ONTOLOGY REPORT - ANNOTATIONS
Term: osteoblast differentiation
Accession: GO:0001649
browse the term
Definition: The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone.
Synonyms: exact_synonym: osteoblast cell differentiation
G
Actn3
actinin alpha 3
NOT|involved_in
ISO
(PMID:21784188)
RGD
PMID:21784188
NCBI chr 1:202,159,081...202,175,012
Ensembl chr 1:202,159,082...202,175,012
G
Acvr1
activin A receptor type 1
involved_in
ISO IEA
(PMID:18436533) GO_REF:0000107
RGD Ensembl
PMID:18436533
GO_REF:0000107
NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241
G
Acvr2a
activin A receptor type 2A
involved_in
ISO IEA
(PMID:18436533) GO_REF:0000107
RGD Ensembl
PMID:18436533
GO_REF:0000107
NCBI chr 3:33,204,961...33,292,673
Ensembl chr 3:33,205,523...33,289,968
G
Adar
adenosine deaminase, RNA-specific
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2182767|MGI:3032439 (PMID:23123729)
Ensembl RGD
PMID:23123729
GO_REF:0000107
NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282
G
Akt1
AKT serine/threonine kinase 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:22869525) MGI:88177|MGI:96440 (PMID:19208758)
Ensembl RGD
PMID:19208758 PMID:22869525
GO_REF:0000107
NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921
G
Asf1a
anti-silencing function 1A histone chaperone
acts_upstream_of_or_within
ISO
MGI:1097686|MGI:1101768 (PMID:22705305)
RGD
PMID:22705305
NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808
G
Axin2
axin 2
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 MGI:3579503 (PMID:15790973)
Ensembl RGD
PMID:15790973
GO_REF:0000107
NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231
G
Bglap
bone gamma-carboxyglutamate protein
involved_in
TAS IBA ISO IEP
GO_REF:0000033 (PMID:17023519)
GO_Central RGD
PMID:17023519 PMID:15456860 PMID:20022632
GO_REF:0000033, RGD:1578394 , RGD:2316140
NCBI chr 2:173,838,518...173,839,495
Ensembl chr 2:173,838,518...173,839,495
G
Bmp2
bone morphogenetic protein 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:20551513), (PMID:7798324) MGI:101948|MGI:1922667|MGI:87986|MGI:88182|MGI:96440|MGI:99829 (PMID:15565649), (PMID:16109715), (PMID:19208758), (PMID:19213727) (PMID:15254224), (PMID:18436533), (PMID:20576608), (PMID:23399447) (PMID:15150273), (PMID:22705305)
Ensembl RGD
PMID:7798324 PMID:15150273 PMID:15254224 PMID:15565649 PMID:16109715 PMID:18436533 PMID:19208758 PMID:19213727 PMID:20551513 PMID:20576608 PMID:22705305 PMID:23399447 More...
GO_REF:0000107
NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
G
Bmp3
bone morphogenetic protein 3
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr14:10,712,489...10,737,153
Ensembl chr14:10,712,489...10,737,153
G
Bmp4
bone morphogenetic protein 4
involved_in acts_upstream_of_or_within
ISO ISS IEA
(PMID:17720811) (PMID:15381701) GO_REF:0000024 GO_REF:0000107
RGD UniProt Ensembl
PMID:15381701 PMID:17720811
GO_REF:0000024 GO_REF:0000107
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
G
Bmp6
bone morphogenetic protein 6
acts_upstream_of_or_within
IEP ISO
MGI:88177 (PMID:16109715)
RGD
PMID:16109715 PMID:11995934
RGD:2289023
NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365
G
Bmp7
bone morphogenetic protein 7
involved_in
ISO
(PMID:18436533)
RGD
PMID:18436533
NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
G
Bmp8a
bone morphogenetic protein 8a
involved_in
ISO
(PMID:12925636)
RGD
PMID:12925636
NCBI chr 5:135,589,839...135,617,785
Ensembl chr 5:135,591,716...135,617,785
G
Bmpr1a
bone morphogenetic protein receptor type 1A
involved_in
ISO
(PMID:7798324)
RGD
PMID:7798324
NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
G
Bmpr1b
bone morphogenetic protein receptor type 1B
involved_in
ISO
(PMID:28214897) (PMID:20551513)
RGD
PMID:20551513 PMID:28214897
NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
G
Bmpr2
bone morphogenetic protein receptor type 2
involved_in
ISO
(PMID:22684006) (PMID:7798324)
RGD
PMID:7798324 PMID:22684006
NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
G
Cbfb
core-binding factor subunit beta
acts_upstream_of_or_within
ISO
MGI:2447293 (PMID:12434156)
RGD
PMID:12434156
NCBI chr19:33,049,162...33,092,752
Ensembl chr19:33,049,172...33,092,751
G
Ccl3
C-C motif chemokine ligand 3
involved_in
ISS ISO
GO_REF:0000024 (PMID:21403648)
UniProt RGD
PMID:21403648
GO_REF:0000024
NCBI chr10:68,451,388...68,452,938
Ensembl chr10:68,451,388...68,452,938
G
Ccn1
cellular communication network factor 1
acts_upstream_of_or_within
ISO
MGI:98956 (PMID:16581771)
RGD
PMID:16581771
NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484
G
Ccn4
cellular communication network factor 4
involved_in
IEA ISO
GO_REF:0000107 (PMID:15331410)
Ensembl RGD
PMID:15331410
GO_REF:0000107
NCBI chr 7:98,645,238...98,677,253
Ensembl chr 7:98,645,182...98,677,248
G
Chrd
chordin
acts_upstream_of_or_within
ISO
(PMID:15381701)
RGD
PMID:15381701
NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673
G
Col11a2
collagen type XI alpha 2 chain
IEP
RGD
PMID:11780999
RGD:1342432
NCBI chr20:4,786,932...4,816,598
Ensembl chr20:4,786,929...4,815,985
G
Col1a1
collagen type I alpha 1 chain
involved_in
ISO
(PMID:16311053)
RGD
PMID:16311053
NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
G
Creb3l1
cAMP responsive element binding protein 3-like 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:19767743)
UniProt RGD
PMID:19767743
GO_REF:0000024
NCBI chr 3:77,952,589...77,993,513
Ensembl chr 3:77,952,540...77,993,456
G
Cthrc1
collagen triple helix repeat containing 1
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 MGI:3830252 (PMID:18779865)
Ensembl RGD
PMID:18779865
GO_REF:0000107
NCBI chr 7:70,122,474...70,132,756
Ensembl chr 7:70,122,474...70,132,756
G
Ctnnb1
catenin beta 1
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 MGI:2148591|MGI:2148594|MGI:2450929 (PMID:15866163) (PMID:24023731)
Ensembl RGD
PMID:15866163 PMID:24023731
GO_REF:0000107
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
G
Cyp24a1
cytochrome P450, family 24, subfamily a, polypeptide 1
involved_in
ISO
(PMID:17023519)
RGD
PMID:17023519
NCBI chr 3:159,275,947...159,290,383
Ensembl chr 3:159,275,947...159,290,383
G
Dhh
desert hedgehog signaling molecule
acts_upstream_of_or_within
ISO
(PMID:25639508)
RGD
PMID:25639508
NCBI chr 7:130,050,910...130,056,406
Ensembl chr 7:130,050,910...130,056,406
G
Dlk1
delta like non-canonical Notch ligand 1
acts_upstream_of_or_within
ISO
MGI:3526402 (PMID:21308776)
RGD
PMID:21308776
NCBI chr 6:128,410,216...128,417,518
Ensembl chr 6:128,410,316...128,417,522
G
Dlx5
distal-less homeobox 5
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:15383550) GO_REF:0000024
Ensembl RGD UniProt
PMID:15383550
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:34,999,139...35,003,504
Ensembl chr 4:34,999,139...35,003,407
G
Enpp1
ectonucleotide pyrophosphatase/phosphodiesterase 1
involved_in
ISO
MGI:2183411|MGI:2385534 (PMID:15920156), (PMID:21930712)
RGD
PMID:15920156 PMID:21930712
NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
G
Epha2
Eph receptor A2
involved_in
ISO
(PMID:19299512)
RGD
PMID:19299512
NCBI chr 5:153,605,644...153,634,115
Ensembl chr 5:153,605,644...153,634,117
G
Fgf2
fibroblast growth factor 2
acts_upstream_of
ISO
MGI:95729 (PMID:20570969)
RGD
PMID:20570969
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
G
Fgf9
fibroblast growth factor 9
acts_upstream_of_or_within
ISO
MGI:2135961 (PMID:17544391)
RGD
PMID:17544391
NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309
G
Fhl2
four and a half LIM domains 2
involved_in
IEA ISO
GO_REF:0000107 (PMID:16311053)
Ensembl RGD
PMID:16311053
GO_REF:0000107
NCBI chr 9:45,388,979...45,462,421
Ensembl chr 9:45,388,981...45,431,192
G
Fignl1
fidgetin-like 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:17352653)
UniProt RGD
PMID:17352653
GO_REF:0000024
NCBI chr14:86,368,670...86,381,728
Ensembl chr14:86,368,675...86,377,455
G
Fosl2
FOS like 2, AP-1 transcription factor subunit
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3757560 (PMID:20837772), (PMID:30181393)
Ensembl RGD
PMID:20837772 PMID:30181393
GO_REF:0000107
NCBI chr 6:24,297,898...24,319,219
Ensembl chr 6:24,300,956...24,320,034
G
Fto
FTO, alpha-ketoglutarate dependent dioxygenase
IMP
RGD
PMID:35006515
RGD:329951011
NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083
G
Gabbr1
gamma-aminobutyric acid type B receptor subunit 1
IMP
RGD
PMID:12054677
RGD:625463
NCBI chr20:1,464,534...1,494,114
Ensembl chr20:1,464,534...1,493,994
G
Gas5
growth arrest specific 5
acts_upstream_of_or_within
ISO
(PMID:33006314)
RGD
PMID:33006314
NCBI chr13:73,303,611...73,306,932
G
Gdf10
growth differentiation factor 10
involved_in
IEP IEA
GO_REF:0000002
InterPro RGD
PMID:15994055
GO_REF:0000002, RGD:2316368
NCBI chr16:9,237,182...9,250,537
Ensembl chr16:9,237,261...9,249,343
G
Gdf2
growth differentiation factor 2
acts_upstream_of_or_within
ISO
MGI:1341800|MGI:96396|MGI:96397|MGI:96398 (PMID:15161906), (PMID:18986983)
RGD
PMID:15161906 PMID:18986983
NCBI chr16:9,255,430...9,261,429
Ensembl chr16:9,255,430...9,261,429
G
Gja1
gap junction protein, alpha 1
acts_upstream_of_or_within
ISO
MGI:1857177|MGI:2445468|MGI:3776013 (PMID:12606326), (PMID:21934140)
RGD
PMID:12606326 PMID:21934140
NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582
G
Gli1
GLI family zinc finger 1
involved_in
ISO
(PMID:12165851)
RGD
PMID:12165851
NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251
G
Gli2
GLI family zinc finger 2
involved_in acts_upstream_of_or_within
ISO
(PMID:12165851) MGI:1915509 (PMID:22771375)
RGD
PMID:12165851 PMID:22771375
NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574
G
Gli3
GLI family zinc finger 3
acts_upstream_of
ISO
MGI:1856276|MGI:95516 (PMID:20570969)
RGD
PMID:20570969
NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
G
Glis1
GLIS family zinc finger 1
involved_in
ISO
(PMID:30544251)
RGD
PMID:30544251
NCBI chr 5:122,222,155...122,412,141
Ensembl chr 5:122,222,128...122,412,141
G
Gpnmb
glycoprotein nmb
IEP
RGD
PMID:11746512
RGD:632991
NCBI chr 4:78,010,247...78,031,491
Ensembl chr 4:78,010,197...78,049,367
G
H3f3a
H3.3 histone A
acts_upstream_of_or_within
ISO
MGI:1101768|MGI:1913653|MGI:99430 (PMID:22705305)
RGD
PMID:22705305
NCBI chr13:92,533,289...92,544,902
Ensembl chr13:92,533,298...92,544,908
G
H3f3b
H3.3 histone B
acts_upstream_of_or_within
ISO
MGI:1097686|MGI:1913653|MGI:99430 (PMID:22705305)
RGD
PMID:22705305
NCBI chr10:101,256,484...101,258,716
Ensembl chr10:101,256,480...101,258,709 Ensembl chr13:101,256,480...101,258,709
G
Hand2
heart and neural crest derivatives expressed 2
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 MGI:2653307 (PMID:19144722)
Ensembl RGD
PMID:19144722
GO_REF:0000107
NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891
G
Hdac4
histone deacetylase 4
acts_upstream_of
ISO
(PMID:15990875)
RGD
PMID:15990875
NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164
G
Hdac5
histone deacetylase 5
acts_upstream_of
ISO
(PMID:15990875)
RGD
PMID:15990875
NCBI chr10:87,152,978...87,187,921
Ensembl chr10:87,152,978...87,188,235
G
Hira
histone cell cycle regulator
acts_upstream_of_or_within
ISO
MGI:1097686|MGI:1101768|MGI:3650546 (PMID:22705305)
RGD
PMID:22705305
NCBI chr11:82,024,469...82,133,212
Ensembl chr11:82,024,469...82,133,529
G
Id4
inhibitor of DNA binding 4
acts_upstream_of_or_within
ISO
(PMID:20628571)
RGD
PMID:20628571
NCBI chr17:16,389,387...16,391,956
Ensembl chr17:16,389,387...16,392,470
G
Ift80
intraflagellar transport 80
acts_upstream_of_or_within
ISO
MGI:3689350|MGI:5818514|MGI:95728 (PMID:22771375), (PMID:26996322)
RGD
PMID:22771375 PMID:26996322
NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024
G
Igf1
insulin-like growth factor 1
involved_in
ISO
(PMID:16311053)
RGD
PMID:16311053
NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
G
Igf2
insulin-like growth factor 2
involved_in
ISO
(PMID:16311053)
RGD
PMID:16311053
NCBI chr 1:197,814,409...197,831,802
Ensembl chr 1:197,814,410...197,823,018
G
Igfbp2
insulin-like growth factor binding protein 2
involved_in
ISO
(PMID:26773517)
RGD
PMID:26773517
NCBI chr 9:74,415,574...74,442,945
Ensembl chr 9:74,415,546...74,442,937
G
Igfbp3
insulin-like growth factor binding protein 3
involved_in
IEA ISO
GO_REF:0000107 (PMID:16311053)
Ensembl RGD
PMID:16311053
GO_REF:0000107
NCBI chr14:82,056,347...82,064,083
Ensembl chr14:82,056,347...82,064,083
G
Igfbp5
insulin-like growth factor binding protein 5
involved_in
ISO
(PMID:16311053)
RGD
PMID:16311053
NCBI chr 9:74,452,371...74,464,953
Ensembl chr 9:74,448,382...74,465,156
G
Ihh
Indian hedgehog signaling molecule
acts_upstream_of_or_within
ISO
MGI:1928765|MGI:1934258 (PMID:14973297), (PMID:25639508)
RGD
PMID:14973297 PMID:25639508
NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
G
Il18
interleukin 18
IEP
RGD
PMID:18165223
RGD:4889468
NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887
G
Junb
JunB proto-oncogene, AP-1 transcription factor subunit
acts_upstream_of_or_within
ISO
MGI:2176174|MGI:3036209 (PMID:14769860)
RGD
PMID:14769860
NCBI chr19:23,176,265...23,178,049
Ensembl chr19:23,176,294...23,178,035
G
Lef1
lymphoid enhancer binding factor 1
involved_in
ISO IEA
(PMID:20128911) GO_REF:0000107
RGD Ensembl
PMID:20128911
GO_REF:0000107
NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794
G
Lgr4
leucine-rich repeat-containing G protein-coupled receptor 4
involved_in
ISS ISO
GO_REF:0000024 (PMID:19605502)
UniProt RGD
PMID:19605502
GO_REF:0000024
NCBI chr 3:96,447,385...96,550,006
Ensembl chr 3:96,447,858...96,548,899
G
Lox
lysyl oxidase
acts_upstream_of_or_within
ISO
MGI:3610732 (PMID:19458888)
RGD
PMID:19458888
NCBI chr18:45,964,544...45,977,431
Ensembl chr18:45,967,343...46,041,477
G
Lrrc17
leucine rich repeat containing 17
NOT|involved_in
ISO
(PMID:19336404)
RGD
PMID:19336404
NCBI chr 4:13,501,428...13,531,845
Ensembl chr 4:13,501,436...13,531,845
G
Map2k6
mitogen-activated protein kinase kinase 6
involved_in
ISO
(PMID:20551513)
RGD
PMID:20551513
NCBI chr10:95,373,304...95,490,406
Ensembl chr10:95,373,204...95,488,293
G
Map3k7
mitogen activated protein kinase kinase kinase 7
involved_in
ISO
MGI:3696052 (PMID:20551513)
RGD
PMID:20551513
NCBI chr 5:46,356,973...46,415,597
Ensembl chr 5:46,357,931...46,415,597
G
Mapk11
mitogen-activated protein kinase 11
involved_in
ISO
(PMID:20551513)
RGD
PMID:20551513
NCBI chr 7:120,218,471...120,225,488
Ensembl chr 7:120,218,478...120,225,395
G
Mapk14
mitogen activated protein kinase 14
involved_in
IEA ISO
GO_REF:0000107 MGI:3696052 (PMID:20551513)
Ensembl RGD
PMID:20551513
GO_REF:0000107
NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589
G
Mef2c
myocyte enhancer factor 2C
acts_upstream_of_or_within involved_in
ISO
MGI:99533 (PMID:17336904) (PMID:21652706)
RGD
PMID:17336904 PMID:21652706
NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
G
Mef2d
myocyte enhancer factor 2D
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:99458 (PMID:17336904)
Ensembl RGD
PMID:17336904
GO_REF:0000107
NCBI chr 2:173,606,054...173,635,620
Ensembl chr 2:173,606,490...173,634,457
G
Mir346
microRNA 346
involved_in
ISO
(PMID:24023731)
RGD
PMID:24023731
NCBI chr16:10,218,118...10,218,215
Ensembl chr16:10,218,118...10,218,215
G
Mmp13
matrix metallopeptidase 13
IEP
RGD
PMID:10528234
RGD:10043160
NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239
G
Msx2
msh homeobox 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:15383550)
UniProt RGD
PMID:15383550
GO_REF:0000024
NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
G
Myoc
myocilin
involved_in
ISS ISO IBA IEA
GO_REF:0000024 (PMID:23629661) GO_REF:0000033 GO_REF:0000107
UniProt RGD GO_Central Ensembl
PMID:23629661
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr13:74,976,730...74,987,128
Ensembl chr13:74,976,730...74,987,127
G
Nf1
neurofibromin 1
involved_in acts_upstream_of_or_within
IEA ISO ISS
GO_REF:0000107 MGI:1857478 (PMID:16893911) GO_REF:0000024
Ensembl RGD HGNC-UCL
PMID:16893911
GO_REF:0000024 GO_REF:0000107
NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658
G
Nog
noggin
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:10780858) GO_REF:0000024
Ensembl RGD UniProt
PMID:10780858
GO_REF:0000024 GO_REF:0000107
NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
G
Nr1i3
nuclear receptor subfamily 1, group I, member 3
IEP
RGD
PMID:19702932
RGD:9835391
NCBI chr13:83,632,940...83,638,193
Ensembl chr13:83,632,899...83,637,906
G
Panx3
pannexin 3
involved_in
ISS ISO
GO_REF:0000024 (PMID:21690309)
UniProt RGD
PMID:21690309
GO_REF:0000024
NCBI chr 8:37,366,758...37,377,640
Ensembl chr 8:37,366,862...37,377,640
G
Pcp4
Purkinje cell protein 4
IEP
RGD
PMID:18008138
RGD:9850248
NCBI chr11:35,759,711...35,861,725
Ensembl chr11:35,800,713...35,861,725
G
Penk
proenkephalin
IEP
RGD
PMID:8584038
RGD:10003035
NCBI chr 5:17,183,799...17,189,160
Ensembl chr 5:17,183,806...17,189,129
G
Ptprb
protein tyrosine phosphatase, receptor type, B
involved_in
ISO
(PMID:22869525)
RGD
PMID:22869525
NCBI chr 7:51,953,375...52,034,751
Ensembl chr 7:51,930,015...52,034,748
G
Rack1
receptor for activated C kinase 1
involved_in
HDA
PMID:16210410
UniProt
PMID:16210410
RGD:8655526
NCBI chr10:33,169,415...33,174,896
Ensembl chr10:33,169,169...33,174,975
G
Rps11
ribosomal protein S11
involved_in
HDA
PMID:16210410
UniProt
PMID:16210410
RGD:8655526
NCBI chr 1:95,605,690...95,607,798
Ensembl chr 1:95,605,692...95,607,874
G
Rspo2
R-spondin 2
acts_upstream_of_or_within
ISO
MGI:88177 (PMID:19213727)
RGD
PMID:19213727
NCBI chr 7:74,096,378...74,239,398
Ensembl chr 7:74,103,090...74,238,933
G
Runx2
RUNX family transcription factor 2
acts_upstream_of_or_within involved_in
IMP ISO
MGI:1917649|MGI:2183833|MGI:88177 (PMID:15389629), (PMID:15565649), (PMID:16099986) (PMID:21930712) RNAcentral:URS0000446722_9606 (PMID:20128911), (PMID:25012146)
RGD
PMID:15389629 PMID:15565649 PMID:16099986 PMID:20128911 PMID:21930712 PMID:25012146 PMID:19940863 More...
RGD:12880052
NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
G
Sfrp1
secreted frizzled-related protein 1
involved_in
IEA IEP ISO
GO_REF:0000107 PMID:16149051 (PMID:16149051)
Ensembl RGD
PMID:16149051 PMID:16149051
GO_REF:0000107, RGD:4107087
NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286
G
Shox2
SHOX homeobox 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3626291 (PMID:18514492)
Ensembl RGD
PMID:18514492
GO_REF:0000107
NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143
G
Sirt7
sirtuin 7
involved_in
ISS ISO
GO_REF:0000024 (PMID:30026585)
UniProt RGD
PMID:30026585
GO_REF:0000024
NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
G
Smad1
SMAD family member 1
involved_in
ISO
(PMID:7798324) (PMID:34948289)
RGD
PMID:7798324 PMID:34948289
NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
G
Smad3
SMAD family member 3
involved_in
ISO
(PMID:11585338)
RGD
PMID:11585338
NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
G
Smad4
SMAD family member 4
IMP
RGD
PMID:19940863
RGD:12880052
NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438
G
Smad5
SMAD family member 5
involved_in
ISO
(PMID:30378100), (PMID:34948289)
RGD
PMID:30378100 PMID:34948289
NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634
G
Smad9
SMAD family member 9
involved_in
ISO
(PMID:34948289)
RGD
PMID:34948289
NCBI chr 2:138,956,326...139,006,315
Ensembl chr 2:138,986,471...139,006,307
G
Smo
smoothened, frizzled class receptor
acts_upstream_of_or_within involved_in
IEP ISO IEA
MGI:2176256 (PMID:14973297) GO_REF:0000107
RGD Ensembl
PMID:14973297 PMID:19649528
GO_REF:0000107, RGD:2324984
NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829
G
Snai1
snail family transcriptional repressor 1
involved_in
ISO
(PMID:20128911)
RGD
PMID:20128911
NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969
G
Snai2
snail family transcriptional repressor 2
involved_in
ISO
(PMID:20128911)
RGD
PMID:20128911
NCBI chr11:86,182,788...86,186,203
Ensembl chr11:86,181,909...86,186,200
G
Sox2
SRY-box transcription factor 2
involved_in acts_upstream_of
ISO
(PMID:18187129) (PMID:15781477)
RGD
PMID:15781477 PMID:18187129
NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
G
Sox8
SRY-box transcription factor 8
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:2154329 (PMID:15753123)
UniProt RGD
PMID:15753123
GO_REF:0000024
NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818
G
Sp7
Sp7 transcription factor
involved_in acts_upstream_of_or_within
ISO
(PMID:18932205) MGI:2159411 (PMID:11792318)
RGD
PMID:11792318 PMID:18932205
NCBI chr 7:133,484,609...133,494,788
Ensembl chr 7:133,484,609...133,494,847
G
Spp1
secreted phosphoprotein 1
involved_in
IMP IBA
GO_REF:0000033
GO_Central RGD
PMID:15598896
GO_REF:0000033, RGD:1581126
NCBI chr14:5,308,885...5,315,120
Ensembl chr14:5,308,885...5,315,162
G
Tgfbr3
transforming growth factor beta receptor 3
acts_upstream_of_or_within
ISO
(PMID:25382630)
RGD
PMID:25382630
NCBI chr14:2,489,397...2,665,383
Ensembl chr14:2,489,397...2,663,341
G
Tmem119
transmembrane protein 119
acts_upstream_of_or_within
ISO
(PMID:21239498)
RGD
PMID:21239498
NCBI chr12:42,828,621...42,835,678
Ensembl chr12:42,828,418...42,835,689
G
Tmsb4x
thymosin beta 4, X-linked
IEP
RGD
PMID:2325669
RGD:729958
NCBI chr X:27,144,666...27,146,667
Ensembl chr X:27,128,610...27,146,667 Ensembl chr10:27,128,610...27,146,667
G
Tmt1a
thiol methyltransferase 1A
involved_in
ISO
(PMID:34226523)
RGD
PMID:34226523
NCBI chr 7:131,452,099...131,460,154
Ensembl chr 7:131,451,641...131,460,154
G
Tp53inp2
tumor protein p53 inducible nuclear protein 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:21467300)
Ensembl RGD
PMID:21467300
GO_REF:0000107
NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:143,882,021...143,890,097
G
Twist1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
ISO
MGI:1857265|MGI:3038818 (PMID:15030764)
RGD
PMID:15030764
NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
G
Twist2
twist family bHLH transcription factor 2
acts_upstream_of_or_within
ISO
MGI:3044412 (PMID:15030764)
RGD
PMID:15030764
NCBI chr 9:92,374,740...92,419,222
Ensembl chr 9:92,374,574...92,419,222
G
Ucma
upper zone of growth plate and cartilage matrix associated
acts_upstream_of
ISO
(PMID:18156182)
RGD
PMID:18156182
NCBI chr17:73,293,977...73,303,709
Ensembl chr17:73,293,978...73,303,611
G
Wnt10b
Wnt family member 10B
acts_upstream_of
ISO
(PMID:19723499)
RGD
PMID:19723499
NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892
G
Wnt11
Wnt family member 11
acts_upstream_of_or_within
ISO
MGI:1922667|MGI:88177 (PMID:19213727)
RGD
PMID:19213727
NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294
G
Wnt3a
Wnt family member 3A
acts_upstream_of_or_within
ISO
MGI:88613 (PMID:16581771)
RGD
PMID:16581771
NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324
G
Wnt7b
Wnt family member 7B
acts_upstream_of
ISO
(PMID:15576404)
RGD
PMID:15576404
NCBI chr 7:116,634,817...116,679,459
Ensembl chr 7:116,634,814...116,679,581
G
Wwox
WW domain-containing oxidoreductase
acts_upstream_of_or_within
ISO
MGI:3704944 (PMID:18487609)
RGD
PMID:18487609
NCBI chr19:42,432,141...43,360,278
Ensembl chr19:42,432,152...43,359,391
G
Wwtr1
WW domain containing transcription regulator 1
acts_upstream_of_or_within
ISO
MGI:88177 (PMID:16099986)
RGD
PMID:16099986
NCBI chr 2:141,651,159...141,766,919
Ensembl chr 2:141,648,108...141,766,968
G
Ahr
aryl hydrocarbon receptor
IDA
RGD
PMID:12193573
RGD:625678
NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568
G
Areg
amphiregulin
IDA
RGD
PMID:15509566
RGD:1578718
NCBI chr14:16,972,185...16,981,443
Ensembl chr14:16,972,187...16,981,535
G
Axin2
axin 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3579503 (PMID:15790973)
Ensembl RGD
PMID:15790973
GO_REF:0000107
NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231
G
Bambi
BMP and activin membrane-bound inhibitor
acts_upstream_of
ISO
(PMID:21042576), (PMID:21743293)
RGD
PMID:21042576 PMID:21743293
NCBI chr17:54,121,251...54,125,816
Ensembl chr17:54,121,255...54,126,060
G
Cdk6
cyclin-dependent kinase 6
involved_in
ISO
(PMID:15254224)
RGD
PMID:15254224
NCBI chr 4:30,637,650...30,829,688
Ensembl chr 4:30,646,460...30,829,634
G
Chrd
chordin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:15780974) (PMID:18533030)
Ensembl RGD
PMID:15780974 PMID:18533030
GO_REF:0000107
NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673
G
Cited1
Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1
involved_in
ISO
(PMID:18187554)
RGD
PMID:18187554
NCBI chr X:67,350,376...67,355,072
Ensembl chr X:67,350,373...67,355,162
G
Crim1
cysteine rich transmembrane BMP regulator 1
acts_upstream_of
ISO
(PMID:21042576), (PMID:21743293)
RGD
PMID:21042576 PMID:21743293
NCBI chr 6:16,695,864...16,870,264
Ensembl chr 6:16,697,829...16,870,259
G
Erfe
erythroferrone
involved_in
ISS ISO
GO_REF:0000024 (PMID:34002695)
UniProt RGD
PMID:34002695
GO_REF:0000024
NCBI chr 9:91,956,971...91,964,846
Ensembl chr 9:91,956,977...91,964,846
G
Fgf23
fibroblast growth factor 23
involved_in
ISO
(PMID:18282132)
RGD
PMID:18282132
NCBI chr 4:159,914,267...159,923,821
Ensembl chr 4:159,914,272...159,923,821
G
Fgfr1
Fibroblast growth factor receptor 1
IMP
RGD
PMID:18690792
RGD:2325179
NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350
G
Fndc3b
fibronectin type III domain containing 3B
acts_upstream_of_or_within
ISO
MGI:4822558 (PMID:20493170)
RGD
PMID:20493170
NCBI chr 2:110,311,439...110,617,504
Ensembl chr 2:110,312,694...110,547,830
G
Grem1
gremlin 1, DAN family BMP antagonist
involved_in acts_upstream_of_or_within
ISO ISS IMP
(PMID:27036124) GO_REF:0000024 PMID:27910957
RGD UniProt
PMID:27036124 PMID:27910957
GO_REF:0000024, RGD:38501075
NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082
G
Gsk3b
glycogen synthase kinase 3 beta
involved_in
IEA ISO
GO_REF:0000107 (PMID:24023731)
Ensembl RGD
PMID:24023731
GO_REF:0000107
NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
G
Hand2
heart and neural crest derivatives expressed 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2653307 (PMID:19144722)
Ensembl RGD
PMID:19144722
GO_REF:0000107
NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891
G
Hdac4
histone deacetylase 4
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:15990875)
Ensembl RGD
PMID:15990875
GO_REF:0000107
NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164
G
Hdac5
histone deacetylase 5
acts_upstream_of_or_within
ISO
(PMID:15990875)
RGD
PMID:15990875
NCBI chr10:87,152,978...87,187,921
Ensembl chr10:87,152,978...87,188,235
G
Hdac7
histone deacetylase 7
involved_in
ISO IEA
(PMID:17997710) GO_REF:0000107
RGD Ensembl
PMID:17997710
GO_REF:0000107
NCBI chr 7:128,923,918...128,961,926
Ensembl chr 7:128,923,920...128,962,072
G
Hdac8
histone deacetylase 8
IMP
RGD
PMID:25019367
RGD:13208813
NCBI chr X:67,385,288...67,593,014
Ensembl chr X:67,385,289...67,592,923
G
Hoxa2
homeobox A2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:21324897)
Ensembl RGD
PMID:21324897
GO_REF:0000107
NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044
G
Id1
inhibitor of DNA binding 1
acts_upstream_of_or_within
ISO
MGI:1321394 (PMID:15161906)
RGD
PMID:15161906
NCBI chr 3:141,210,666...141,212,420
Ensembl chr 3:141,211,267...141,212,419
G
Id2
inhibitor of DNA binding 2
acts_upstream_of_or_within
ISO
MGI:1321394 (PMID:15246553)
RGD
PMID:15246553
NCBI chr 6:41,740,556...41,742,393
Ensembl chr 6:41,728,946...41,744,400
G
Id3
inhibitor of DNA binding 3
acts_upstream_of_or_within
ISO
MGI:1321394 (PMID:15161906)
RGD
PMID:15161906
NCBI chr 5:148,372,784...148,374,353
Ensembl chr 5:148,372,762...148,374,349
G
Igfbp5
insulin-like growth factor binding protein 5
acts_upstream_of_or_within
ISO
MGI:87986|MGI:88177 (PMID:19208758)
RGD
PMID:19208758
NCBI chr 9:74,452,371...74,464,953
Ensembl chr 9:74,448,382...74,465,156
G
Ipo7
importin 7
involved_in
ISO
(PMID:35922041)
RGD
PMID:35922041
NCBI chr 1:164,062,702...164,102,938
Ensembl chr 1:164,062,702...164,102,938
G
Limd1
LIM domain containing 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:18657804)
UniProt RGD
PMID:18657804
GO_REF:0000024
NCBI chr 8:123,121,363...123,168,476
Ensembl chr 8:123,122,460...123,167,714
G
Lrp5
LDL receptor related protein 5
involved_in
ISO
(PMID:17680723)
RGD
PMID:17680723
NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
G
Men1
menin 1
acts_upstream_of_or_within involved_in
ISO IEA
MGI:1316736 (PMID:15563473) MGI:96648 (PMID:15150273), (PMID:15563473) GO_REF:0000107
RGD Ensembl
PMID:15150273 PMID:15563473
GO_REF:0000107
NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
G
Mir100
microRNA 100
acts_upstream_of
ISO
(PMID:22684006)
RGD
PMID:22684006
NCBI chr 8:41,901,225...41,901,304
Ensembl chr 8:41,901,225...41,901,304
G
Mir106a
microRNA 106a
acts_upstream_of_or_within
ISO
(PMID:23399447)
RGD
PMID:23399447
NCBI chr X:132,422,584...132,422,661
Ensembl chr X:132,422,584...132,422,661
G
Mir125a
microRNA 125a
IMP
RGD
PMID:29319166
RGD:26884461
NCBI chr 1:58,677,626...58,677,710
Ensembl chr 1:58,677,626...58,677,710
G
Mir125b1
microRNA 125b-1
acts_upstream_of
ISO
(PMID:28214897)
RGD
PMID:28214897
NCBI chr 8:41,952,966...41,953,052
Ensembl chr 8:41,952,966...41,953,052
G
Mir125b2
microRNA 125b-2
acts_upstream_of
ISO
(PMID:28214897)
RGD
PMID:28214897
NCBI chr11:16,245,620...16,245,707
G
Mir133a1
microRNA 133a-1
acts_upstream_of_or_within
ISO
(PMID:21628588)
RGD
PMID:21628588
NCBI chr18:1,885,082...1,885,168
G
Mir137
microRNA 137
acts_upstream_of_or_within
ISO
(PMID:21628588)
RGD
PMID:21628588
NCBI chr 2:206,480,881...206,480,982
Ensembl chr 2:206,480,884...206,480,985
G
Mir138-1
microRNA 138-1
involved_in
ISO
(PMID:21444814)
RGD
PMID:21444814
NCBI chr 8:122,300,966...122,301,064
Ensembl chr 8:122,300,966...122,301,064
G
Mir138-2
microRNA 138-2
involved_in
ISO
(PMID:21444814)
RGD
PMID:21444814
NCBI chr19:10,674,193...10,674,274
Ensembl chr19:10,674,193...10,674,274
G
Mir140
microRNA 140
acts_upstream_of
ISO
UniProtKB:P12643 (PMID:24928442)
RGD
PMID:24928442
NCBI chr19:35,465,577...35,465,675
Ensembl chr19:35,465,577...35,465,675
G
Mir17
microRNA 17
acts_upstream_of_or_within
ISO
UniProtKB:P12643 (PMID:23399447)
RGD
PMID:23399447
NCBI chr15:92,180,629...92,180,712
Ensembl chr15:92,180,629...92,180,712
G
Mir18a
microRNA 18a
involved_in
ISO
(PMID:34937502)
RGD
PMID:34937502
NCBI chr15:98,587,984...98,588,079
Ensembl chr15:92,180,765...92,180,860
G
Mir204
microRNA 204
acts_upstream_of_or_within
IMP ISO
(PMID:21628588)
RGD
PMID:21628588 PMID:29319166
RGD:26884461
NCBI chr 1:220,316,931...220,317,040
Ensembl chr 1:220,316,931...220,317,040
G
Mir205
microRNA 205
acts_upstream_of acts_upstream_of_or_within
ISO
UniProtKB:Q13950|UniProtKB:Q15797 (PMID:25012146) (PMID:21628588)
RGD
PMID:21628588 PMID:25012146
NCBI chr13:105,035,878...105,035,985
Ensembl chr13:105,035,878...105,035,985
G
Mir214
microRNA 214
acts_upstream_of acts_upstream_of_or_within
ISO
(PMID:30703347) (PMID:20534588)
RGD
PMID:20534588 PMID:30703347
NCBI chr13:74,588,374...74,588,481
Ensembl chr13:74,588,372...74,588,481
G
Mir217
microRNA 217
acts_upstream_of_or_within
ISO
(PMID:21628588)
RGD
PMID:21628588
NCBI chr14:102,531,505...102,531,609
Ensembl chr14:102,531,505...102,531,609
G
Mir221
microRNA 221
IMP
RGD
PMID:32194220
RGD:152025220
NCBI chr X:3,429,465...3,429,573
Ensembl chr X:3,429,465...3,429,573
G
Mir222
microRNA 222
IMP
RGD
PMID:32194220
RGD:152025220
NCBI chr X:3,428,904...3,429,006
Ensembl chr X:3,428,904...3,429,006
G
Mir23a
microRNA 23a
acts_upstream_of_or_within
ISO
(PMID:21628588)
RGD
PMID:21628588
NCBI chr19:23,954,997...23,955,071
Ensembl chr19:23,954,997...23,955,071
G
Mir24-2
microRNA 24-2
involved_in
ISO
(PMID:30378100)
RGD
PMID:30378100
NCBI chr19:23,954,683...23,954,790
Ensembl chr19:23,954,683...23,954,790
G
Mir30b
microRNA 30b
involved_in
ISO
(PMID:23968872)
RGD
PMID:23968872
NCBI chr 7:100,132,589...100,132,675
Ensembl chr 7:100,132,589...100,132,675
G
Mir30c1
microRNA 30c-1
acts_upstream_of_or_within
ISO
(PMID:21628588)
RGD
PMID:21628588
NCBI chr 5:134,349,237...134,349,325
Ensembl chr 5:134,349,237...134,349,325
G
Mir30c2
microRNA 30c-2
acts_upstream_of_or_within
ISO
(PMID:21628588)
RGD
PMID:21628588
NCBI chr 9:25,757,342...25,757,425
Ensembl chr 9:25,757,342...25,757,425
G
Mir320a
microRNA 320a
involved_in
ISO
(PMID:32271402)
RGD
PMID:32271402
NCBI chr15:45,516,392...45,516,473
Ensembl chr15:45,516,392...45,516,473
G
Mir3582
microRNA 3582
acts_upstream_of_or_within
ISO
(PMID:21628588)
RGD
PMID:21628588
NCBI chr18:1,885,063...1,885,180
Ensembl chr18:1,885,063...1,885,180
G
Mir93
microRNA 93
acts_upstream_of
ISO
(PMID:28797104)
RGD
PMID:28797104
NCBI chr12:17,043,135...17,043,221
Ensembl chr12:17,043,135...17,043,221
G
Mir98
microRNA 98
acts_upstream_of_or_within
ISO
(PMID:27860183)
RGD
PMID:27860183
NCBI chr X:20,981,235...20,981,342
Ensembl chr X:20,981,235...20,981,342
G
Nbr1
NBR1, autophagy cargo receptor
involved_in
IEA ISO
GO_REF:0000107 (PMID:20616007)
Ensembl RGD
PMID:20616007
GO_REF:0000107
NCBI chr10:86,477,775...86,506,418
Ensembl chr10:86,478,290...86,506,412
G
Nfatc1
nuclear factor of activated T-cells 1
acts_upstream_of_or_within
ISO
(PMID:19463978)
RGD
PMID:19463978
NCBI chr18:74,046,422...74,156,041
Ensembl chr18:74,046,904...74,156,028
G
Noct
nocturnin
involved_in
ISS ISO
GO_REF:0000024 (PMID:20498072)
UniProt RGD
PMID:20498072
GO_REF:0000024
NCBI chr 2:135,271,189...135,291,407
Ensembl chr 2:135,271,189...135,291,400
G
Nog
noggin
involved_in
IEA ISO
GO_REF:0000107 (PMID:20675382)
Ensembl RGD
PMID:20675382
GO_REF:0000107
NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
G
Notch1
notch receptor 1
involved_in
ISO
(PMID:19695258)
RGD
PMID:19695258
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
G
Ostn
osteocrin
acts_upstream_of_or_within
ISO
(PMID:14523025)
RGD
PMID:14523025
NCBI chr11:73,442,167...73,478,498
Ensembl chr11:73,442,487...73,468,603
G
Pparg
peroxisome proliferator-activated receptor gamma
acts_upstream_of
ISO
(PMID:21042576), (PMID:21743293)
RGD
PMID:21042576 PMID:21743293
NCBI chr 4:150,095,743...150,221,104
Ensembl chr 4:148,423,194...148,548,468
G
Ptch1
patched 1
involved_in
ISO
(PMID:16229683)
RGD
PMID:16229683
NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333
G
Pten
phosphatase and tensin homolog
involved_in
ISO
(PMID:22869525)
RGD
PMID:22869525
NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838
G
Ranbp3l
RAN binding protein 3-like
involved_in
ISO
(PMID:25755279)
RGD
PMID:25755279
NCBI chr 2:58,057,887...58,113,158
Ensembl chr 2:58,058,263...58,113,172
G
Riox1
ribosomal oxygenase 1
involved_in
ISO
(PMID:19927124)
RGD
PMID:19927124
NCBI chr 6:103,579,642...103,582,260
Ensembl chr 6:103,579,642...103,582,250
G
Rorb
RAR-related orphan receptor B
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:22189870) GO_REF:0000024
Ensembl RGD UniProt
PMID:22189870
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
G
Sema4d
semaphorin 4D
involved_in
ISO
(PMID:22019888)
RGD
PMID:22019888
NCBI chr17:13,430,324...13,537,146
Ensembl chr17:13,430,379...13,537,138
G
Sfrp1
secreted frizzled-related protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3045799 (PMID:14976225)
Ensembl RGD
PMID:14976225
GO_REF:0000107
NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286
G
Ski
Ski proto-oncogene
involved_in
ISO
(PMID:14699069)
RGD
PMID:14699069
NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
G
Smad3
SMAD family member 3
acts_upstream_of_or_within
ISO
MGI:1316736 (PMID:15150273)
RGD
PMID:15150273
NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
G
Smad6
SMAD family member 6
involved_in
ISO
(PMID:22275001)
RGD
PMID:22275001
NCBI chr 8:64,450,114...64,519,673
Ensembl chr 8:64,450,114...64,519,763
G
Sox2
SRY-box transcription factor 2
acts_upstream_of_or_within
ISO
(PMID:15781477)
RGD
PMID:15781477
NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
G
Sox9
SRY-box transcription factor 9
involved_in
ISS ISO
GO_REF:0000024 (PMID:22421045), (PMID:31121357), (PMID:32103177)
UniProt RGD
PMID:22421045 PMID:31121357 PMID:32103177
GO_REF:0000024
NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
G
Tmem53
transmembrane protein 53
involved_in
ISO
(PMID:33824347)
RGD
PMID:33824347
NCBI chr 5:130,721,780...130,737,692
Ensembl chr 5:130,721,659...130,737,692
G
Tmem64
transmembrane protein 64
involved_in
ISO
(PMID:25979161)
RGD
PMID:25979161
NCBI chr 5:28,698,947...28,745,384
Ensembl chr 5:28,698,918...28,745,330
G
Tnf
tumor necrosis factor
involved_in
ISO
(PMID:21689636)
RGD
PMID:21689636
NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,622,011...3,624,629
G
Tnfaip6
TNF alpha induced protein 6
involved_in
ISO
(PMID:16771708), (PMID:18586671)
RGD
PMID:16771708 PMID:18586671
NCBI chr 3:36,502,250...36,521,652
Ensembl chr 3:36,502,188...36,521,649
G
Tnn
tenascin N
involved_in
ISO
(PMID:17395156)
RGD
PMID:17395156
NCBI chr13:72,319,160...72,386,362
Ensembl chr13:72,319,155...72,408,156
G
Tob1
transducer of ErbB-2.1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1933294 (PMID:11163184)
Ensembl RGD
PMID:11163184
GO_REF:0000107
NCBI chr10:79,163,093...79,165,131
Ensembl chr10:79,160,154...79,165,215
G
Trpm4
transient receptor potential cation channel, subfamily M, member 4
IMP
RGD
PMID:23081848
RGD:10003033
NCBI chr 1:95,781,805...95,812,095
Ensembl chr 1:95,782,000...95,812,532
G
Twist1
twist family bHLH transcription factor 1
involved_in acts_upstream_of_or_within
ISO
(PMID:16888803) (PMID:15030764)
RGD
PMID:15030764 PMID:16888803
NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
G
Twist2
twist family bHLH transcription factor 2
involved_in acts_upstream_of_or_within
ISO ISS
(PMID:11062344) MGI:3044412 (PMID:15030764) GO_REF:0000024
RGD UniProt
PMID:11062344 PMID:15030764
GO_REF:0000024
NCBI chr 9:92,374,740...92,419,222
Ensembl chr 9:92,374,574...92,419,222
G
Twsg1
twisted gastrulation BMP signaling modulator 1
acts_upstream_of_or_within
ISO
(PMID:15780974)
RGD
PMID:15780974
NCBI chr 9:105,533,116...105,567,460
Ensembl chr 9:105,533,136...105,567,479
G
Ucma
upper zone of growth plate and cartilage matrix associated
acts_upstream_of_or_within
ISO
(PMID:18156182)
RGD
PMID:18156182
NCBI chr17:73,293,977...73,303,709
Ensembl chr17:73,293,978...73,303,611
G
Vegfc
vascular endothelial growth factor C
involved_in
ISO
(PMID:26934950)
RGD
PMID:26934950
NCBI chr16:37,712,251...37,827,845
Ensembl chr16:37,712,262...37,827,848
G
Ache
acetylcholinesterase
involved_in
ISO IEA
(PMID:15454088) GO_REF:0000107
RGD Ensembl
PMID:15454088
GO_REF:0000107
NCBI chr12:19,406,133...19,413,713
Ensembl chr12:19,407,360...19,413,651
G
Cebpa
CCAAT/enhancer binding protein alpha
IEP
RGD
PMID:1377818
RGD:69946
NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412
G
Clec5a
C-type lectin domain containing 5A
involved_in
ISO
(PMID:19251634)
RGD
PMID:19251634
NCBI chr 4:69,407,125...69,416,872
Ensembl chr 4:69,407,835...69,416,859
G
Esr1
estrogen receptor 1
IEP
RGD
PMID:9528993
RGD:2313676
NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002
G
Gli2
GLI family zinc finger 2
acts_upstream_of_or_within
ISO
(PMID:16880529)
RGD
PMID:16880529
NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574
G
Hdac4
histone deacetylase 4
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:15990875)
Ensembl RGD
PMID:15990875
GO_REF:0000107
NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164
G
Hdac5
histone deacetylase 5
acts_upstream_of_or_within
ISO
(PMID:15990875)
RGD
PMID:15990875
NCBI chr10:87,152,978...87,187,921
Ensembl chr10:87,152,978...87,188,235
G
Hey1
hes-related family bHLH transcription factor with YRPW motif 1
acts_upstream_of_or_within
ISO
MGI:99829 (PMID:18986983)
RGD
PMID:18986983
NCBI chr 2:93,096,605...93,100,316
Ensembl chr 2:93,095,498...93,100,312
G
Hoxa2
homeobox A2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2679336 (PMID:16751105)
Ensembl RGD
PMID:16751105
GO_REF:0000107
NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044
G
Jund
JunD proto-oncogene, AP-1 transcription factor subunit
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1316736 (PMID:15563473)
Ensembl RGD
PMID:15563473
GO_REF:0000107
NCBI chr16:18,734,121...18,735,799
Ensembl chr16:18,734,122...18,735,799
G
Limd1
LIM domain containing 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:17092936), (PMID:18657804)
UniProt RGD
PMID:17092936 PMID:18657804
GO_REF:0000024
NCBI chr 8:123,121,363...123,168,476
Ensembl chr 8:123,122,460...123,167,714
G
Lrp5
LDL receptor related protein 5
acts_upstream_of_or_within involved_in
ISO
MGI:3612485 (PMID:16790443) (PMID:17700537)
RGD
PMID:16790443 PMID:17700537
NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
G
Men1
menin 1
acts_upstream_of_or_within involved_in
ISO IEA
MGI:1316736 (PMID:15563473) MGI:1201674|MGI:96648 (PMID:15150273), (PMID:15563473) GO_REF:0000107
RGD Ensembl
PMID:15150273 PMID:15563473
GO_REF:0000107
NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
G
Msx2
msh homeobox 2
acts_upstream_of_or_within involved_in
IEP ISO IEA
MGI:1926381 (PMID:10742104) GO_REF:0000107
RGD Ensembl
PMID:10742104 PMID:11336915
GO_REF:0000107, RGD:5132630
NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
G
Pth1r
parathyroid hormone 1 receptor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2154519 (PMID:9832460)
Ensembl RGD
PMID:9832460
GO_REF:0000107
NCBI chr 8:110,693,910...110,725,458
Ensembl chr 8:110,697,485...110,719,729
G
Pthlh
parathyroid hormone-like hormone
involved_in acts_upstream_of_or_within
TAS IBA ISO
GO_REF:0000033 MGI:2154515 (PMID:9832460)
GO_Central RGD
PMID:9832460 PMID:12706025
GO_REF:0000033, RGD:1601570
NCBI chr 4:180,188,792...180,199,847
Ensembl chr 4:180,188,792...180,199,847
G
Runx2
RUNX family transcription factor 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1341800 (PMID:18986983)
Ensembl RGD
PMID:18986983
GO_REF:0000107
NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
G
Satb2
SATB homeobox 2
acts_upstream_of_or_within
ISO
MGI:3692768|MGI:96174 (PMID:16751105)
RGD
PMID:16751105
NCBI chr 9:58,348,027...58,534,256
Ensembl chr 9:58,350,246...58,530,707
G
Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:16880529)
Ensembl RGD
PMID:16880529
GO_REF:0000107
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
G
Smad3
SMAD family member 3
acts_upstream_of_or_within
ISO
MGI:1316736 (PMID:15150273)
RGD
PMID:15150273
NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
G
Tnn
tenascin N
involved_in
ISO
(PMID:17395156)
RGD
PMID:17395156
NCBI chr13:72,319,160...72,386,362
Ensembl chr13:72,319,155...72,408,156
G
Men1
menin 1
acts_upstream_of_or_within
ISO
MGI:109452|MGI:1328787|MGI:99829 (PMID:15150273)
RGD
PMID:15150273
NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
G
Runx2
RUNX family transcription factor 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1316736 (PMID:15150273)
Ensembl RGD
PMID:15150273
GO_REF:0000107
NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
G
Sh3pxd2b
SH3 and PX domains 2B
involved_in
ISO
(PMID:27711054)
RGD
PMID:27711054
NCBI chr10:16,918,611...17,027,499
Ensembl chr10:16,918,679...17,005,170
G
Smad1
SMAD family member 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1316736 (PMID:15150273)
Ensembl RGD
PMID:15150273
GO_REF:0000107
NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
G
Smad5
SMAD family member 5
acts_upstream_of_or_within
ISO
MGI:1316736 (PMID:15150273)
RGD
PMID:15150273
NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634
G
Acvr1
activin A receptor type 1
involved_in
ISO IEA
(PMID:18436533) GO_REF:0000107
RGD Ensembl
PMID:18436533
GO_REF:0000107
NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241
G
Acvr2a
activin A receptor type 2A
involved_in
ISO IEA
(PMID:18436533) GO_REF:0000107
RGD Ensembl
PMID:18436533
GO_REF:0000107
NCBI chr 3:33,204,961...33,292,673
Ensembl chr 3:33,205,523...33,289,968
G
Acvr2b
activin A receptor type 2B
involved_in
ISO
(PMID:18436533)
RGD
PMID:18436533
NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458
G
Atraid
all-trans retinoic acid-induced differentiation factor
involved_in
ISO
(PMID:21723284)
RGD
PMID:21723284
NCBI chr 6:25,315,236...25,319,821
G
Bmp2
bone morphogenetic protein 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:20675382) (PMID:15175325), (PMID:16099986)
Ensembl RGD
PMID:15175325 PMID:16099986 PMID:20675382
GO_REF:0000107
NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
G
Bmp4
bone morphogenetic protein 4
acts_upstream_of_or_within involved_in
IMP ISO ISS IEA IDA
(PMID:14749725) (PMID:18436533) GO_REF:0000024 GO_REF:0000107
RGD UniProt Ensembl
PMID:14749725 PMID:18436533 PMID:17112416 PMID:16245174
GO_REF:0000024 GO_REF:0000107, RGD:1643600 , RGD:2289011
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
G
Bmp6
bone morphogenetic protein 6
involved_in
IMP ISO
(PMID:18436533)
RGD
PMID:18436533 PMID:9202223
RGD:2289027
NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365
G
Bmp7
bone morphogenetic protein 7
involved_in
ISO
(PMID:18436533)
RGD
PMID:18436533
NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
G
Bmpr1a
bone morphogenetic protein receptor type 1A
involved_in
ISO
(PMID:18436533)
RGD
PMID:18436533
NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
G
Bmpr1b
bone morphogenetic protein receptor type 1B
involved_in
ISO
(PMID:18436533)
RGD
PMID:18436533
NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
G
Bmpr2
bone morphogenetic protein receptor type 2
involved_in
ISO
(PMID:18436533)
RGD
PMID:18436533
NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
G
Ccn1
cellular communication network factor 1
involved_in
ISO IEA
(PMID:20675382) GO_REF:0000107
RGD Ensembl
PMID:20675382
GO_REF:0000107
NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484
G
Ccn4
cellular communication network factor 4
involved_in
ISO IEA
(PMID:20684029) GO_REF:0000107
RGD Ensembl
PMID:20684029
GO_REF:0000107
NCBI chr 7:98,645,238...98,677,253
Ensembl chr 7:98,645,182...98,677,248
G
Cd276
Cd276 molecule
acts_upstream_of_or_within
ISO
MGI:3033707 (PMID:15317945)
RGD
PMID:15317945
NCBI chr 8:58,937,751...58,968,082
Ensembl chr 8:58,937,751...58,968,380
G
Cebpa
CCAAT/enhancer binding protein alpha
acts_upstream_of_or_within
ISO
(PMID:15175325)
RGD
PMID:15175325
NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412
G
Cebpb
CCAAT/enhancer binding protein beta
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:15175325)
Ensembl RGD
PMID:15175325
GO_REF:0000107
NCBI chr 3:156,398,035...156,399,466
Ensembl chr 3:156,397,052...156,399,473
G
Cebpd
CCAAT/enhancer binding protein delta
acts_upstream_of_or_within
ISO
(PMID:15175325)
RGD
PMID:15175325
NCBI chr11:84,764,670...84,765,808
Ensembl chr11:84,764,565...84,765,829
G
Clic1
chloride intracellular channel 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:19703605)
Ensembl RGD
PMID:19703605
GO_REF:0000107
NCBI chr20:3,764,867...3,773,711
Ensembl chr20:3,761,461...3,773,712
G
Cthrc1
collagen triple helix repeat containing 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3830252 (PMID:18779865)
Ensembl RGD
PMID:18779865
GO_REF:0000107
NCBI chr 7:70,122,474...70,132,756
Ensembl chr 7:70,122,474...70,132,756
G
Ctnnb1
catenin beta 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2148591|MGI:2148594|MGI:2450929 (PMID:15866163)
Ensembl RGD
PMID:15866163
GO_REF:0000107
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
G
Ctnnbip1
catenin, beta-interacting protein 1
involved_in
ISO
(PMID:18977368)
RGD
PMID:18977368
NCBI chr 5:159,961,961...160,010,942
Ensembl chr 5:159,961,928...160,010,939
G
Ddr2
discoidin domain receptor tyrosine kinase 2
involved_in
ISO
(PMID:20564243)
RGD
PMID:20564243
NCBI chr13:82,193,623...82,318,229
Ensembl chr13:82,195,463...82,317,363
G
Dlx5
distal-less homeobox 5
IMP
RGD
PMID:12815054
RGD:1298882
NCBI chr 4:34,999,139...35,003,504
Ensembl chr 4:34,999,139...35,003,407
G
Dnai3
dynein axonemal intermediate chain 3
involved_in
ISO
(PMID:25498833)
RGD
PMID:25498833
NCBI chr 2:234,947,910...235,006,173
Ensembl chr 2:234,929,677...235,006,173
G
Fam20c
FAM20C, golgi associated secretory pathway kinase
acts_upstream_of_or_within
ISO
(PMID:22615579)
RGD
PMID:22615579
NCBI chr12:15,826,864...15,885,423
Ensembl chr12:15,826,871...15,884,543
G
Fbn2
fibrillin 2
involved_in
ISO
(PMID:20855508)
RGD
PMID:20855508
NCBI chr18:51,499,670...51,703,976
Ensembl chr18:51,499,737...51,703,976
G
Fbxo5
F-box protein 5
involved_in
ISO
(PMID:29850565)
RGD
PMID:29850565
NCBI chr 1:42,196,068...42,202,437
Ensembl chr 1:42,196,068...42,202,437
G
Fermt2
FERM domain containing kindlin 2
involved_in
ISO
(PMID:29496737)
RGD
PMID:29496737
NCBI chr15:18,682,927...18,751,959
Ensembl chr15:18,682,927...18,751,811
G
Ffar4
free fatty acid receptor 4
involved_in
ISS ISO
GO_REF:0000024 (PMID:26365922)
UniProt RGD
PMID:26365922
GO_REF:0000024
NCBI chr 1:235,873,576...235,891,597
Ensembl chr 1:235,873,576...235,891,597
G
Fgf2
fibroblast growth factor 2
acts_upstream_of_or_within
ISO
MGI:95729 (PMID:20570969)
RGD
PMID:20570969
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
G
Fzd1
frizzled class receptor 1
involved_in
ISO
(PMID:20039315)
RGD
PMID:20039315
NCBI chr 4:29,310,303...29,314,701
Ensembl chr 4:29,310,091...29,312,643 Ensembl chr 4:29,310,091...29,312,643
G
Gdf10
growth differentiation factor 10
involved_in
IDA IBA
GO_REF:0000033
GO_Central RGD
PMID:12559390
GO_REF:0000033, RGD:2316372
NCBI chr16:9,237,182...9,250,537
Ensembl chr16:9,237,261...9,249,343
G
Gdpd2
glycerophosphodiester phosphodiesterase domain containing 2
acts_upstream_of_or_within
ISO
(PMID:12933806)
RGD
PMID:12933806
NCBI chr X:65,826,273...65,835,361
Ensembl chr X:65,826,574...65,835,361
G
Gli3
GLI family zinc finger 3
acts_upstream_of_or_within
ISO
MGI:1856276|MGI:95516 (PMID:20570969)
RGD
PMID:20570969
NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
G
Gnas
GNAS complex locus
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3043361 (PMID:15797856)
Ensembl RGD
PMID:15797856
GO_REF:0000107
NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262 Ensembl chr 3:163,071,417...163,127,262
G
Hey1
hes-related family bHLH transcription factor with YRPW motif 1
acts_upstream_of_or_within
ISO
MGI:1321394|MGI:99829 (PMID:18986983)
RGD
PMID:18986983
NCBI chr 2:93,096,605...93,100,316
Ensembl chr 2:93,095,498...93,100,312
G
Ifitm1
interferon induced transmembrane protein 1
involved_in
ISO
(PMID:22634173)
RGD
PMID:22634173
NCBI chr 1:196,067,163...196,069,169
Ensembl chr 1:196,067,963...196,069,169
G
Igf1
insulin-like growth factor 1
involved_in
IDA IEA ISO
GO_REF:0000107 (PMID:16433617)
Ensembl RGD
PMID:16433617 PMID:16897348
GO_REF:0000107, RGD:1598452
NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
G
Il6st
interleukin 6 cytokine family signal transducer
involved_in
ISO IEA
(PMID:12372336) GO_REF:0000107
RGD Ensembl
PMID:12372336
GO_REF:0000107
NCBI chr 2:44,065,979...44,106,255
Ensembl chr 2:44,066,130...44,109,936
G
Ilk
integrin-linked kinase
involved_in
IEA ISO
GO_REF:0000107 (PMID:20675382)
Ensembl RGD
PMID:20675382
GO_REF:0000107
NCBI chr 1:160,088,839...160,095,140
Ensembl chr 1:160,088,897...160,095,140
G
Jag1
jagged canonical Notch ligand 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:23980096)
Ensembl RGD
PMID:23980096
GO_REF:0000107
NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209
G
Jund
JunD proto-oncogene, AP-1 transcription factor subunit
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1316736 (PMID:15563473)
Ensembl RGD
PMID:15563473
GO_REF:0000107
NCBI chr16:18,734,121...18,735,799
Ensembl chr16:18,734,122...18,735,799
G
Lmna
lamin A/C
IMP
RGD
PMID:22119912
RGD:10003161
NCBI chr 2:173,939,751...173,960,423
Ensembl chr 2:173,939,751...173,960,423
G
Lrp3
LDL receptor related protein 3
involved_in
ISO IEA
(PMID:28340487) GO_REF:0000107
RGD Ensembl
PMID:28340487
GO_REF:0000107
NCBI chr 1:87,843,815...87,859,147
Ensembl chr 1:87,844,868...87,859,110
G
Lrp5
LDL receptor related protein 5
involved_in
ISO
(PMID:26891291)
RGD
PMID:26891291
NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
G
Ltf
lactotransferrin
involved_in
ISO
(PMID:15166119)
RGD
PMID:15166119
NCBI chr 8:110,999,948...111,022,795
Ensembl chr 8:110,999,948...111,022,795
G
Mef2c
myocyte enhancer factor 2C
involved_in
ISS ISO
GO_REF:0000024 (PMID:21652706)
UniProt RGD
PMID:21652706
GO_REF:0000024
NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
G
Men1
menin 1
acts_upstream_of_or_within
ISO
MGI:88177 (PMID:15150273)
RGD
PMID:15150273
NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
G
Mir200c
microRNA 200c
involved_in
ISO
(PMID:27529418)
RGD
PMID:27529418
NCBI chr 4:157,523,679...157,523,747
G
Mir20a
microRNA 20a
acts_upstream_of
ISO
(PMID:21743293)
RGD
PMID:21743293
NCBI chr15:92,181,084...92,181,168
Ensembl chr15:92,181,084...92,181,168
G
Mir20b
microRNA 20b
acts_upstream_of
ISO
(PMID:21042576)
RGD
PMID:21042576
NCBI chr X:132,422,211...132,422,282
Ensembl chr X:132,422,211...132,422,282
G
Mir21
microRNA 21
involved_in
ISO
(PMID:23239100)
RGD
PMID:23239100
NCBI chr10:71,902,600...71,902,691
Ensembl chr10:71,405,257...71,405,348
G
Mir210
microRNA 210
involved_in acts_upstream_of_or_within
ISO
(PMID:26780211) (PMID:19520079)
RGD
PMID:19520079 PMID:26780211
NCBI chr 1:196,326,343...196,326,452
Ensembl chr 1:196,326,337...196,326,454
G
Mnda
myeloid cell nuclear differentiation antigen
acts_upstream_of_or_within
ISO
MGI:88177 (PMID:15557274)
RGD
PMID:15557274
NCBI chr13:86,017,888...86,035,556
Ensembl chr13:86,017,892...86,034,201
G
Msx2
msh homeobox 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:15175325)
Ensembl RGD
PMID:15175325
GO_REF:0000107
NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
G
Nell1
neural EGFL like 1
involved_in
ISO ISS
(PMID:21723284) GO_REF:0000024
RGD UniProt
PMID:21723284
GO_REF:0000024
NCBI chr 1:99,709,305...100,573,872
Ensembl chr 1:99,709,793...100,573,860
G
Npnt
nephronectin
involved_in
ISO
(PMID:19944102), (PMID:21689636)
RGD
PMID:19944102 PMID:21689636
NCBI chr 2:221,391,151...221,459,527
Ensembl chr 2:221,391,153...221,459,401
G
Nppc
natriuretic peptide C
IDA
RGD
PMID:17562543
RGD:1642298
NCBI chr 9:87,320,051...87,324,251
Ensembl chr 9:87,320,051...87,324,251
G
Pdlim7
PDZ and LIM domain 7
IDA
RGD
PMID:9832452
RGD:632731
NCBI chr17:9,124,565...9,139,814
Ensembl chr17:9,124,649...9,139,811
G
Ppp3ca
protein phosphatase 3 catalytic subunit alpha
involved_in
ISS ISO
GO_REF:0000024 (PMID:16286645)
UniProt RGD
PMID:16286645
GO_REF:0000024
NCBI chr 2:225,165,981...225,440,978
Ensembl chr 2:225,165,766...225,438,974
G
Prkd1
protein kinase D1
involved_in
ISS ISO
GO_REF:0000024 (PMID:19029091)
UniProt RGD
PMID:19029091
GO_REF:0000024
NCBI chr 6:67,725,193...68,039,002
Ensembl chr 6:67,725,905...68,039,042
G
Prmt3
protein arginine methyltransferase 3
involved_in
ISO
(PMID:31378783)
RGD
PMID:31378783
NCBI chr 1:99,492,712...99,581,774
Ensembl chr 1:99,492,724...99,579,435
G
Ptger4
prostaglandin E receptor 4
IMP
RGD
PMID:14751573
RGD:10043372
NCBI chr 2:54,330,563...54,347,451
Ensembl chr 2:54,335,424...54,346,670
G
Runx2
RUNX family transcription factor 2
involved_in acts_upstream_of_or_within
IEA ISO ISS
GO_REF:0000107 MGI:1316736|MGI:1341800 (PMID:15150273), (PMID:15175325), (PMID:18986983) (PMID:28703881) GO_REF:0000024
Ensembl RGD UniProt
PMID:15150273 PMID:15175325 PMID:18986983 PMID:28703881
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
G
Scube2
signal peptide, CUB domain and EGF like domain containing 2
acts_upstream_of_or_within
ISO
MGI:5698367|MGI:96533 (PMID:25639508)
RGD
PMID:25639508
NCBI chr 1:163,831,876...163,899,925
Ensembl chr 1:163,832,015...163,899,393
G
Scube3
signal peptide, CUB domain and EGF like domain containing 3
involved_in
ISO
(PMID:33308444)
RGD
PMID:33308444
NCBI chr20:6,199,182...6,231,100
Ensembl chr20:6,199,182...6,228,584
G
Sfrp2
secreted frizzled-related protein 2
acts_upstream_of_or_within
ISO
MGI:98956 (PMID:18166153)
RGD
PMID:18166153
NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063
G
Smad1
SMAD family member 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1316736 (PMID:15150273)
Ensembl RGD
PMID:15150273
GO_REF:0000107
NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
G
Smad5
SMAD family member 5
involved_in acts_upstream_of_or_within
ISO
(PMID:32271402) MGI:1316736 (PMID:15150273)
RGD
PMID:15150273 PMID:32271402
NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634
G
Sox11
SRY-box transcription factor 11
involved_in
ISS ISO
GO_REF:0000024 (PMID:20626275)
UniProt RGD
PMID:20626275
GO_REF:0000024
NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
G
Suco
SUN domain containing ossification factor
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:20440000) GO_REF:0000024
Ensembl RGD UniProt
PMID:20440000
GO_REF:0000024 GO_REF:0000107
NCBI chr13:74,192,808...74,257,896
Ensembl chr13:74,193,573...74,257,896
G
Tent5a
terminal nucleotidyltransferase 5A
involved_in
ISO
(PMID:33882302)
RGD
PMID:33882302
NCBI chr 8:86,222,294...86,229,045
Ensembl chr 8:86,225,357...86,229,045
G
Tmem119
transmembrane protein 119
involved_in
ISO IBA
(PMID:20025746) (PMID:20025746), (PMID:22416756), (PMID:22579779) GO_REF:0000033
RGD GO_Central
PMID:20025746 PMID:22416756 PMID:22579779
GO_REF:0000033
NCBI chr12:42,828,621...42,835,678
Ensembl chr12:42,828,418...42,835,689
G
Tp63
tumor protein p63
involved_in
ISO
(PMID:22521434)
RGD
PMID:22521434
NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398
G
Vegfa
vascular endothelial growth factor A
acts_upstream_of_or_within
ISO
MGI:1931048 (PMID:22886301)
RGD
PMID:22886301
NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
G
Wnt10b
Wnt family member 10B
acts_upstream_of_or_within
ISO
(PMID:15728361), (PMID:19723499)
RGD
PMID:15728361 PMID:19723499
NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892
G
Wnt3
Wnt family member 3
involved_in
ISO
(PMID:20039315)
RGD
PMID:20039315
NCBI chr10:88,680,198...88,724,170
Ensembl chr10:88,680,248...88,724,099
G
Wnt4
Wnt family member 4
involved_in
ISO IEA
(PMID:17720811) GO_REF:0000107
RGD Ensembl
PMID:17720811
GO_REF:0000107
NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859
G
Wnt7b
Wnt family member 7B
acts_upstream_of_or_within
ISO
(PMID:15576404)
RGD
PMID:15576404
NCBI chr 7:116,634,817...116,679,459
Ensembl chr 7:116,634,814...116,679,581
G
Wwtr1
WW domain containing transcription regulator 1
involved_in
ISO
UniProtKB:Q96AC1 (PMID:29496737)
RGD
PMID:29496737
NCBI chr 2:141,651,159...141,766,919
Ensembl chr 2:141,648,108...141,766,968
G
Yap1
Yes1 associated transcriptional regulator
involved_in
ISO IEA
(PMID:29496737) GO_REF:0000107
RGD Ensembl
PMID:29496737
GO_REF:0000107
NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
G
Zhx3
zinc fingers and homeoboxes 3
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:21174497)
UniProt Ensembl RGD
PMID:21174497
GO_REF:0000024 GO_REF:0000107
NCBI chr 3:149,417,787...149,548,671
Ensembl chr 3:149,417,818...149,527,079
G
Apc
APC regulator of WNT signaling pathway
acts_upstream_of_or_within
ISO
MGI:1857966 (PMID:15802266)
RGD
PMID:15802266
NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696
G
Atf4
activating transcription factor 4
involved_in
ISS ISO
GO_REF:0000024 (PMID:15109498)
UniProt RGD
PMID:15109498
GO_REF:0000024
NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446
G
Ctnnb1
catenin beta 1
acts_upstream_of_or_within
ISO
MGI:2148567|MGI:3044412 (PMID:15576404), (PMID:15802266)
RGD
PMID:15576404 PMID:15802266
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
G
Ddx5
DEAD-box helicase 5
involved_in
ISO
(PMID:17960593)
RGD
PMID:17960593
NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283
G
Esrra
estrogen related receptor, alpha
IMP
RGD
PMID:11381083
RGD:1625633
NCBI chr 1:204,104,100...204,114,182
Ensembl chr 1:204,104,101...204,114,268
G
Fzd1
frizzled class receptor 1
IEP
RGD
PMID:1334084
RGD:61590
NCBI chr 4:29,310,303...29,314,701
Ensembl chr 4:29,310,091...29,312,643 Ensembl chr 4:29,310,091...29,312,643
G
Gli1
GLI family zinc finger 1
involved_in
ISO
(PMID:22493482)
RGD
PMID:22493482
NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251
G
Gsk3b
glycogen synthase kinase 3 beta
IMP
RGD
PMID:28731198
RGD:13792731
NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
G
Hemgn
hemogen
involved_in
IDA IBA
GO_REF:0000033
GO_Central RGD
PMID:11161722
GO_REF:0000033, RGD:632552
NCBI chr 5:60,679,633...60,698,597
Ensembl chr 5:60,679,633...60,698,669
G
Mir188
microRNA 188
acts_upstream_of_or_within
ISO
(PMID:25751060)
RGD
PMID:25751060
NCBI chr X:15,247,715...15,247,794
Ensembl chr X:15,247,715...15,247,794
G
Nell1
neural EGFL like 1
involved_in
IMP IBA
GO_REF:0000033
GO_Central RGD
PMID:12235118
GO_REF:0000033, RGD:633405
NCBI chr 1:99,709,305...100,573,872
Ensembl chr 1:99,709,793...100,573,860
G
Prkaca
protein kinase cAMP-activated catalytic subunit alpha
involved_in
ISO IEA
(PMID:19949837) GO_REF:0000107
RGD Ensembl
PMID:19949837
GO_REF:0000107
NCBI chr19:24,155,081...24,178,430
Ensembl chr19:24,155,090...24,178,430
G
Ptk2
protein tyrosine kinase 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:16927379)
UniProt RGD
PMID:16927379
GO_REF:0000024
NCBI chr 7:105,126,725...105,331,848
Ensembl chr 7:105,126,728...105,331,783
G
Rassf2
Ras association domain family member 2
acts_upstream_of_or_within
ISO
MGI:5314787 (PMID:22227519)
RGD
PMID:22227519
NCBI chr 3:119,244,288...119,280,462
Ensembl chr 3:119,245,821...119,280,431
G
Rest
RE1-silencing transcription factor
involved_in
ISS ISO
GO_REF:0000024 (PMID:25838543)
UniProt RGD
PMID:25838543
GO_REF:0000024
NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
G
Runx2
RUNX family transcription factor 2
acts_upstream_of_or_within
TAS ISO
(PMID:21628588)
RGD
PMID:21628588 PMID:9651525
RGD:69800
NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
G
Smoc1
SPARC related modular calcium binding 1
involved_in
ISO
(PMID:20359165)
RGD
PMID:20359165
NCBI chr 6:100,701,330...100,897,441
Ensembl chr 6:100,701,346...100,862,699
G
Snai2
snail family transcriptional repressor 2
involved_in
ISO
(PMID:19756381), (PMID:21182836)
RGD
PMID:19756381 PMID:21182836
NCBI chr11:86,182,788...86,186,203
Ensembl chr11:86,181,909...86,186,200
G
Tcirg1
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3
acts_upstream_of_or_within
ISO
MGI:1856973 (PMID:22351931)
RGD
PMID:22351931
NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
G
Ucma
upper zone of growth plate and cartilage matrix associated
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr17:73,293,977...73,303,709
Ensembl chr17:73,293,978...73,303,611
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all