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ONTOLOGY REPORT - ANNOTATIONS


Term:outer dense fiber
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Accession:GO:0001520 term browser browse the term
Definition:A supramolecular fiber found in the flagella of mammalian sperm that surrounds the nine microtubule doublets. These dense fibers are stiff and noncontractile. In human, they consist of about 10 major and at least 15 minor proteins, where all major proteins are ODF1, ODF2 or ODF2-related proteins.
Synonyms:exact_synonym: outer dense fibre
 only_in_taxon: NCBITaxon:40674 ! Mammalia



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outer dense fiber term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak1 adenylate kinase 1 located_in IEA
ISO
GO_REF:0000107
(PMID:16790685)
Ensembl
RGD
PMID:16790685 GO_REF:0000107 NCBI chr 3:15,912,431...15,923,045
Ensembl chr 3:15,912,485...15,923,041
JBrowse link
G Cimap1a ciliary microtubule associated protein 1A is_active_in
located_in
IBA
ISO
GO_REF:0000033
(PMID:12079992)
GO_Central
RGD
PMID:12079992 GO_REF:0000033 NCBI chr 1:205,355,601...205,358,882
Ensembl chr 1:195,926,041...195,929,248
JBrowse link
G Ctsh cathepsin H IDA RGD PMID:12838426 RGD:5686399 NCBI chr 8:99,488,756...99,507,639
Ensembl chr 8:90,608,941...90,627,824
JBrowse link
G Ddx6 DEAD-box helicase 6 IDA RGD PMID:24141902 RGD:10755411 NCBI chr 8:44,931,127...44,967,773
Ensembl chr 8:44,931,974...44,964,405
Ensembl chr 8:44,931,974...44,964,405
JBrowse link
G Flacc1 flagellum associated containing coiled-coil domains 1 located_in ISS
ISO
GO_REF:0000024
(PMID:21402173)
UniProt
RGD
PMID:21402173 GO_REF:0000024 NCBI chr 9:60,315,581...60,343,692
Ensembl chr 9:60,315,582...60,343,648
JBrowse link
G Marcks myristoylated alanine rich protein kinase C substrate IDA RGD PMID:21764106 RGD:9685331 NCBI chr20:42,240,185...42,245,882
Ensembl chr20:40,685,315...40,691,012
JBrowse link
G Odf1 outer dense fiber of sperm tails 1 is_active_in
located_in
IBA
ISO
GO_REF:0000033
(PMID:12079992)
PR:Q8K273 (PMID:37371084)
GO_Central
RGD
PMID:12079992 PMID:37371084 GO_REF:0000033 NCBI chr 7:69,377,427...69,389,662
Ensembl chr 7:69,380,116...69,389,664
JBrowse link
G Odf2 outer dense fiber of sperm tails 2 IDA RGD PMID:9698445 RGD:69913 NCBI chr 3:13,160,981...13,207,223
Ensembl chr 3:13,161,494...13,206,985
JBrowse link
G Odf4 outer dense fiber of sperm tails 4 located_in IEA
ISO
GO_REF:0000107
(PMID:12079992)
Ensembl
RGD
PMID:12079992 GO_REF:0000107 NCBI chr10:53,628,592...53,634,525
Ensembl chr10:53,628,759...53,634,359
JBrowse link
G Pmfbp1 polyamine modulated factor 1 binding protein 1 TAS RGD PMID:11774381 RGD:724397 NCBI chr19:37,458,126...37,507,880
Ensembl chr19:37,458,108...37,507,879
JBrowse link
G Rsph1 radial spoke head component 1 located_in ISO (PMID:18453535) RGD PMID:18453535 NCBI chr20:9,341,910...9,360,640
Ensembl chr20:9,341,913...9,360,640
JBrowse link
G Tmem232 transmembrane protein 232 is_active_in ISO
IBA
PR:Q61999 (PMID:37371084)
GO_REF:0000033
RGD
GO_Central
PMID:37371084 GO_REF:0000033 NCBI chr 9:112,334,569...112,562,627
Ensembl chr 9:104,887,669...105,143,027
JBrowse link
G Txndc2 thioredoxin domain containing 2 IDA RGD PMID:12149401 RGD:1549680 NCBI chr 9:112,677,459...112,682,027
Ensembl chr 9:105,230,578...105,235,126
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21322
    cellular anatomical structure 21027
      supramolecular complex 1407
        supramolecular polymer 1043
          supramolecular fiber 1036
            polymeric cytoskeletal fiber 775
              outer dense fiber 13
Path 2
Term Annotations click to browse term
  cellular_component 21322
    cellular anatomical structure 21027
      organelle 14240
        membrane-bounded organelle 12805
          cilium 995
            motile cilium 336
              9+2 motile cilium 268
                sperm flagellum 251
                  outer dense fiber 13
paths to the root