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ONTOLOGY REPORT - ANNOTATIONS

Term:X chromosome
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Accession:GO:0000805 term browser browse the term
Definition:The sex chromosome present in both sexes of species in which the male is the heterogametic sex. Two copies of the X chromosome are present in each somatic cell of females and one copy is present in males.
Synonyms:xref: Wikipedia:X_chromosome
 never_in_taxon: NCBITaxon:8782 ! Aves


show annotations for term's descendants           Sort by:
X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 located_in ISO
IEA		 (PMID:17784788)
GO_REF:0000107		 RGD
Ensembl		 PMID:17784788 GO_REF:0000107 NCBI chr 7:1,714,392...1,721,964
Ensembl chr 7:1,129,811...1,137,403 		JBrowse link
G Pcgf3 polycomb group ring finger 3 located_in ISO (PMID:28596365) RGD PMID:28596365 NCBI chr14:1,381,976...1,436,709
Ensembl chr14:1,233,947...1,291,793 		JBrowse link
G Pcgf5 polycomb group ring finger 5 located_in ISO
IEA		 (PMID:28596365)
GO_REF:0000107		 RGD
Ensembl		 PMID:28596365 GO_REF:0000107 NCBI chr 1:243,476,450...243,592,603
Ensembl chr 1:234,063,892...234,175,315 		JBrowse link
G Sin3b SIN3 transcription regulator family member B located_in ISO (PMID:16787967) RGD PMID:16787967 NCBI chr16:17,157,352...17,194,051
Ensembl chr16:17,123,434...17,159,978 		JBrowse link
G Xist X inactive specific transcript located_in ISO (PMID:24613346) RGD PMID:24613346 NCBI chr  X:72,540,753...72,558,266 JBrowse link
Barr body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2az1 H2A.Z variant histone 1 NOT|located_in ISO (PMID:11331621) RGD PMID:11331621 NCBI chr 2:229,026,464...229,031,411
Ensembl chr 2:226,355,708...226,358,485 		JBrowse link
G H3f3a H3.3 histone A located_in ISO (PMID:15657431) RGD PMID:15657431 NCBI chr13:95,065,085...95,076,695
Ensembl chr13:92,533,298...92,544,908 		JBrowse link
G Lrif1 ligand dependent nuclear receptor interacting factor 1 located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:23542155)
(PMID:26391951)		 UniProt
Ensembl
RGD		 PMID:23542155 PMID:26391951 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:196,919,606...197,010,713
Ensembl chr 2:194,230,951...194,322,483 		JBrowse link
G Macroh2a1 macroH2A.1 histone located_in ISO
IEA		 (PMID:11331621), (PMID:18936163)
GO_REF:0000107		 RGD
Ensembl		 PMID:11331621 PMID:18936163 GO_REF:0000107 NCBI chr17:8,484,340...8,547,268
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Macroh2a2 macroH2A.2 histone located_in ISO
IEA		 (PMID:11331621)
GO_REF:0000107		 RGD
Ensembl		 PMID:11331621 GO_REF:0000107 NCBI chr20:30,220,975...30,270,652
Ensembl chr20:29,678,222...29,727,891 		JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 located_in
is_active_in		 ISO
IBA
IEA		 (PMID:23542155)
GO_REF:0000033
(PMID:18425126), (PMID:26391951)
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:18425126 PMID:23542155 PMID:26391951 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:118,690,050...118,837,281
Ensembl chr 9:111,247,702...111,349,665 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      organelle 14290
        membraneless organelle 5412
          intracellular membraneless organelle 5412
            chromosome 1423
              sex chromosome 42
                X chromosome 11
                  Barr body 6
                  X chromosome located dosage compensation complex, transcription activating 0
paths to the root