ONTOLOGY REPORT - ANNOTATIONS
Term: somatic diversification of immune receptors
Accession: GO:0002200
browse the term
Definition: The somatic process allowing for the production of immune receptors whose specificity is not encoded in the germline genomic sequences.
Comment: Note that this process covers somatic recombination, gene conversion, hypermutation, N-region addition, and alternate splicing processes of immune receptor diversification.
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POLB
DNA polymerase beta
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:24388753)
Ensembl MGI
PMID:24388753
GO_REF:0000107
NCBI chr 8:41,582,370...41,615,950
Ensembl chr 8:39,026,991...39,060,464
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YY1
YY1 transcription factor
involved_in
ISO
(PMID:23531880)
MGI
PMID:23531880
NCBI chr14:80,859,491...80,903,651
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CYREN
cell cycle regulator of NHEJ
involved_in
ISO
(PMID:30017584), (PMID:31795137)
UniProt
PMID:30017584 PMID:31795137
NCBI chr 7:127,130,587...127,148,824
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FOXP1
forkhead box P1
acts_upstream_of_or_within
ISO
(PMID:16819554)
MGI
PMID:16819554
NCBI chr 3:70,893,933...71,523,892
Ensembl chr 3:72,258,456...72,498,173
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LIG4
DNA ligase 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9823897)
Ensembl TreeGrafter MGI
PMID:9823897
GO_REF:0000107 GO_REF:0000118
NCBI chr13:89,336,434...89,347,418
Ensembl chr13:108,475,820...108,478,555
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NHEJ1
non-homologous end joining factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr2B:106,326,596...106,419,928
Ensembl chr2B:224,926,183...225,008,788
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PRKDC
protein kinase, DNA-activated, catalytic subunit
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9768755)
Ensembl TreeGrafter MGI
PMID:9768755
GO_REF:0000107 GO_REF:0000118
NCBI chr 8:44,201,391...44,386,803
Ensembl chr 8:41,593,029...41,778,299
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TCF3
transcription factor 3
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:16428437)
MGI TreeGrafter Ensembl
PMID:16428437
GO_REF:0000107 GO_REF:0000118
Ensembl chr19:1,582,297...1,622,025
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XRCC4
X-ray repair cross complementing 4
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:9875844)
MGI TreeGrafter
PMID:9875844
GO_REF:0000118
NCBI chr 5:31,927,463...32,202,394
Ensembl chr 5:32,246,320...32,521,490
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AICDA
activation induced cytidine deaminase
acts_upstream_of_or_within involved_in
ISO
(PMID:17713479) (PMID:21518874)
MGI UniProt
PMID:17713479 PMID:21518874
NCBI chr12:8,688,392...8,699,008
Ensembl chr12:8,904,273...8,913,917
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ATAD5
ATPase family AAA domain containing 5
involved_in acts_upstream_of
IEA ISO
(PMID:25404367)
Ensembl MGI
PMID:25404367
GO_REF:0000107
NCBI chr17:25,944,259...26,009,317
Ensembl chr17:25,436,195...25,496,242
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BATF
basic leucine zipper ATF-like transcription factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr14:56,075,768...56,100,749
Ensembl chr14:74,919,115...74,943,652
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CD40LG
CD40 ligand
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr X:125,776,138...125,788,820
Ensembl chr X:136,042,849...136,058,202
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ERCC1
ERCC excision repair 1, endonuclease non-catalytic subunit
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:15280420)
Ensembl MGI
PMID:15280420
GO_REF:0000107
NCBI chr19:42,356,039...42,427,754
Ensembl chr19:50,951,674...50,968,430
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EXO1
exonuclease 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:14716311)
Ensembl MGI
PMID:14716311
GO_REF:0000107
NCBI chr 1:217,410,175...217,451,982
Ensembl chr 1:222,389,684...222,431,556
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EXOSC3
exosome component 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:37,611,173...37,634,869
Ensembl chr 9:38,552,659...38,558,078
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LIG4
DNA ligase 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17713479)
Ensembl MGI
PMID:17713479
GO_REF:0000107
NCBI chr13:89,336,434...89,347,418
Ensembl chr13:108,475,820...108,478,555
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LOC100970806
exosome complex component MTR3
involved_in
ISO
(PMID:21255825)
UniProt
PMID:21255825
NCBI chr 7:140,163,275...140,176,732
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MLH1
mutL homolog 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12743174)
Ensembl MGI
PMID:12743174
GO_REF:0000107
NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801
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MSH2
mutS homolog 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10430621) (PMID:12743174)
Ensembl MGI
PMID:10430621 PMID:12743174
GO_REF:0000107
NCBI chr2A:47,524,468...47,602,376
Ensembl chr2A:48,447,207...48,554,461
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MSH6
mutS homolog 6
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17015724) (PMID:16618598)
Ensembl MGI
PMID:16618598 PMID:17015724
GO_REF:0000107
NCBI chr2A:47,901,591...47,926,662
Ensembl chr2A:48,824,350...48,849,779
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NBN
nibrin
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:86,622,797...86,674,202
Ensembl chr 8:88,575,198...88,626,307
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NFKBIZ
NFKB inhibitor zeta
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:98,914,957...98,948,467
Ensembl chr 3:105,616,645...105,628,300
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PCYT1A
phosphate cytidylyltransferase 1A, choline
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:193,574,603...193,633,601
Ensembl chr 3:203,517,951...203,576,854
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RNF168
ring finger protein 168
involved_in
ISO
(PMID:20080757)
UniProt
PMID:20080757
NCBI chr 3:193,814,785...193,848,620
Ensembl chr 3:203,756,589...203,790,687
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RNF8
ring finger protein 8
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:36,918,705...36,955,380
Ensembl chr 6:38,108,414...38,145,949
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SANBR
SANT and BTB domain regulator of CSR
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr2A:61,157,551...61,229,955
Ensembl chr2A:62,299,121...62,369,817
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SWAP70
switching B cell complex subunit SWAP70
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9642267)
Ensembl MGI
PMID:9642267
GO_REF:0000107
NCBI chr11:9,797,024...9,883,400
Ensembl chr11:9,526,752...9,614,422
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UNG
uracil DNA glycosylase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17015724)
Ensembl MGI
PMID:17015724
GO_REF:0000107
NCBI chr12:106,674,073...106,687,054
Ensembl chr12:110,067,879...110,080,891
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XRCC4
X-ray repair cross complementing 4
acts_upstream_of_or_within
ISO
(PMID:17713479)
MGI
PMID:17713479
NCBI chr 5:31,927,463...32,202,394
Ensembl chr 5:32,246,320...32,521,490
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CCR6
C-C motif chemokine receptor 6
involved_in
ISO
(PMID:27174992)
UniProt
PMID:27174992
NCBI chr 6:165,094,563...165,109,774
Ensembl chr 6:170,069,689...170,084,779
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FDCSP
follicular dendritic cell secreted protein
acts_upstream_of_positive_effect
ISO
(PMID:17548624)
MGI
PMID:17548624
NCBI chr 4:53,988,378...53,998,028
Ensembl chr 4:60,331,243...60,341,647
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BCL6
BCL6 transcription repressor
involved_in acts_upstream_of
IEA ISO
(PMID:10490661)
Ensembl MGI
PMID:10490661
GO_REF:0000107
NCBI chr 3:184,748,135...184,772,375
Ensembl chr 3:193,308,296...193,332,124
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FDCSP
follicular dendritic cell secreted protein
acts_upstream_of_or_within_negative_effect
ISO
(PMID:17548624)
MGI
PMID:17548624
NCBI chr 4:53,988,378...53,998,028
Ensembl chr 4:60,331,243...60,341,647
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FOXP3
forkhead box P3
involved_in acts_upstream_of
IEA ISO
(PMID:16275384)
Ensembl MGI
PMID:16275384
GO_REF:0000107
NCBI chr X:41,550,462...41,567,492
Ensembl chr X:49,402,652...49,417,029
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IL4
interleukin 4
acts_upstream_of
ISO
(PMID:14988498)
MGI
PMID:14988498
NCBI chr 5:128,091,342...128,099,886
Ensembl chr 5:134,253,039...134,261,581
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STAT6
signal transducer and activator of transcription 6
involved_in acts_upstream_of
IEA ISO
(PMID:10490661)
Ensembl MGI
PMID:10490661
GO_REF:0000107
Ensembl chr12:32,068,679...32,085,099
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FDCSP
follicular dendritic cell secreted protein
acts_upstream_of_or_within_negative_effect
ISO
(PMID:17548624)
MGI
PMID:17548624
NCBI chr 4:53,988,378...53,998,028
Ensembl chr 4:60,331,243...60,341,647
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HSPD1
heat shock protein family D (Hsp60) member 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr2B:84,729,615...84,743,352
Ensembl chr2B:202,623,497...202,636,959
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IL4
interleukin 4
acts_upstream_of
ISO
(PMID:14988498)
MGI
PMID:14988498
NCBI chr 5:128,091,342...128,099,886
Ensembl chr 5:134,253,039...134,261,581
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PARP3
poly(ADP-ribose) polymerase family member 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:51,883,695...51,890,266
Ensembl chr 3:53,112,494...53,119,053
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FDCSP
follicular dendritic cell secreted protein
involved_in
ISO
(PMID:24399151)
MGI
PMID:24399151
NCBI chr 4:53,988,378...53,998,028
Ensembl chr 4:60,331,243...60,341,647
G
BCL6
BCL6 transcription repressor
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10490661)
Ensembl MGI
PMID:10490661
GO_REF:0000107
NCBI chr 3:184,748,135...184,772,375
Ensembl chr 3:193,308,296...193,332,124
G
FOXP3
forkhead box P3
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16275384)
Ensembl MGI
PMID:16275384
GO_REF:0000107
NCBI chr X:41,550,462...41,567,492
Ensembl chr X:49,402,652...49,417,029
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NDFIP1
Nedd4 family interacting protein 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17137798)
Ensembl MGI
PMID:17137798
GO_REF:0000107
NCBI chr 5:137,467,161...137,511,569
Ensembl chr 5:143,600,789...143,622,913
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TNFSF4
TNF superfamily member 4
involved_in
ISO
(PMID:12496423)
BHF-UCL
PMID:12496423
NCBI chr 1:148,684,689...148,989,775
Ensembl chr 1:152,391,450...152,415,845 Ensembl chr 1:152,391,450...152,415,845
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EXOSC3
exosome component 3
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:21255825)
Ensembl MGI
PMID:21255825
GO_REF:0000107
NCBI chr 9:37,611,173...37,634,869
Ensembl chr 9:38,552,659...38,558,078
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HMCES
5-hydroxymethylcytosine binding, ES cell specific
involved_in
ISO
(PMID:31806351)
UniProt
PMID:31806351
NCBI chr 3:126,339,758...126,367,166
Ensembl chr 3:133,694,676...133,721,519
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KMT5B
lysine methyltransferase 5B
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr11:63,239,796...63,297,113
Ensembl chr11:66,549,230...66,581,475
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KMT5C
lysine methyltransferase 5C
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr19:52,381,963...52,390,507
Ensembl chr19:61,073,396...61,078,717
G
LOC100970806
exosome complex component MTR3
acts_upstream_of_or_within
ISO
(PMID:21255825)
MGI
PMID:21255825
NCBI chr 7:140,163,275...140,176,732
G
MAD2L2
mitotic arrest deficient 2 like 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:10,436,532...10,454,023
Ensembl chr 1:11,654,963...11,661,526
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PAXIP1
PAX interacting protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:146,546,658...146,605,912
Ensembl chr 7:158,276,798...158,330,911
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RIF1
replication timing regulatory factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr2B:38,721,658...38,818,488
Ensembl chr2B:155,985,960...156,052,926
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SHLD1
shieldin complex subunit 1
involved_in
IEA
Ensembl TreeGrafter
GO_REF:0000107 GO_REF:0000118
NCBI chr20:5,753,262...5,858,728
Ensembl chr20:5,537,488...5,642,107
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SHLD2
shieldin complex subunit 2
involved_in
ISO
(PMID:29656893)
UniProt
PMID:29656893
NCBI chr10:83,639,020...83,643,420
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SHLD3
shieldin complex subunit 3
involved_in
ISO
(PMID:29656893)
UniProt
PMID:29656893
NCBI chr 5:48,376,338...48,382,052
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TFRC
transferrin receptor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:193,384,817...193,417,532
Ensembl chr 3:203,333,953...203,373,998
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TP53BP1
tumor protein p53 binding protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr15:22,364,696...22,472,499
Ensembl chr15:40,519,012...40,626,741
G
MLH1
mutL homolog 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801
G
MSH2
mutS homolog 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr2A:47,524,468...47,602,376
Ensembl chr2A:48,447,207...48,554,461
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NSD2
nuclear receptor binding SET domain protein 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23241889)
Ensembl MGI
PMID:23241889
GO_REF:0000107
NCBI chr 4:2,009,276...2,119,182
Ensembl chr 4:1,945,307...2,027,425
G
PMS2
PMS1 homolog 2, mismatch repair system component
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:7,433,031...7,459,560
Ensembl chr 7:6,167,403...6,202,984
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TGFB1
transforming growth factor beta 1
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:14988498)
MGI Ensembl
PMID:14988498
GO_REF:0000107
NCBI chr19:38,324,009...38,347,003
Ensembl chr19:46,831,659...46,852,973
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TNFSF13
TNF superfamily member 13
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:14988498)
MGI TreeGrafter Ensembl
PMID:14988498
GO_REF:0000107 GO_REF:0000118
NCBI chr17:7,589,931...7,593,527
Ensembl chr17:7,576,465...7,579,834
G
CLCF1
cardiotrophin like cytokine factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr11:62,722,611...62,734,279
G
IL4
interleukin 4
acts_upstream_of_or_within
ISO
(PMID:14988498)
MGI
PMID:14988498
NCBI chr 5:128,091,342...128,099,886
Ensembl chr 5:134,253,039...134,261,581
G
STAT6
signal transducer and activator of transcription 6
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10490661)
Ensembl MGI
PMID:10490661
GO_REF:0000107
Ensembl chr12:32,068,679...32,085,099
G
ATAD5
ATPase family AAA domain containing 5
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:25404367)
Ensembl MGI
PMID:25404367
GO_REF:0000107
NCBI chr17:25,944,259...26,009,317
Ensembl chr17:25,436,195...25,496,242
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CD28
CD28 molecule
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:7688139)
Ensembl MGI
PMID:7688139
GO_REF:0000107
NCBI chr2B:90,938,795...90,971,438
Ensembl chr2B:209,076,388...209,111,213
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CD40
CD40 molecule
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12882831)
Ensembl MGI
PMID:12882831
GO_REF:0000107
NCBI chr20:42,455,711...42,467,139
Ensembl chr20:43,541,619...43,552,994
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IFNG
interferon gamma
acts_upstream_of_or_within
ISO
(PMID:12882831)
MGI
PMID:12882831
NCBI chr12:65,663,764...65,668,732
Ensembl chr12:68,448,861...68,453,829
G
IL2
interleukin 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:1830926)
Ensembl MGI
PMID:1830926
GO_REF:0000107
NCBI chr 4:114,637,328...114,642,586
Ensembl chr 4:125,782,563...125,787,984
G
IL4
interleukin 4
acts_upstream_of_or_within
ISO
(PMID:12882831), (PMID:14988498)
MGI
PMID:12882831 PMID:14988498
NCBI chr 5:128,091,342...128,099,886
Ensembl chr 5:134,253,039...134,261,581
G
MLH1
mutL homolog 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801
G
MSH2
mutS homolog 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr2A:47,524,468...47,602,376
Ensembl chr2A:48,447,207...48,554,461
G
PAGR1
PAXIP1 associated glutamate rich protein 1
involved_in
ISO
(PMID:26744420)
UniProt
PMID:26744420
Ensembl chr16:30,186,326...30,190,654
G
PAXIP1
PAX interacting protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:146,546,658...146,605,912
Ensembl chr 7:158,276,798...158,330,911
G
PMS2
PMS1 homolog 2, mismatch repair system component
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:7,433,031...7,459,560
Ensembl chr 7:6,167,403...6,202,984
G
PTPRC
protein tyrosine phosphatase receptor type C
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9015183)
Ensembl MGI
PMID:9015183
GO_REF:0000107
NCBI chr 1:174,246,389...174,364,893
Ensembl chr 1:178,556,104...178,672,994
G
TBX21
T-box transcription factor 21
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12882831)
Ensembl MGI
PMID:12882831
GO_REF:0000107
NCBI chr17:9,791,008...9,803,894
Ensembl chr17:9,973,920...9,985,660
G
APLF
aprataxin and PNKP like factor
acts_upstream_of_or_within
ISO
(PMID:21211721)
MGI
PMID:21211721
NCBI chr2A:68,509,314...68,629,192
Ensembl chr2A:69,632,459...69,744,611
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SUPT6H
SPT6 homolog, histone chaperone and transcription elongation factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:28,073,288...28,113,041
Ensembl chr17:28,578,199...28,617,292
G
FOXP3
forkhead box P3
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16275384)
Ensembl MGI
PMID:16275384
GO_REF:0000107
NCBI chr X:41,550,462...41,567,492
Ensembl chr X:49,402,652...49,417,029
G
IL27RA
interleukin 27 receptor subunit alpha
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:11057672)
Ensembl MGI
PMID:11057672
GO_REF:0000107
Ensembl chr19:14,323,618...14,343,627
G
NDFIP1
Nedd4 family interacting protein 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17137798)
Ensembl MGI
PMID:17137798
GO_REF:0000107
NCBI chr 5:137,467,161...137,511,569
Ensembl chr 5:143,600,789...143,622,913
G
SLC15A4
solute carrier family 15 member 4
involved_in
ISO
(PMID:25310967)
UniProt
PMID:25310967
NCBI chr12:126,418,071...126,448,917
G
ADAR
adenosine deaminase RNA specific
acts_upstream_of_or_within
ISO
(PMID:23209284)
MGI
PMID:23209284
NCBI chr 1:129,937,993...129,983,747
G
AICDA
activation induced cytidine deaminase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:8,688,392...8,699,008
Ensembl chr12:8,904,273...8,913,917
G
CTNNBL1
catenin beta like 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr20:34,015,883...34,192,958
Ensembl chr20:35,129,836...35,306,836
G
POLB
DNA polymerase beta
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:24388753)
Ensembl MGI
PMID:24388753
GO_REF:0000107
NCBI chr 8:41,582,370...41,615,950
Ensembl chr 8:39,026,991...39,060,464
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AICDA
activation induced cytidine deaminase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:8,688,392...8,699,008
Ensembl chr12:8,904,273...8,913,917
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EXO1
exonuclease 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:14716311)
Ensembl MGI
PMID:14716311
GO_REF:0000107
NCBI chr 1:217,410,175...217,451,982
Ensembl chr 1:222,389,684...222,431,556
G
HMCES
5-hydroxymethylcytosine binding, ES cell specific
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:126,339,758...126,367,166
Ensembl chr 3:133,694,676...133,721,519
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MCM3AP
minichromosome maintenance complex component 3 associated protein
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr21:32,577,539...32,629,060
Ensembl chr21:45,828,554...45,878,100
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MLH1
mutL homolog 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10092760), (PMID:10429667)
Ensembl TreeGrafter MGI
PMID:10092760 PMID:10429667
GO_REF:0000107 GO_REF:0000118
NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801
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MSH2
mutS homolog 2
involved_in acts_upstream_of_or_within NOT|acts_upstream_of_or_within
IEA ISO
(PMID:9697842), (PMID:9697843) (PMID:9607916) (PMID:9607915) (PMID:14568978) (PMID:15494304)
Ensembl MGI
PMID:9607915 PMID:9607916 PMID:9697842 PMID:9697843 PMID:14568978 PMID:15494304 More...
GO_REF:0000107
NCBI chr2A:47,524,468...47,602,376
Ensembl chr2A:48,447,207...48,554,461
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MSH3
mutS homolog 3
NOT|acts_upstream_of_or_within
ISO
(PMID:10662804)
MGI
PMID:10662804
NCBI chr 5:34,408,469...34,663,483
Ensembl chr 5:34,719,322...34,938,469
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MSH6
mutS homolog 6
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16618598) (PMID:10662804), (PMID:15238604), (PMID:17015724)
Ensembl MGI
PMID:10662804 PMID:15238604 PMID:16618598 PMID:17015724
GO_REF:0000107
NCBI chr2A:47,901,591...47,926,662
Ensembl chr2A:48,824,350...48,849,779
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NUGGC
nuclear GTPase, germinal center associated
acts_upstream_of_or_within
ISO
(PMID:22833677)
MGI
PMID:22833677
NCBI chr 8:27,299,051...27,351,350
Ensembl chr 8:24,500,131...24,551,201
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PMS2
PMS1 homolog 2, mismatch repair system component
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10429667)
Ensembl TreeGrafter MGI
PMID:10429667
GO_REF:0000107 GO_REF:0000118
NCBI chr 7:7,433,031...7,459,560
Ensembl chr 7:6,167,403...6,202,984
G
POLB
DNA polymerase beta
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:24388753)
Ensembl MGI
PMID:24388753
GO_REF:0000107
NCBI chr 8:41,582,370...41,615,950
Ensembl chr 8:39,026,991...39,060,464
G
POLM
DNA polymerase mu
acts_upstream_of_or_within
ISO
(PMID:15789338)
MGI
PMID:15789338
NCBI chr 7:44,785,797...44,796,624
Ensembl chr 7:44,852,594...44,862,816
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POLQ
DNA polymerase theta
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:118,535,968...118,648,275
Ensembl chr 3:125,446,829...125,559,283
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SAMHD1
SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr20:33,224,200...33,282,018
Ensembl chr20:34,341,367...34,398,314
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UNG
uracil DNA glycosylase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17015724) (PMID:15494304)
Ensembl MGI
PMID:15494304 PMID:17015724
GO_REF:0000107
NCBI chr12:106,674,073...106,687,054
Ensembl chr12:110,067,879...110,080,891
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MLH1
mutL homolog 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:11828012)
Ensembl MGI
PMID:11828012
GO_REF:0000107
NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801
G
MSH2
mutS homolog 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:15494304) (PMID:14568978) (PMID:11828012) (PMID:14563316), (PMID:15955838)
Ensembl MGI
PMID:11828012 PMID:14563316 PMID:14568978 PMID:15494304 PMID:15955838
GO_REF:0000107
NCBI chr2A:47,524,468...47,602,376
Ensembl chr2A:48,447,207...48,554,461
G
MSH3
mutS homolog 3
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:15238604)
MGI TreeGrafter
PMID:15238604
GO_REF:0000118
NCBI chr 5:34,408,469...34,663,483
Ensembl chr 5:34,719,322...34,938,469
G
MSH6
mutS homolog 6
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:15238604)
Ensembl MGI
PMID:15238604
GO_REF:0000107
NCBI chr2A:47,901,591...47,926,662
Ensembl chr2A:48,824,350...48,849,779
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PMS2
PMS1 homolog 2, mismatch repair system component
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:11828012)
Ensembl MGI
PMID:11828012
GO_REF:0000107
NCBI chr 7:7,433,031...7,459,560
Ensembl chr 7:6,167,403...6,202,984
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UNG
uracil DNA glycosylase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:15494304)
Ensembl MGI
PMID:15494304
GO_REF:0000107
NCBI chr12:106,674,073...106,687,054
Ensembl chr12:110,067,879...110,080,891
G
MLH1
mutL homolog 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12743174)
Ensembl MGI
PMID:12743174
GO_REF:0000107
NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801
G
MSH2
mutS homolog 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12743174)
Ensembl TreeGrafter MGI
PMID:12743174
GO_REF:0000107 GO_REF:0000118
NCBI chr2A:47,524,468...47,602,376
Ensembl chr2A:48,447,207...48,554,461
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BCL11B
BCL11 transcription factor B
acts_upstream_of_or_within
ISO
(PMID:12717433)
MGI
PMID:12717433
NCBI chr14:79,795,262...79,898,472
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LEF1
lymphoid enhancer binding factor 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9462507)
Ensembl MGI
PMID:9462507
GO_REF:0000107
NCBI chr 4:100,552,959...100,674,156
Ensembl chr 4:111,125,312...111,245,980
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LIG4
DNA ligase 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10911993)
Ensembl MGI
PMID:10911993
GO_REF:0000107
NCBI chr13:89,336,434...89,347,418
Ensembl chr13:108,475,820...108,478,555
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PRKDC
protein kinase, DNA-activated, catalytic subunit
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9768755)
Ensembl MGI
PMID:9768755
GO_REF:0000107
NCBI chr 8:44,201,391...44,386,803
Ensembl chr 8:41,593,029...41,778,299
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TCF7
transcription factor 7
acts_upstream_of_or_within
ISO
(PMID:9462507)
MGI
PMID:9462507
NCBI chr 5:129,518,134...129,549,972
Ensembl chr 5:135,671,095...135,702,734
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ATM
ATM serine/threonine kinase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23836881)
Ensembl MGI
PMID:23836881
GO_REF:0000107
NCBI chr11:103,109,979...103,256,405
Ensembl chr11:106,584,228...106,727,041
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DCAF1
DDB1 and CUL4 associated factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:51,326,589...51,430,217
Ensembl chr 3:52,560,427...52,663,807
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DCLRE1C
DNA cross-link repair 1C
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23836881)
Ensembl MGI
PMID:23836881
GO_REF:0000107
NCBI chr10:14,901,335...14,956,947
Ensembl chr10:15,236,558...15,269,043
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HMGB1
high mobility group box 1
involved_in
ISO
(PMID:9166431)
UniProt
PMID:9166431
NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527
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LIG1
DNA ligase 1
NOT|involved_in
ISO
(PMID:9809069)
UniProt
PMID:9809069
NCBI chr19:45,056,737...45,110,867
Ensembl chr19:53,706,778...53,761,088
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LIG3
DNA ligase 3
NOT|involved_in
ISO
(PMID:9809069)
UniProt
PMID:9809069
NCBI chr17:21,776,483...21,805,706
Ensembl chr17:22,074,046...22,095,220
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LIG4
DNA ligase 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10716994) (PMID:15194694)
Ensembl MGI
PMID:10716994 PMID:15194694
GO_REF:0000107
NCBI chr13:89,336,434...89,347,418
Ensembl chr13:108,475,820...108,478,555
G
PRKDC
protein kinase, DNA-activated, catalytic subunit
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23836881)
Ensembl MGI
PMID:23836881
GO_REF:0000107
NCBI chr 8:44,201,391...44,386,803
Ensembl chr 8:41,593,029...41,778,299
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RAG1
recombination activating 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:2360047)
Ensembl TreeGrafter MGI UniProt InterPro
PMID:2360047
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118
NCBI chr11:36,483,697...36,546,242
Ensembl chr11:36,412,420...36,422,904
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RAG2
recombination activating 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:2360047)
Ensembl TreeGrafter MGI
PMID:2360047
GO_REF:0000107 GO_REF:0000118
NCBI chr11:36,558,419...36,564,997
Ensembl chr11:36,431,703...36,433,286
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XRCC4
X-ray repair cross complementing 4
acts_upstream_of_or_within
ISO
(PMID:10716994)
MGI
PMID:10716994
NCBI chr 5:31,927,463...32,202,394
Ensembl chr 5:32,246,320...32,521,490
G
XRCC6
X-ray repair cross complementing 6
acts_upstream_of_or_within
ISO
(PMID:10716994)
MGI
PMID:10716994
NCBI chr22:22,516,281...22,557,379
Ensembl chr22:40,603,038...40,643,314
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