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ONTOLOGY REPORT - ANNOTATIONS

Term:cell fate specification
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Accession:GO:0001708 term browser browse the term
Definition:The cellular developmental process involved in cell fate commitment in which the cell is designated to follow a developmental path, unless they receive extrinsic cues that direct an alternative fate.


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cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg2 ATP binding cassette subfamily G member 2 acts_upstream_of_or_within ISO (PMID:28463231) RGD PMID:28463231 NCBI chr 4:89,006,056...89,132,915
Ensembl chr 4:89,005,969...89,132,493 		JBrowse link
G Apc APC regulator of WNT signaling pathway involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:26,138,382...26,196,021
Ensembl chr18:26,102,679...26,197,022 		JBrowse link
G Apc2 APC regulator of WNT signaling pathway 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:10,043,010...10,065,037
Ensembl chr 7:10,043,010...10,065,210 		JBrowse link
G Blvrb biliverdin reductase B acts_upstream_of_or_within ISO (PMID:33359909) RGD PMID:33359909 NCBI chr 1:91,866,258...91,883,921
Ensembl chr 1:91,866,258...91,884,225 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:28463231) 		Ensembl
RGD		 PMID:28463231 GO_REF:0000107 NCBI chr 9:68,685,942...68,801,353
Ensembl chr 9:68,685,988...68,801,350 		JBrowse link
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98297 (PMID:16647304) 		Ensembl
RGD		 PMID:16647304 GO_REF:0000107 NCBI chr 8:42,032,921...42,119,451
Ensembl chr 8:42,033,042...42,119,345 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2148591|MGI:2148594|MGI:2450929 (PMID:15866163)
(PMID:28463231) 		Ensembl
RGD		 PMID:15866163 PMID:28463231 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:129,517,545...129,544,662 		JBrowse link
G Dhh desert hedgehog signaling molecule involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:131,929,857...131,935,352
Ensembl chr 7:131,929,857...131,935,352 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3042750 (PMID:15105374), (PMID:18590716) 		Ensembl
RGD		 PMID:15105374 PMID:18590716 GO_REF:0000107 NCBI chr16:18,929,581...18,936,621
Ensembl chr16:18,929,582...18,936,543 		JBrowse link
G Foxa2 forkhead box A2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
(PMID:18076286) 		ParkinsonsUK-UCL
RGD		 PMID:18076286 GO_REF:0000024 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:155,923,307...155,928,757 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within 		IBA
ISO
IEA 		GO_REF:0000033
MGI:1934258 (PMID:18582859)
GO_REF:0000117
GO_REF:0000107 		GO_Central
RGD
UniProt
Ensembl		 PMID:18582859 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:83,952,986...83,959,203 		JBrowse link
G Itgb1 integrin subunit beta 1 acts_upstream_of_or_within ISO MGI:2154539 (PMID:9004034) RGD PMID:9004034 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:73,602,126...73,650,269 		JBrowse link
G Mga MAX dimerization protein MGA involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:127,300,558...127,396,694
Ensembl chr 3:127,328,264...127,394,826 		JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:38311164) 		Ensembl
RGD		 PMID:38311164 GO_REF:0000107 NCBI chr 1:252,427,356...252,430,309
Ensembl chr 1:252,427,162...252,430,742 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO MGI:2178778 (PMID:15068794) RGD PMID:15068794 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:29,676,171...29,721,613 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2176222|MGI:2661065 (PMID:15888661) RGD PMID:15888661 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:24,422,876...24,432,472 		JBrowse link
G Pou1f1 POU class 1 homeobox 1 acts_upstream_of_or_within ISO (PMID:10367888) RGD PMID:10367888 NCBI chr11:16,763,312...16,781,295
Ensembl chr11:16,763,552...16,781,292 		JBrowse link
G Prdm14 PR/SET domain 14 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3805889 (PMID:18622394) 		Ensembl
RGD		 PMID:18622394 GO_REF:0000107 NCBI chr 5:10,864,137...10,876,666
Ensembl chr 5:10,864,137...10,876,666 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:109284 (PMID:15525534) 		Ensembl
RGD		 PMID:15525534 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:109,060,352...109,106,189 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO MGI:1202717 (PMID:15525534) RGD PMID:15525534 NCBI chr13:94,499,451...94,528,419
Ensembl chr13:94,499,928...94,525,116 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA
IBA 		GO_REF:0000024
MGI:1857796|MGI:1926387 (PMID:12231626), (PMID:16647304), (PMID:18076286)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000033 		UniProt
RGD
Ensembl
GO_Central		 PMID:12231626 PMID:16647304 PMID:18076286 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:7,687,846...7,697,901 		JBrowse link
G Six1 SIX homeobox 1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:97,482,617...97,487,853 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2176255 (PMID:18590716) 		Ensembl
RGD		 PMID:18590716 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:59,311,041...59,341,281 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:2449045 (PMID:12514105) RGD PMID:12514105 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:119,454,541...119,496,350 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:2429649 (PMID:12842915) 		UniProt
RGD		 PMID:12842915 GO_REF:0000024 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:98,305,744...98,311,250 		JBrowse link
G Tbr1 T-box brain transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:66,758,805...66,769,626
Ensembl chr 3:66,759,803...66,769,626 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO
IBA 		GO_REF:0000024
MGI:1351209|MGI:2179191 (PMID:15064766), (PMID:15084464)
GO_REF:0000033 		UniProt
RGD
GO_Central		 PMID:15064766 PMID:15084464 GO_REF:0000024 GO_REF:0000033 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:95,913,610...95,923,392 		JBrowse link
G Tbx10 T-box transcription factor 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:210,714,992...210,722,089
Ensembl chr 1:210,718,894...210,722,089 		JBrowse link
G Tbx15 T-box transcription factor 15 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:189,265,373...189,376,466
Ensembl chr 2:189,265,373...189,376,466 		JBrowse link
G Tbx18 T-box transcription factor 18 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:97,531,960...97,559,988
Ensembl chr 8:97,531,960...97,559,965 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:71,177,082...71,186,275
Ensembl chr10:71,177,082...71,186,275 		JBrowse link
G Tbx20 T-box transcription factor 20 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:31,475,963...31,534,051
Ensembl chr 8:31,475,963...31,534,009 		JBrowse link
G Tbx21 T-box transcription factor 21 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:82,578,751...82,595,253
Ensembl chr10:82,578,751...82,595,253 		JBrowse link
G Tbx22 T-box transcription factor 22 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:76,796,398...76,847,447
Ensembl chr  X:76,825,005...76,847,443 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:42,540,378...42,554,171 		JBrowse link
G Tbx4 T-box transcription factor 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:71,228,145...71,258,222
Ensembl chr10:71,197,727...71,258,218 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:42,342,926...42,399,723
Ensembl chr12:42,348,485...42,395,359 		JBrowse link
G Tbx6 T-box transcription factor 6 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2447721 (PMID:9490412) 		GO_Central
RGD		 PMID:9490412 GO_REF:0000033 NCBI chr 1:190,818,397...190,823,824
Ensembl chr 1:190,819,229...190,823,138 		JBrowse link
G Tbxt T-box transcription factor T involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:54,845,674...54,859,340
Ensembl chr 1:54,845,674...54,853,583 		JBrowse link
G Tead4 TEA domain transcription factor 4 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:106907 (PMID:18083014) 		Ensembl
RGD		 PMID:18083014 GO_REF:0000107 NCBI chr 4:163,180,192...163,258,342
Ensembl chr 4:163,180,192...163,258,479 		JBrowse link
G Tlx3 T-cell leukemia, homeobox 3 acts_upstream_of_or_within ISO MGI:2180105|MGI:98769 (PMID:15064766) RGD PMID:15064766 NCBI chr10:18,293,932...18,296,551
Ensembl chr10:18,293,932...18,296,773 		JBrowse link
auditory receptor cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2155983 (PMID:10364557) 		Ensembl
RGD		 PMID:10364557 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:95,241,933...95,244,019 		JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:14511481) 		Ensembl
RGD		 PMID:14511481 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,911,258...29,919,659 		JBrowse link
blood vessel endothelial cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rbpj recombination signal binding protein for immunoglobulin kappa J region involved_in ISO UniProtKB:P52800 (PMID:15466160) RGD PMID:15466160 NCBI chr14:61,551,366...61,736,220
Ensembl chr14:61,551,366...61,736,307 		JBrowse link
cardiac cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg2 ATP binding cassette subfamily G member 2 acts_upstream_of_or_within ISO (PMID:18787193) RGD PMID:18787193 NCBI chr 4:89,006,056...89,132,915
Ensembl chr 4:89,005,969...89,132,493 		JBrowse link
G Tenm4 teneurin transmembrane protein 4 acts_upstream_of_or_within ISO MGI:3655239 (PMID:17350578) RGD PMID:17350578 NCBI chr 1:157,699,611...160,674,549
Ensembl chr 1:159,974,017...160,674,549 		JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in
acts_upstream_of_or_within 		IBA
ISO
IEA 		GO_REF:0000033
MGI:3774028 (PMID:21245162)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:21245162 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:127,059,215...127,067,070
Ensembl chr 8:127,059,215...127,067,070 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857856 (PMID:18635606) 		Ensembl
RGD		 PMID:18635606 GO_REF:0000107 NCBI chr10:69,233,377...69,287,360
Ensembl chr10:69,233,131...69,287,361 		JBrowse link
G Nanog Nanog homeobox acts_upstream_of_or_within ISO (PMID:20713518) RGD PMID:20713518 NCBI chr 4:157,615,687...157,623,061
Ensembl chr 4:157,615,687...157,623,061 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:20713518) RGD PMID:20713518 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,227,837...3,232,598 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in IEA
ISO 		GO_REF:0000107
(PMID:21305474) 		Ensembl
RGD		 PMID:21305474 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:19,814,360...19,819,854 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:21245162) RGD PMID:21245162 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:119,454,541...119,496,350 		JBrowse link
endothelial cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa13 homeo box A13 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2152356 (PMID:18483557) 		Ensembl
RGD		 PMID:18483557 GO_REF:0000107 NCBI chr 4:82,689,566...82,691,701
Ensembl chr 4:82,689,566...82,691,701 		JBrowse link
endothelial tip cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:22282195) 		UniProt
RGD		 PMID:22282195 GO_REF:0000024 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:64,985,161...64,993,276 		JBrowse link
G Flvcr2 FLVCR choline and putative heme transporter 2 acts_upstream_of_or_within ISO (PMID:32369453) RGD PMID:32369453 NCBI chr 6:111,139,352...111,203,345
Ensembl chr 6:111,139,295...111,203,345 		JBrowse link
epidermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxi3 forkhead box I3 involved_in ISO (PMID:26450968) RGD PMID:26450968 NCBI chr 4:104,491,834...104,496,008
Ensembl chr 4:104,491,759...104,496,008 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:29,676,171...29,721,613 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:1095405 (PMID:24492243)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:24492243 GO_REF:0000107 GO_REF:0000117 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,548,449...1,613,461 		JBrowse link
G Ptch2 patched 2 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:105373 (PMID:24492243)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:24492243 GO_REF:0000107 GO_REF:0000117 NCBI chr 5:135,808,856...135,829,087
Ensembl chr 5:135,808,895...135,828,986 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:1926500|MGI:3583755 (PMID:17079689) RGD PMID:17079689 NCBI chr14:61,551,366...61,736,220
Ensembl chr14:61,551,366...61,736,307 		JBrowse link
glial cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nfia nuclear factor I/A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:6280648 (PMID:31128945) 		Ensembl
RGD		 PMID:31128945 GO_REF:0000107 NCBI chr 5:117,359,006...117,897,391
Ensembl chr 5:117,359,077...117,891,395 		JBrowse link
G Nfib nuclear factor I/B acts_upstream_of_or_within ISO MGI:5052268 (PMID:31128945) RGD PMID:31128945 NCBI chr 5:101,805,168...102,020,618
Ensembl chr 5:101,805,168...102,019,945 		JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO MGI:3802570 (PMID:31128945) RGD PMID:31128945 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:40,260,084...40,353,092 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:98,305,744...98,311,250 		JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:95,017,980...95,021,582
Ensembl chr 1:95,017,687...95,021,457 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 involved_in ISO (PMID:17785448) RGD PMID:17785448 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:9,646,591...9,884,614 		JBrowse link
G Hoxa11 homeobox A11 involved_in IEA
ISO 		GO_REF:0000107
(PMID:17785448) 		Ensembl
RGD		 PMID:17785448 GO_REF:0000107 NCBI chr 4:82,673,139...82,676,801
Ensembl chr 4:82,673,140...82,676,844 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:17785448) 		UniProt
RGD		 PMID:17785448 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:253,555,418...253,645,438 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:171,387,385...171,395,079 		JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (PMID:17785448) RGD PMID:17785448 NCBI chr 6:14,727,756...14,734,219
Ensembl chr 6:14,727,859...14,731,941 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:190,818,397...190,823,824
Ensembl chr 1:190,819,229...190,823,138 		JBrowse link
muscle cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myl2 myosin light chain 2 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
(PMID:1379240) 		GO_Central
RGD		 PMID:1379240 GO_REF:0000033 NCBI chr12:40,114,964...40,126,236
Ensembl chr12:40,114,958...40,129,149 		JBrowse link
negative regulation of cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfi1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO MGI:2449921 (PMID:16230531) RGD PMID:16230531 NCBI chr14:2,185,489...2,204,191
Ensembl chr14:2,187,286...2,196,730 		JBrowse link
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd7 frizzled class receptor 7 involved_in ISO
IEA 		(PMID:18681827)
GO_REF:0000107 		RGD
Ensembl		 PMID:18681827 GO_REF:0000107 NCBI chr 9:68,425,538...68,428,357
Ensembl chr 9:68,411,259...68,432,585 		JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:18593560) 		Ensembl
RGD		 PMID:18593560 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:143,147,671...143,149,189 		JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:237,794,969...237,798,650 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:18593560) 		Ensembl
RGD		 PMID:18593560 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:143,147,671...143,149,189 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98956 (PMID:17462603) 		Ensembl
RGD		 PMID:17462603 GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:171,387,385...171,395,079 		JBrowse link
neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsc goosecoid homeobox involved_in ISO (PMID:24290375) RGD PMID:24290375 NCBI chr 6:129,152,836...129,154,875
Ensembl chr 6:129,152,836...129,154,875 		JBrowse link
neuron fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA 		GO_REF:0000024
(PMID:24243019)
MGI:1857470 (PMID:16469766)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:16469766 PMID:24243019 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:23,790,642...23,793,509
Ensembl chr 7:23,790,360...23,798,231 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:18997111) 		UniProt
RGD		 PMID:18997111 GO_REF:0000024 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:64,985,161...64,993,276 		JBrowse link
G Dmrta2 DMRT-like family A2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21576465) 		Ensembl
RGD		 PMID:21576465 GO_REF:0000107 NCBI chr 5:130,034,473...130,040,283
Ensembl chr 5:130,034,473...130,040,222 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO MGI:4418499 (PMID:24584053) RGD PMID:24584053 NCBI chr20:3,924,263...3,941,238
Ensembl chr20:3,924,263...3,941,384 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:102780 (PMID:22513373) RGD PMID:22513373 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:9,646,591...9,884,614 		JBrowse link
G Fev FEV transcription factor, ETS family member acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2449922 (PMID:20818386) 		Ensembl
RGD		 PMID:20818386 GO_REF:0000107 NCBI chr 9:83,887,844...83,891,718
Ensembl chr 9:83,887,844...83,891,737 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr16:18,929,581...18,936,621
Ensembl chr16:18,929,582...18,936,543 		JBrowse link
G Foxa1 forkhead box A1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1347476 (PMID:17596284) 		Ensembl
RGD		 PMID:17596284 GO_REF:0000107 NCBI chr 6:80,838,380...80,871,195
Ensembl chr 6:80,800,960...80,871,191 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1347472|MGI:2176222|MGI:2177337 (PMID:17596284), (PMID:17922007) RGD PMID:17596284 PMID:17922007 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:155,923,307...155,928,757 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2150162 (PMID:15930101) 		Ensembl
RGD		 PMID:15930101 GO_REF:0000107 NCBI chr14:33,477,968...33,480,320
Ensembl chr14:33,477,968...33,480,320 		JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in IEA
IBA
ISO 		GO_REF:0000002
GO_REF:0000033
GO_REF:0000107
(PMID:18849985) 		InterPro
GO_Central
Ensembl
RGD		 PMID:18849985 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:49,813,618...49,823,442
Ensembl chr 2:49,813,618...49,823,442 		JBrowse link
G Isl2 ISL LIM homeobox 2 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 8:64,819,879...64,824,864
Ensembl chr 8:64,819,879...64,824,864 		JBrowse link
G Mir125a microRNA 125a involved_in ISO (PMID:22357933) RGD PMID:22357933 NCBI chr 1:67,350,675...67,350,759
Ensembl chr 1:67,350,675...67,350,759 		JBrowse link
G Myt1l myelin transcription factor 1-like involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:24243019), (PMID:28379941)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:24243019 PMID:28379941 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:51,892,858...52,291,830
Ensembl chr 6:52,155,754...52,291,828 		JBrowse link
G Nfia nuclear factor I/A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:6280648 (PMID:31128945) 		Ensembl
RGD		 PMID:31128945 GO_REF:0000107 NCBI chr 5:117,359,006...117,897,391
Ensembl chr 5:117,359,077...117,891,395 		JBrowse link
G Nfib nuclear factor I/B acts_upstream_of_or_within ISO MGI:5052268 (PMID:31128945) RGD PMID:31128945 NCBI chr 5:101,805,168...102,020,618
Ensembl chr 5:101,805,168...102,019,945 		JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO MGI:3802570 (PMID:31128945) RGD PMID:31128945 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:40,260,084...40,353,092 		JBrowse link
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1932100|MGI:97451 (PMID:16339193), (PMID:19592574) 		Ensembl
RGD		 PMID:16339193 PMID:19592574 GO_REF:0000107 NCBI chr 3:155,072,621...155,083,699
Ensembl chr 3:155,073,250...155,083,249 		JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 IMP RGD PMID:15247919 RGD:2325628 NCBI chr 1:141,526,192...141,913,575
Ensembl chr 1:141,542,569...141,913,004 		JBrowse link
G Pou3f2 POU class 3 homeobox 2 involved_in IEA
ISS
ISO 		GO_REF:0000107
GO_REF:0000024
(PMID:24243019) 		Ensembl
UniProt
RGD		 PMID:24243019 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:40,874,631...40,880,539
Ensembl chr 5:40,874,601...40,881,010 		JBrowse link
G Pou4f1 POU class 4 homeobox 1 involved_in ISO (PMID:19877281), (PMID:20096094) RGD PMID:19877281 PMID:20096094 NCBI chr15:87,668,328...87,674,643
Ensembl chr15:87,668,328...87,674,643 		JBrowse link
G Prdm12 PR/SET domain 12 involved_in IEA
ISO 		GO_REF:0000107
(PMID:30917305) 		Ensembl
RGD		 PMID:30917305 GO_REF:0000107 NCBI chr 3:35,322,962...35,341,878
Ensembl chr 3:35,322,962...35,341,878 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:109344 (PMID:22513373) 		Ensembl
RGD		 PMID:22513373 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:97,482,617...97,487,853 		JBrowse link
G Smad4 SMAD family member 4 involved_in IEA
ISO 		GO_REF:0000107
(PMID:22357933) 		Ensembl
RGD		 PMID:22357933 GO_REF:0000107 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:69,518,988...69,549,684 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:98,305,744...98,311,250 		JBrowse link
G Tlx3 T-cell leukemia, homeobox 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:104867 (PMID:16234809) 		Ensembl
RGD		 PMID:16234809 GO_REF:0000107 NCBI chr10:18,293,932...18,296,551
Ensembl chr10:18,293,932...18,296,773 		JBrowse link
oligodendrocyte cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Olig2 oligodendrocyte transcription factor 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:43,961,585...43,964,961
Ensembl chr11:43,958,940...43,968,634 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856155 (PMID:9828088) 		Ensembl
RGD		 PMID:9828088 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:112,590,391...112,611,763 		JBrowse link
G Sox6 SRY-box transcription factor 6 acts_upstream_of_or_within ISO MGI:2447148 (PMID:17084361) RGD PMID:17084361 NCBI chr 1:179,157,678...179,769,243
Ensembl chr 1:179,163,566...179,711,727 		JBrowse link
positive regulation of cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO
IEA 		(PMID:18635606)
GO_REF:0000107 		RGD
Ensembl		 PMID:18635606 GO_REF:0000107 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:122,164,454...122,224,493 		JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO MGI:2449921 (PMID:16230531) RGD PMID:16230531 NCBI chr14:2,185,489...2,204,191
Ensembl chr14:2,187,286...2,196,730 		JBrowse link
G Pax6 paired box 6 IMP RGD PMID:11880342 RGD:729590 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:112,590,391...112,611,763 		JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a Wnt family member 3A involved_in ISO
IEA 		(PMID:20559569)
GO_REF:0000107 		RGD
Ensembl		 PMID:20559569 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,533,734...44,577,919 		JBrowse link
regulation of cardiac cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox17 SRY-box transcription factor 17 involved_in IEA
ISO 		GO_REF:0000107
(PMID:17360443) 		Ensembl
RGD		 PMID:17360443 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:19,814,360...19,819,854 		JBrowse link
regulation of cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lmo4 LIM domain only 4 acts_upstream_of_or_within ISO MGI:3664560 (PMID:19323994) RGD PMID:19323994 NCBI chr 2:235,924,574...235,941,609
Ensembl chr 2:235,924,403...235,941,275 		JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:237,794,969...237,798,650 		JBrowse link
regulation of inner ear auditory receptor cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esrp1 epithelial splicing regulatory protein 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:29107558) 		UniProt
RGD		 PMID:29107558 GO_REF:0000024 NCBI chr 5:29,224,831...29,279,381
Ensembl chr 5:29,225,360...29,279,278 		JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:95522 (PMID:16943278) 		Ensembl
RGD		 PMID:16943278 GO_REF:0000107 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,742,875...9,786,861 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1338938 (PMID:16943278) 		Ensembl
RGD		 PMID:16943278 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:73,194,631...73,249,855 		JBrowse link
regulation of neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A NOT|involved_in ISO (PMID:15073157) RGD PMID:15073157 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,742,875...9,786,861 		JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:15215207) RGD PMID:15215207 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:32,499,678...32,716,418 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:255,199,164...255,296,981 		JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:255,199,164...255,296,981 		JBrowse link
spinal cord association neuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lbx1 ladybird homeobox 1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:254,033,009...254,034,826
Ensembl chr 1:254,033,009...254,034,826 		JBrowse link
spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
G Hoxc10 homeo box C10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:96202 (PMID:18065432) 		Ensembl
RGD		 PMID:18065432 GO_REF:0000107 NCBI chr 7:135,982,222...135,987,442
Ensembl chr 7:135,982,065...135,986,712 		JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:96192 (PMID:18065432) 		Ensembl
RGD		 PMID:18065432 GO_REF:0000107 NCBI chr 3:80,001,947...80,005,156
Ensembl chr 3:80,001,689...80,005,156 		JBrowse link
G Isl1 ISL LIM homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:102673 (PMID:19666821) 		Ensembl
RGD		 PMID:19666821 GO_REF:0000107 NCBI chr 2:49,813,618...49,823,442
Ensembl chr 2:49,813,618...49,823,442 		JBrowse link
G Isl2 ISL LIM homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:102673 (PMID:19666821) 		Ensembl
RGD		 PMID:19666821 GO_REF:0000107 NCBI chr 8:64,819,879...64,824,864
Ensembl chr 8:64,819,879...64,824,864 		JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:101791|MGI:109156 (PMID:19666821) 		Ensembl
RGD		 PMID:19666821 GO_REF:0000107 NCBI chr 3:29,424,620...29,432,637
Ensembl chr 3:29,424,620...29,432,637 		JBrowse link
G Lmo4 LIM domain only 4 involved_in ISO (PMID:18539116) RGD PMID:18539116 NCBI chr 2:235,924,574...235,941,609
Ensembl chr 2:235,924,403...235,941,275 		JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 involved_in
acts_upstream_of_or_within 		IBA
ISO
IEA 		GO_REF:0000033
(PMID:18539116)
MGI:2182358|MGI:2182361|MGI:2182363 (PMID:10482234)
GO_REF:0000002 		GO_Central
RGD
InterPro		 PMID:10482234 PMID:18539116 GO_REF:0000002 GO_REF:0000033 NCBI chr 4:6,541,645...6,546,604
Ensembl chr 4:6,541,645...6,546,604 		JBrowse link
G Nkx6-1 NK6 homeobox 1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr14:8,274,238...8,281,171
Ensembl chr14:8,274,238...8,281,163 		JBrowse link
G Nkx6-2 NK6 homeobox 2 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:203,811,582...203,813,122
Ensembl chr 1:203,811,582...203,813,122 		JBrowse link
G Olig3 oligodendrocyte transcription factor 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3573868 (PMID:15769945) 		Ensembl
RGD		 PMID:15769945 GO_REF:0000107 NCBI chr 1:15,900,881...15,902,953
Ensembl chr 1:15,900,736...15,902,274 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:112,590,391...112,611,763 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:255,199,164...255,296,981 		JBrowse link
spinal cord oligodendrocyte cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857470 (PMID:18287202) 		Ensembl
RGD		 PMID:18287202 GO_REF:0000107 NCBI chr 7:23,790,642...23,793,509
Ensembl chr 7:23,790,360...23,798,231 		JBrowse link
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:18287202) 		Ensembl
RGD		 PMID:18287202 GO_REF:0000107 NCBI chr 3:155,072,621...155,083,699
Ensembl chr 3:155,073,250...155,083,249 		JBrowse link
G Olig2 oligodendrocyte transcription factor 2 acts_upstream_of_or_within ISO (PMID:18287202) RGD PMID:18287202 NCBI chr11:43,961,585...43,964,961
Ensembl chr11:43,958,940...43,968,634 		JBrowse link
stem cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmrta2 DMRT-like family A2 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 5:130,034,473...130,040,283
Ensembl chr 5:130,034,473...130,040,222 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:171,387,385...171,395,079 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:20228271) 		Ensembl
RGD		 PMID:20228271 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:19,814,360...19,819,854 		JBrowse link
G Sox18 SRY-box transcription factor 18 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:20228271) 		Ensembl
RGD		 PMID:20228271 GO_REF:0000107 NCBI chr 3:189,163,000...189,164,802
Ensembl chr 3:189,163,002...189,164,802 		JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2182329 (PMID:11239429) 		Ensembl
RGD		 PMID:11239429 GO_REF:0000107 NCBI chr 1:108,484,846...108,490,381
Ensembl chr 1:108,484,863...108,490,381 		JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4420993 (PMID:22932389) 		Ensembl
RGD		 PMID:22932389 GO_REF:0000107 NCBI chr 1:232,670,642...232,690,557
Ensembl chr 1:232,675,059...232,688,833 		JBrowse link
G Evx1 even-skipped homeobox 1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 4:82,747,192...82,751,569
Ensembl chr 4:82,746,993...82,751,569 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:19666821) 		Ensembl
RGD		 PMID:19666821 GO_REF:0000107 NCBI chr 3:29,424,620...29,432,637
Ensembl chr 3:29,424,620...29,432,637 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:112,590,391...112,611,763 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within IDA PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:7,687,846...7,697,901 		JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO MGI:3653406 (PMID:20844123) RGD PMID:20844123 NCBI chr16:83,837,689...83,841,703
Ensembl chr16:83,802,160...83,841,775 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:255,199,164...255,296,981 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    cellular process 18484
      cellular developmental process 4933
        cell fate specification 112
          abaxial cell fate specification 0
          anther wall tapetum cell fate specification 0
          bundle sheath cell fate specification 0
          cardiac cell fate specification + 3
          cell fate specification involved in pattern specification + 9
          compound eye cone cell fate specification + 0
          ectodermal cell fate specification + 1
          endodermal cell fate specification + 8
          endothelial cell fate specification + 4
          eosinophil fate specification 0
          epidermal cell fate specification + 5
          epithelial cell type specification, open tracheal system + 0
          glial cell fate specification + 9
          mesodermal cell fate specification + 13
          muscle cell fate specification + 1
          myoblast fate specification + 0
          negative regulation of cell fate specification + 5
          neuroblast fate specification 0
          neuron fate specification + 46
          plant endodermal cell fate specification 0
          plant epidermal cell fate specification + 0
          positive regulation of cell fate specification + 4
          regulation of cell fate specification + 13
          skeletal muscle satellite cell fate specification 0
          stem cell fate specification + 6
          vulval cell fate specification 0
Path 2
Term Annotations click to browse term
  biological_process 19315
    cellular process 18484
      cellular developmental process 4933
        cell differentiation 4932
          cell fate commitment 298
            cell fate specification 112
              abaxial cell fate specification 0
              anther wall tapetum cell fate specification 0
              bundle sheath cell fate specification 0
              cardiac cell fate specification + 3
              cell fate specification involved in pattern specification + 9
              compound eye cone cell fate specification + 0
              ectodermal cell fate specification + 1
              endodermal cell fate specification + 8
              endothelial cell fate specification + 4
              eosinophil fate specification 0
              epidermal cell fate specification + 5
              epithelial cell type specification, open tracheal system + 0
              glial cell fate specification + 9
              mesodermal cell fate specification + 13
              muscle cell fate specification + 1
              myoblast fate specification + 0
              negative regulation of cell fate specification + 5
              neuroblast fate specification 0
              neuron fate specification + 46
              plant endodermal cell fate specification 0
              plant epidermal cell fate specification + 0
              positive regulation of cell fate specification + 4
              regulation of cell fate specification + 13
              skeletal muscle satellite cell fate specification 0
              stem cell fate specification + 6
              vulval cell fate specification 0
paths to the root