMID:16148103
NCBI chrNW_004936506:1,678,069...1,687,632
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Parp3
poly(ADP-ribose) polymerase family member 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936529:3,291,282...3,297,581
Ensembl chrNW_004936529:3,291,269...3,299,992
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Bcl6
BCL6 transcription repressor
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10490661)
Ensembl MGI
PMID:10490661
GO_REF:0000107
NCBI chrNW_004936578:2,371,976...2,395,034
Ensembl chrNW_004936578:2,371,945...2,395,071
G
Foxp3
forkhead box P3
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16275384)
Ensembl MGI
PMID:16275384
GO_REF:0000107
NCBI chrNW_004936721:1,118,376...1,125,282
Ensembl chrNW_004936721:1,118,782...1,132,308
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Ndfip1
Nedd4 family interacting protein 1
acts_upstream_of_or_within
ISO
(PMID:17137798)
MGI
PMID:17137798
NCBI chrNW_004936504:12,053,470...12,103,346
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Tnfsf4
TNF superfamily member 4
involved_in
ISO
(PMID:12496423)
BHF-UCL
PMID:12496423
NCBI chrNW_004936481:14,391,359...14,409,514
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Exosc3
exosome component 3
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:21255825)
MGI Ensembl
PMID:21255825
GO_REF:0000107
NCBI chrNW_004936524:5,580,855...5,586,170
Ensembl chrNW_004936524:5,581,090...5,586,128
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Exosc6
exosome component 6
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:21255825)
Ensembl MGI
PMID:21255825
GO_REF:0000107
NCBI chrNW_004936475:23,295,441...23,297,321
Ensembl chrNW_004936475:23,295,500...23,296,318
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Hmces
5-hydroxymethylcytosine binding, ES cell specific
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936798:261,566...284,480
Ensembl chrNW_004936798:261,661...273,011
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Kmt5b
lysine methyltransferase 5B
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936599:1,928,172...1,983,983
Ensembl chrNW_004936599:1,928,145...1,984,008
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Kmt5c
lysine methyltransferase 5C
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936886:596,949...602,959
Ensembl chrNW_004936886:595,782...604,286
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Mad2l2
mitotic arrest deficient 2 like 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936474:538,703...542,901
Ensembl chrNW_004936474:538,625...542,901
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Paxip1
PAX interacting protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936527:9,440,129...9,488,215
Ensembl chrNW_004936527:9,440,036...9,484,245
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Rif1
replication timing regulatory factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936469:26,045,500...26,105,980
Ensembl chrNW_004936469:26,048,953...26,105,997
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Shld1
shieldin complex subunit 1
involved_in
IEA
TreeGrafter Ensembl
GO_REF:0000107 GO_REF:0000118
NCBI chrNW_004936485:13,179,218...13,267,980
Ensembl chrNW_004936485:13,176,426...13,267,953
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Shld2
shieldin complex subunit 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936601:5,315,297...5,400,752
Ensembl chrNW_004936601:5,315,261...5,396,301
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Shld3
shieldin complex subunit 3
involved_in
ISO
(PMID:29656893)
UniProt
PMID:29656893
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Tfrc
transferrin receptor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936784:696,738...728,385
Ensembl chrNW_004936784:696,713...728,543
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Tp53bp1
tumor protein p53 binding protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936471:6,589,395...6,668,242
Ensembl chrNW_004936471:6,589,564...6,668,305
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Mlh1
mutL homolog 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736
G
Msh2
mutS homolog 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356
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Nsd2
nuclear receptor binding SET domain protein 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23241889)
Ensembl MGI
PMID:23241889
GO_REF:0000107
NCBI chrNW_004936477:21,460,442...21,531,563
Ensembl chrNW_004936477:21,460,478...21,534,909
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Pms2
PMS1 homolog 2, mismatch repair system component
involved_in
ISO
(PMID:10430621)
CAFA
PMID:10430621
NCBI chrNW_004936750:439,396...468,747
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Tgfb1
transforming growth factor beta 1
acts_upstream_of_or_within involved_in
ISO IEA ISS
(PMID:14988498)
MGI Ensembl AgBase
PMID:14988498
GO_REF:0000024 GO_REF:0000107
NCBI chrNW_004936661:3,742,080...3,758,266
Ensembl chrNW_004936661:3,742,066...3,758,272
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Tnfsf13
TNF superfamily member 13
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:14988498)
MGI Ensembl TreeGrafter
PMID:14988498
GO_REF:0000107 GO_REF:0000118
NCBI chrNW_004936595:839,877...842,962
Ensembl chrNW_004936595:839,877...842,962
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Clcf1
cardiotrophin like cytokine factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936599:2,372,889...2,376,316
Ensembl chrNW_004936599:2,372,031...2,376,939
G
Stat6
signal transducer and activator of transcription 6
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10490661)
Ensembl MGI
PMID:10490661
GO_REF:0000107
NCBI chrNW_004936646:1,297,530...1,312,508
Ensembl chrNW_004936646:1,296,290...1,312,157
G
Atad5
ATPase family AAA domain containing 5
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:25404367)
Ensembl MGI
PMID:25404367
GO_REF:0000107
NCBI chrNW_004936538:2,815,370...2,877,084
Ensembl chrNW_004936538:2,811,174...2,874,113
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Cd28
CD28 molecule
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:7688139)
Ensembl MGI
PMID:7688139
GO_REF:0000107
NCBI chrNW_004936631:335,411...363,407
Ensembl chrNW_004936631:335,411...363,407
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Cd40
CD40 molecule
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12882831)
Ensembl MGI
PMID:12882831
GO_REF:0000107
NCBI chrNW_004936514:6,936,915...6,947,246
Ensembl chrNW_004936514:6,936,572...6,947,280
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Ifng
interferon gamma
acts_upstream_of_or_within
ISO
(PMID:12882831)
MGI
PMID:12882831
NCBI chrNW_004936545:6,139,130...6,144,543
Ensembl chrNW_004936545:6,139,116...6,148,452
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Il2
interleukin 2
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:1830926)
MGI Ensembl
PMID:1830926
GO_REF:0000107
NCBI chrNW_004936662:1,594,953...1,599,625
Ensembl chrNW_004936662:1,594,953...1,599,625
G
Mlh1
mutL homolog 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736
G
Msh2
mutS homolog 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356
G
Pagr1
PAXIP1 associated glutamate rich protein 1
involved_in
ISO
(PMID:26744420)
UniProt
PMID:26744420
NCBI chrNW_004936501:12,657,092...12,660,106
Ensembl chrNW_004936501:12,656,435...12,660,067
G
Paxip1
PAX interacting protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936527:9,440,129...9,488,215
Ensembl chrNW_004936527:9,440,036...9,484,245
G
Pms2
PMS1 homolog 2, mismatch repair system component
involved_in
ISO
(PMID:10430621)
CAFA
PMID:10430621
NCBI chrNW_004936750:439,396...468,747
G
Ptprc
protein tyrosine phosphatase receptor type C
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9015183)
Ensembl MGI
PMID:9015183
GO_REF:0000107
NCBI chrNW_004936567:5,266,653...5,378,464
Ensembl chrNW_004936567:5,267,615...5,378,258
G
Tbx21
T-box transcription factor 21
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12882831)
Ensembl MGI
PMID:12882831
GO_REF:0000107
NCBI chrNW_004936490:13,546,405...13,558,635
Ensembl chrNW_004936490:13,546,292...13,558,635
G
Aplf
aprataxin and PNKP like factor
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:21211721)
Ensembl MGI
PMID:21211721
GO_REF:0000107
NCBI chrNW_004936491:12,857,928...12,961,709
Ensembl chrNW_004936491:12,857,785...12,962,376
G
Supt6h
SPT6 homolog, histone chaperone and transcription elongation factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936538:4,878,645...4,910,613
Ensembl chrNW_004936538:4,878,662...4,910,597
G
Foxp3
forkhead box P3
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:16275384)
MGI Ensembl
PMID:16275384
GO_REF:0000107
NCBI chrNW_004936721:1,118,376...1,125,282
Ensembl chrNW_004936721:1,118,782...1,132,308
G
Il27ra
interleukin 27 receptor subunit alpha
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:11057672)
MGI Ensembl
PMID:11057672
GO_REF:0000107
NCBI chrNW_004936659:2,706,037...2,720,486
Ensembl chrNW_004936659:2,705,985...2,722,748
G
Ndfip1
Nedd4 family interacting protein 1
acts_upstream_of_or_within
ISO
(PMID:17137798)
MGI
PMID:17137798
NCBI chrNW_004936504:12,053,470...12,103,346
G
Slc15a4
solute carrier family 15 member 4
involved_in
ISO
(PMID:25310967)
UniProt
PMID:25310967
NCBI chrNW_004936660:481,772...493,567
G
Adar
adenosine deaminase RNA specific
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23209284)
Ensembl MGI
PMID:23209284
GO_REF:0000107
NCBI chrNW_004936580:4,183,016...4,208,341
Ensembl chrNW_004936580:4,183,079...4,203,435
G
Aicda
activation induced cytidine deaminase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936870:25,039...34,601
Ensembl chrNW_004936870:25,039...34,601
G
Ctnnbl1
catenin beta like 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936561:3,434,232...3,589,341
Ensembl chrNW_004936561:3,434,731...3,589,341
G
Polb
DNA polymerase beta
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:24388753)
MGI Ensembl
PMID:24388753
GO_REF:0000107
NCBI chrNW_004936785:324,655...350,496
Ensembl chrNW_004936785:323,941...350,539
G
Aicda
activation induced cytidine deaminase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936870:25,039...34,601
Ensembl chrNW_004936870:25,039...34,601
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Exo1
exonuclease 1
acts_upstream_of_or_within
ISO
(PMID:14716311)
MGI
PMID:14716311
NCBI chrNW_004936526:8,570,488...8,627,004
G
Hmces
5-hydroxymethylcytosine binding, ES cell specific
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936798:261,566...284,480
Ensembl chrNW_004936798:261,661...273,011
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Mcm3ap
minichromosome maintenance complex component 3 associated protein
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936778:273,152...318,157
Ensembl chrNW_004936778:273,909...319,232
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Mlh1
mutL homolog 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10092760), (PMID:10429667)
Ensembl MGI TreeGrafter
PMID:10092760 PMID:10429667
GO_REF:0000107 GO_REF:0000118
NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736
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Msh2
mutS homolog 2
acts_upstream_of_or_within NOT|acts_upstream_of_or_within involved_in
ISO IEA
(PMID:14568978) (PMID:15494304) (PMID:9607915) (PMID:9607916) (PMID:9697842), (PMID:9697843)
MGI Ensembl
PMID:9607915 PMID:9607916 PMID:9697842 PMID:9697843 PMID:14568978 PMID:15494304 More...
GO_REF:0000107
NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356
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Msh3
mutS homolog 3
NOT|acts_upstream_of_or_within
ISO
(PMID:10662804)
MGI
PMID:10662804
NCBI chrNW_004936469:82,967...275,772
Ensembl chrNW_004936469:83,285...273,561
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Msh6
mutS homolog 6
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:10662804), (PMID:15238604), (PMID:17015724) (PMID:16618598)
MGI Ensembl
PMID:10662804 PMID:15238604 PMID:16618598 PMID:17015724
GO_REF:0000107
NCBI chrNW_004936508:4,708,661...4,728,671
Ensembl chrNW_004936508:4,708,661...4,728,787
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Nuggc
nuclear GTPase, germinal center associated
acts_upstream_of_or_within
ISO
(PMID:22833677)
MGI
PMID:22833677
NCBI chrNW_004936675:885,015...931,657
Ensembl chrNW_004936675:885,039...920,253
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Pms2
PMS1 homolog 2, mismatch repair system component
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10429667)
TreeGrafter MGI
PMID:10429667
GO_REF:0000118
NCBI chrNW_004936750:439,396...468,747
G
Polb
DNA polymerase beta
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:24388753)
MGI Ensembl
PMID:24388753
GO_REF:0000107
NCBI chrNW_004936785:324,655...350,496
Ensembl chrNW_004936785:323,941...350,539
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Polm
DNA polymerase mu
acts_upstream_of_or_within
ISO
(PMID:15789338)
MGI
PMID:15789338
NCBI chrNW_004936478:19,032,995...19,042,400
Ensembl chrNW_004936478:19,032,920...19,042,432
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Polq
DNA polymerase theta
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936536:7,904,166...8,004,305
Ensembl chrNW_004936536:7,904,981...8,004,199
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Samhd1
SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936561:4,180,607...4,238,623
Ensembl chrNW_004936561:4,180,546...4,229,036
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Ung
uracil DNA glycosylase
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:17015724) (PMID:15494304)
MGI Ensembl
PMID:15494304 PMID:17015724
GO_REF:0000107
NCBI chrNW_004936769:911,296...922,770
Ensembl chrNW_004936769:910,838...922,726
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Mlh1
mutL homolog 1
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:11828012)
MGI Ensembl
PMID:11828012
GO_REF:0000107
NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736
G
Msh2
mutS homolog 2
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:11828012) (PMID:14563316), (PMID:15955838) (PMID:15494304) (PMID:14568978)
MGI Ensembl
PMID:11828012 PMID:14563316 PMID:14568978 PMID:15494304 PMID:15955838
GO_REF:0000107
NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356
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Msh3
mutS homolog 3
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:15238604)
TreeGrafter MGI
PMID:15238604
GO_REF:0000118
NCBI chrNW_004936469:82,967...275,772
Ensembl chrNW_004936469:83,285...273,561
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Msh6
mutS homolog 6
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:15238604)
Ensembl MGI
PMID:15238604
GO_REF:0000107
NCBI chrNW_004936508:4,708,661...4,728,671
Ensembl chrNW_004936508:4,708,661...4,728,787
G
Pms2
PMS1 homolog 2, mismatch repair system component
acts_upstream_of_or_within
ISO
(PMID:11828012)
MGI
PMID:11828012
NCBI chrNW_004936750:439,396...468,747
G
Ung
uracil DNA glycosylase
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:15494304)
MGI Ensembl
PMID:15494304
GO_REF:0000107
NCBI chrNW_004936769:911,296...922,770
Ensembl chrNW_004936769:910,838...922,726
G
Mlh1
mutL homolog 1
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:12743174)
MGI Ensembl
PMID:12743174
GO_REF:0000107
NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736
G
Msh2
mutS homolog 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12743174)
Ensembl TreeGrafter MGI
PMID:12743174
GO_REF:0000107 GO_REF:0000118
NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356
G
Bcl11b
BCL11 transcription factor B
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:12717433)
MGI Ensembl
PMID:12717433
GO_REF:0000107
NCBI chrNW_004936604:3,023,781...3,110,104
Ensembl chrNW_004936604:3,023,844...3,110,083
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Lef1
lymphoid enhancer binding factor 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9462507)
Ensembl MGI
PMID:9462507
GO_REF:0000107
NCBI chrNW_004936818:453,635...569,194
Ensembl chrNW_004936818:453,635...567,469
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Lig4
DNA ligase 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10911993)
Ensembl MGI
PMID:10911993
GO_REF:0000107
NCBI chrNW_004936472:3,861,833...3,867,943
Ensembl chrNW_004936472:3,861,866...3,867,933
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Prkdc
protein kinase, DNA-activated, catalytic subunit
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9768755)
Ensembl MGI
PMID:9768755
GO_REF:0000107
NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156
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Tcf7
transcription factor 7
acts_upstream_of_or_within
ISO
(PMID:9462507)
MGI
PMID:9462507
NCBI chrNW_004936647:1,096,726...1,125,753
Ensembl chrNW_004936647:1,097,019...1,125,729
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Atm
ATM serine/threonine kinase
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:23836881)
MGI Ensembl
PMID:23836881
GO_REF:0000107
NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211
G
Dcaf1
DDB1 and CUL4 associated factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004936529:2,786,252...2,856,516
Ensembl chrNW_004936529:2,786,252...2,856,967
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Dclre1c
DNA cross-link repair 1C
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23836881)
Ensembl MGI
PMID:23836881
GO_REF:0000107
NCBI chrNW_004936613:1,467,797...1,501,107
Ensembl chrNW_004936613:1,470,365...1,501,138
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Hmgb1
high mobility group box 1
involved_in
ISO
(PMID:9166431)
UniProt
PMID:9166431
NCBI chrNW_004936472:25,236,728...25,246,585
Ensembl chrNW_004936472:25,236,728...25,246,580
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Lig1
DNA ligase 1
NOT|involved_in
ISO
(PMID:9809069)
UniProt
PMID:9809069
NCBI chrNW_004936664:2,242,916...2,276,286
Ensembl chrNW_004936664:2,242,897...2,276,715
G
Lig3
DNA ligase 3
NOT|involved_in
ISO
(PMID:9809069)
UniProt
PMID:9809069
NCBI chrNW_004936538:206,179...228,487
Ensembl chrNW_004936538:206,839...226,441
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Lig4
DNA ligase 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10716994) (PMID:15194694)
Ensembl MGI
PMID:10716994 PMID:15194694
GO_REF:0000107
NCBI chrNW_004936472:3,861,833...3,867,943
Ensembl chrNW_004936472:3,861,866...3,867,933
G
Prkdc
protein kinase, DNA-activated, catalytic subunit
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23836881)
Ensembl MGI
PMID:23836881
GO_REF:0000107
NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156
G
Rag1
recombination activating 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:2360047)
TreeGrafter MGI UniProt Ensembl InterPro
PMID:2360047
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118
NCBI chrNW_004936533:1,817,135...1,827,393
Ensembl chrNW_004936533:1,817,135...1,827,393
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Rag2
recombination activating 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:2360047)
TreeGrafter MGI Ensembl
PMID:2360047
GO_REF:0000107 GO_REF:0000118
NCBI chrNW_004936533:1,801,207...1,807,431
Ensembl chrNW_004936533:1,801,391...1,807,431
G
Xrcc4
X-ray repair cross complementing 4
acts_upstream_of_or_within
ISO
(PMID:10716994)
MGI
PMID:10716994
NCBI chrNW_004936469:2,248,367...2,495,215
Ensembl chrNW_004936469:2,248,039...2,495,226
G
Xrcc6
X-ray repair cross complementing 6
acts_upstream_of_or_within
ISO
(PMID:10716994)
MGI
PMID:10716994
NCBI chrNW_004936492:303,843...325,812
Ensembl chrNW_004936492:300,057...325,845
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all