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ONTOLOGY REPORT - ANNOTATIONS

Term:phagolysosome assembly
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Accession:GO:0001845 term browser browse the term
Definition:The process that results in the fusion of a phagosome, a vesicle formed by phagocytosis, with a lysosome.
Synonyms:related_synonym: late phagosome biosynthesis;   late phagosome formation;   phagolysosome formation


show annotations for term's descendants           Sort by:
phagolysosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1a coronin 1A involved_in ISO
IEA		 (PMID:12132654)
GO_REF:0000107		 RGD
Ensembl		 PMID:12132654 GO_REF:0000107 NCBI chr 1:190,726,129...190,731,133
Ensembl chr 1:181,295,562...181,300,534 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO
IEA		 MGI:2155422 (PMID:12743369)
GO_REF:0000107		 RGD
Ensembl		 PMID:12743369 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO MGI:3606250 (PMID:11544318) RGD PMID:11544318 NCBI chr12:39,550,531...39,594,984
Ensembl chr12:33,879,745...33,934,619 		JBrowse link
G Rab14 RAB14, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:38,899,430...38,920,572
Ensembl chr 3:18,501,963...18,523,172 		JBrowse link
G Srpx sushi-repeat-containing protein, X-linked involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:3706175 (PMID:19368996)		 GO_Central
Ensembl
RGD		 PMID:19368996 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:15,349,498...15,420,389
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
phagosome-lysosome docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IEA		 (PMID:26450516)
GO_REF:0000107		 RGD
Ensembl		 PMID:26450516 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
phagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ARF like GTPase 8B involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21802320)		 UniProt
Ensembl
RGD		 PMID:21802320 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:143,304,597...143,348,580
Ensembl chr 4:141,748,587...141,792,596 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IEA		 (PMID:26450516)
GO_REF:0000107		 RGD
Ensembl		 PMID:26450516 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO
IEA
IBA		 (PMID:28779020)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:28779020 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:74,057,488...74,151,610
Ensembl chr 9:66,563,727...66,657,868 		JBrowse link
G Pla2g5 phospholipase A2, group V involved_in ISS
ISO		 GO_REF:0000024
(PMID:19342668)		 UniProt
RGD		 PMID:19342668 GO_REF:0000024 NCBI chr 5:156,324,628...156,393,065
Ensembl chr 5:151,041,340...151,062,658 		JBrowse link
G Rab20 RAB20, member RAS oncogene family involved_in ISO
IEA		 (PMID:21255211)
GO_REF:0000107		 RGD
Ensembl		 PMID:21255211 GO_REF:0000107 NCBI chr16:84,721,427...84,745,610
Ensembl chr16:78,019,337...78,043,529 		JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in ISS
ISO
IEA
IBA		 GO_REF:0000024
(PMID:21255211)
GO_REF:0000107
GO_REF:0000033
(PMID:23197834)		 UniProt
RGD
Ensembl
GO_Central		 PMID:21255211 PMID:23197834 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:63,581,542...63,585,608
Ensembl chr10:63,083,338...63,087,538 		JBrowse link
G Rab39a RAB39A, member RAS oncogene family involved_in ISO
IBA
IEA		 (PMID:21255211)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:21255211 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:62,984,434...63,002,053
Ensembl chr 8:54,088,129...54,106,483 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO
ISS
IBA
IEA		 (PMID:21255211)
GO_REF:0000024
GO_REF:0000033
GO_REF:0000107		 RGD
UniProt
GO_Central
Ensembl		 PMID:21255211 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:122,019,281...122,068,067
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Rab7b Rab7b, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:45,673,396...45,699,798
Ensembl chr13:43,121,226...43,147,581 		JBrowse link
G Syt7 synaptotagmin 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16982801)		 UniProt
RGD		 PMID:16982801 GO_REF:0000024 NCBI chr 1:216,456,148...216,518,718
Ensembl chr 1:207,031,592...207,089,026 		JBrowse link
G Tmem175 transmembrane protein 175 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:26317472)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:26317472 GO_REF:0000024 GO_REF:0000107 NCBI chr14:1,217,911...1,234,236
Ensembl chr14:1,073,523...1,089,819 		JBrowse link
phagosome-lysosome fusion involved in apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO
IEA		 MGI:4377985 (PMID:26284655)
GO_REF:0000107		 RGD
Ensembl		 PMID:26284655 GO_REF:0000107 NCBI chr 3:129,453,118...129,526,469
Ensembl chr 3:109,008,135...109,072,911 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      vesicle-mediated transport 1654
        endocytosis 728
          phagocytosis 234
            phagolysosome assembly 17
              phagolysosome assembly involved in apoptotic cell clearance + 1
              phagosome-lysosome docking + 1
              phagosome-lysosome fusion + 12
Path 2
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      cellular component organization or biogenesis 7104
        cellular component organization 6817
          organelle organization 3713
            vacuole organization 236
              lytic vacuole organization 94
                lysosome organization 94
                  phagolysosome assembly 17
                    phagolysosome assembly involved in apoptotic cell clearance + 1
                    phagosome-lysosome docking + 1
                    phagosome-lysosome fusion + 12
paths to the root