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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA polymerase II complex binding
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Accession:GO:0000993 term browser browse the term
Definition:Binding to an RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits.
Synonyms:exact_synonym: RNA polymerase II core binding;   RNAP II core binding


show annotations for term's descendants           Sort by:
RNA polymerase II complex binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 enables ISO
IEA 		(PMID:25336585)
GO_REF:0000107 		RGD
Ensembl		 PMID:25336585 GO_REF:0000107 NCBI chr 5:144,006,618...144,064,740
Ensembl chr 5:144,006,618...144,041,624 		JBrowse link
G Ago2 argonaute RISC catalytic component 2 enables IEA
ISO 		GO_REF:0000107
(PMID:25336585) 		Ensembl
RGD		 PMID:25336585 GO_REF:0000107 NCBI chr 7:106,907,209...106,994,124
Ensembl chr 7:106,918,125...106,993,980 		JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 enables ISO
IEA 		(PMID:22446626)
GO_REF:0000107 		RGD
Ensembl		 PMID:22446626 GO_REF:0000107 NCBI chr15:51,622,519...51,637,911
Ensembl chr15:51,622,464...51,637,774 		JBrowse link
G Cdc73 cell division cycle 73 enables ISS
IBA
ISO 		GO_REF:0000024
GO_REF:0000033
(PMID:15923622) 		UniProt
GO_Central
RGD		 PMID:15923622 GO_REF:0000024 GO_REF:0000033 NCBI chr13:57,897,924...58,000,031
Ensembl chr13:57,883,983...57,999,978 		JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:174,571,952...174,601,974
Ensembl chr 1:174,571,928...174,602,130 		JBrowse link
G Dhx9 DExH-box helicase 9 enables ISO
IEA 		(PMID:11416126)
GO_REF:0000107 		RGD
Ensembl		 PMID:11416126 GO_REF:0000107 NCBI chr13:68,152,813...68,189,580
Ensembl chr13:68,152,813...68,189,546 		JBrowse link
G Elof1 elongation factor 1 enables IEA
IBA
ISO 		GO_REF:0000107
GO_REF:0000033
(PMID:34108662), (PMID:34108663) 		Ensembl
GO_Central
RGD		 PMID:34108662 PMID:34108663 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:28,921,338...28,926,612
Ensembl chr 8:28,921,339...28,926,228 		JBrowse link
G Elp2 elongator acetyltransferase complex subunit 2 contributes_to ISO
IEA 		(PMID:11714725)
GO_REF:0000107 		RGD
Ensembl		 PMID:11714725 GO_REF:0000107 NCBI chr18:16,160,686...16,196,307
Ensembl chr18:16,160,671...16,196,414 		JBrowse link
G ENSRNOG00000068353 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Ercc5 ERCC excision repair 5, endonuclease enables ISO (PMID:16246722) RGD PMID:16246722 NCBI chr 9:53,801,471...53,846,611
Ensembl chr 9:53,801,714...53,875,084 		JBrowse link
G Esrrb estrogen-related receptor beta enables ISS
ISO 		GO_REF:0000024
(PMID:23019124) 		UniProt
RGD		 PMID:23019124 GO_REF:0000024 NCBI chr 6:111,738,662...111,894,087
Ensembl chr 6:111,738,662...111,894,087 		JBrowse link
G Gpn1 GPN-loop GTPase 1 enables ISO (PMID:20855544), (PMID:20864038), (PMID:21768307), (PMID:21844196) RGD PMID:20855544 PMID:20864038 PMID:21768307 PMID:21844196 NCBI chr 6:30,667,337...30,685,011
Ensembl chr 6:30,666,868...30,685,011 		JBrowse link
G Gtf2b general transcription factor IIB enables ISO
ISS
IEA 		(PMID:8413225), (PMID:8504927)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:8413225 PMID:8504927 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:234,427,734...234,446,043
Ensembl chr 2:234,427,637...234,446,049 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO
IEA 		(PMID:10490622)
GO_REF:0000107 		RGD
Ensembl		 PMID:10490622 GO_REF:0000107 NCBI chr13:92,609,791...92,618,580
Ensembl chr13:92,605,216...92,618,612 		JBrowse link
G Ncoa3 nuclear receptor coactivator 3 enables ISS
ISO 		GO_REF:0000024
(PMID:23019124) 		UniProt
RGD		 PMID:23019124 GO_REF:0000024 NCBI chr 3:175,157,824...175,237,831
Ensembl chr 3:175,157,821...175,240,631 		JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component enables ISO
IEA
IBA
ISS 		(PMID:15923622)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:15923622 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:92,811,197...92,816,775
Ensembl chr 1:92,798,237...92,816,779 		JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit enables ISO
IEA
IBA 		(PMID:29196535)
GO_REF:0000002
GO_REF:0000033 		RGD
InterPro
GO_Central		 PMID:29196535 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:156,109,724...156,136,950
Ensembl chr 1:156,109,724...156,136,435 		JBrowse link
G Polr2m RNA polymerase II subunit M enables ISO (PMID:26789250) RGD PMID:26789250 NCBI chr 8:81,012,770...81,020,201
Ensembl chr 8:81,012,771...81,020,302 		JBrowse link
G Recql5 RecQ like helicase 5 enables ISS
ISO 		GO_REF:0000024
(PMID:23748380) 		UniProt
RGD		 PMID:23748380 GO_REF:0000024 NCBI chr10:101,625,477...101,664,582
Ensembl chr10:101,625,480...101,664,663 		JBrowse link
G Rprd1a regulation of nuclear pre-mRNA domain containing 1A enables IBA
IEA 		GO_REF:0000033
GO_REF:0000104 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104 NCBI chr18:16,066,169...16,114,102
Ensembl chr18:16,066,169...16,114,282 		JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B enables ISO
IEA
IBA 		(PMID:22264791)
GO_REF:0000107
GO_REF:0000104
GO_REF:0000033 		RGD
Ensembl
UniProt
GO_Central		 PMID:22264791 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr 3:167,102,909...167,149,184
Ensembl chr 3:167,102,859...167,206,374 		JBrowse link
G Rprd2 regulation of nuclear pre-mRNA domain containing 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:186,000,375...186,056,943
Ensembl chr 2:186,000,316...186,056,943 		JBrowse link
G Rtraf RNA transcription, translation and transport factor enables ISO (PMID:16950395) RGD PMID:16950395 NCBI chr15:4,482,699...4,507,115
Ensembl chr15:4,480,966...4,507,115 		JBrowse link
G Scaf8 SR-related CTD-associated factor 8 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:46,132,972...46,321,162
Ensembl chr 1:46,132,873...46,261,174 		JBrowse link
G Smyd2 SET and MYND domain containing 2 enables ISS
ISO
IEA 		GO_REF:0000024
(PMID:20305823)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:20305823 GO_REF:0000024 GO_REF:0000107 NCBI chr13:103,956,470...103,997,774
Ensembl chr13:103,956,473...103,997,774 		JBrowse link
G Smyd3 SET and MYND domain containing 3 enables IEA
ISO 		GO_REF:0000107
(PMID:23752591) 		Ensembl
RGD		 PMID:23752591 GO_REF:0000107 NCBI chr13:93,241,274...93,798,221
Ensembl chr13:93,241,279...93,798,237 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:73,036,560...73,042,821
Ensembl chr10:73,036,343...73,043,088 		JBrowse link
G Uri1 URI1, prefoldin-like chaperone enables ISO (PMID:9819440) RGD PMID:9819440 NCBI chr 1:99,783,157...99,845,787
Ensembl chr 1:99,783,158...99,853,906 		JBrowse link
G Uvssa UV-stimulated scaffold protein A enables ISO
IBA
ISS 		(PMID:22466610), (PMID:22466611), (PMID:22466612)
GO_REF:0000033
GO_REF:0000024 		RGD
GO_Central
UniProt		 PMID:22466610 PMID:22466611 PMID:22466612 GO_REF:0000024 GO_REF:0000033 NCBI chr14:81,535,179...81,576,444
Ensembl chr14:81,539,607...81,576,427 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil enables ISO
IBA 		(PMID:21329877)
GO_REF:0000033 		RGD
GO_Central		 PMID:21329877 GO_REF:0000033 NCBI chr17:60,617,702...60,677,771
Ensembl chr17:60,617,544...60,679,267 		JBrowse link
G Wdr43 WD repeat domain 43 enables IEA
ISO 		GO_REF:0000107
(PMID:31128943) 		Ensembl
RGD		 PMID:31128943 GO_REF:0000107 NCBI chr 6:29,565,610...29,604,954
Ensembl chr 6:29,565,610...29,604,954 		JBrowse link
G Zfp326 zinc finger protein 326 enables ISO (PMID:22446626) RGD PMID:22446626 NCBI chr14:4,246,081...4,286,805
Ensembl chr14:4,245,878...4,331,064 		JBrowse link
RNA polymerase II C-terminal domain binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd4 bromodomain containing 4 enables ISO (PMID:22509028)
PR:P08775 (PMID:22509028) 		RGD PMID:22509028 NCBI chr 7:11,866,997...11,946,575
Ensembl chr 7:11,866,997...11,946,923 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISS
ISO 		GO_REF:0000024
(PMID:21235343) 		UniProt
RGD		 PMID:21235343 GO_REF:0000024 NCBI chr13:92,609,791...92,618,580
Ensembl chr13:92,605,216...92,618,612 		JBrowse link
G Pcif1 phosphorylated CTD interacting factor 1 enables ISO
IEA 		(PMID:18294453), (PMID:30467178)
GO_REF:0000002 		RGD
InterPro		 PMID:18294453 PMID:30467178 GO_REF:0000002 NCBI chr 3:174,033,471...174,046,403
Ensembl chr 3:174,034,675...174,049,395 		JBrowse link
G Rprd1a regulation of nuclear pre-mRNA domain containing 1A enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:16,066,169...16,114,102
Ensembl chr18:16,066,169...16,114,282 		JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:167,102,909...167,149,184
Ensembl chr 3:167,102,859...167,206,374 		JBrowse link
G Rprd2 regulation of nuclear pre-mRNA domain containing 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:186,000,375...186,056,943
Ensembl chr 2:186,000,316...186,056,943 		JBrowse link
G Scaf1 SR-related CTD-associated factor 1 enables ISO
IEA
IBA 		UniProtKB:P24928 (PMID:15992770)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:15992770 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:104,621,927...104,635,161
Ensembl chr 1:104,621,927...104,635,032 		JBrowse link
RNA polymerase II C-terminal domain phosphoserine binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:85,080,036...85,104,471
Ensembl chr 8:85,079,996...85,105,094 		JBrowse link
G Pcif1 phosphorylated CTD interacting factor 1 enables ISO (PMID:32814042) RGD PMID:32814042 NCBI chr 3:174,033,471...174,046,403
Ensembl chr 3:174,034,675...174,049,395 		JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:127,113,171...127,172,761
Ensembl chr 3:127,113,163...127,172,761 		JBrowse link
G Scaf4 SR-related CTD-associated factor 4 enables ISO
ISS
IEA
IBA 		(PMID:31104839)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033 		RGD
UniProt
Ensembl
GO_Central		 PMID:31104839 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:42,951,254...43,007,293
Ensembl chr11:42,951,254...43,007,293 		JBrowse link
G Scaf8 SR-related CTD-associated factor 8 enables ISO
ISS
IEA 		(PMID:31104839)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:31104839 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:46,132,972...46,321,162
Ensembl chr 1:46,132,873...46,261,174 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19971
    binding 17406
      protein binding 14813
        basal transcription machinery binding 65
          basal RNA polymerase II transcription machinery binding 65
            RNA polymerase II complex binding 38
              RNA polymerase II C-terminal domain binding + 11
              RNA polymerase II complex recruiting activity 0
Path 2
Term Annotations click to browse term
  molecular_function 19971
    binding 17406
      protein binding 14813
        enzyme binding 2326
          RNA polymerase binding 62
            RNA polymerase core enzyme binding 42
              RNA polymerase II complex binding 38
                RNA polymerase II C-terminal domain binding + 11
                RNA polymerase II complex recruiting activity 0
paths to the root