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ONTOLOGY REPORT - ANNOTATIONS

Term:X chromosome
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Accession:GO:0000805 term browser browse the term
Definition:The sex chromosome present in both sexes of species in which the male is the heterogametic sex. Two copies of the X chromosome are present in each somatic cell of females and one copy is present in males.
Synonyms:xref: Wikipedia:X_chromosome
 never_in_taxon: NCBITaxon:8782 ! Aves


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X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 located_in IDA (PMID:17784788) MGI PMID:17784788 NCBI chr10:128,533,807...128,540,920
Ensembl chr10:128,533,808...128,540,900 		JBrowse link
G Firre functional intergenic repeating RNA element located_in ISO (PMID:24463464) ARUK-UCL PMID:24463464 NCBI chr  X:49,651,997...49,724,198
Ensembl chr  X:49,644,621...49,724,249 		JBrowse link
G Pcgf3 polycomb group ring finger 3 located_in IDA (PMID:28596365) UniProt PMID:28596365 NCBI chr 5:108,609,082...108,654,842
Ensembl chr 5:108,609,098...108,654,842 		JBrowse link
G Pcgf5 polycomb group ring finger 5 located_in IDA (PMID:28596365) UniProt PMID:28596365 NCBI chr19:36,325,729...36,438,370
Ensembl chr19:36,325,709...36,438,370 		JBrowse link
G Sin3b transcriptional regulator, SIN3B (yeast) located_in IDA (PMID:16787967) MGI PMID:16787967 NCBI chr 8:73,449,898...73,484,831
Ensembl chr 8:73,449,913...73,484,829 		JBrowse link
G Xist inactive X specific transcripts located_in IDA (PMID:24613346) MGI PMID:24613346 NCBI chr  X:102,503,979...102,526,839
Ensembl chr  X:102,503,972...102,537,573 		JBrowse link
Barr body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Firre functional intergenic repeating RNA element located_in ISO (PMID:24463464) ARUK-UCL PMID:24463464 NCBI chr  X:49,651,997...49,724,198
Ensembl chr  X:49,644,621...49,724,249 		JBrowse link
G H2az1 H2A.Z variant histone 1 NOT|located_in ISO (PMID:11331621) MGI PMID:11331621 NCBI chr 3:137,570,248...137,572,683
Ensembl chr 3:137,570,248...137,572,683 		JBrowse link
G H3f3a H3.3 histone A located_in IDA (PMID:15657431) MGI PMID:15657431 NCBI chr 1:180,630,125...180,641,127
Ensembl chr 1:180,628,397...180,641,508 		JBrowse link
G Lrif1 ligand dependent nuclear receptor interacting factor 1 located_in ISO
IDA		 (PMID:26391951) GO_Central
UniProt		 PMID:26391951 GO_REF:0000119 NCBI chr 3:106,592,256...106,643,893
Ensembl chr 3:106,592,303...106,643,893 		JBrowse link
G Macroh2a1 macroH2A.1 histone located_in ISO (PMID:11331621) MGI PMID:11331621 GO_REF:0000119 NCBI chr13:56,221,435...56,283,439
Ensembl chr13:56,221,432...56,284,174 		JBrowse link
G Macroh2a2 macroH2A.2 histone located_in ISO (PMID:11331621) MGI PMID:11331621 NCBI chr10:61,574,419...61,620,383
Ensembl chr10:61,574,444...61,619,926 		JBrowse link
G Smchd1 SMC hinge domain containing 1 is_active_in
located_in		 IBA
ISO
IDA		 (PMID:18425126), (PMID:26391951) GO_Central
UniProt		 PMID:18425126 PMID:26391951 GO_REF:0000033 GO_REF:0000119 NCBI chr17:71,651,484...71,782,361
Ensembl chr17:71,651,484...71,782,338 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 28574
    cellular anatomical structure 19618
      organelle 13760
        membraneless organelle 5101
          intracellular membraneless organelle 5101
            chromosome 1513
              sex chromosome 46
                X chromosome 12
                  Barr body 7
                  X chromosome located dosage compensation complex, transcription activating 0
paths to the root