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ONTOLOGY REPORT - ANNOTATIONS

Term:X chromosome
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Accession:GO:0000805 term browser browse the term
Definition:The sex chromosome present in both sexes of species in which the male is the heterogametic sex. Two copies of the X chromosome are present in each somatic cell of females and one copy is present in males.
Synonyms:xref: Wikipedia:X_chromosome
 never_in_taxon: NCBITaxon:8782 ! Aves


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X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:55,966,830...55,972,789
Ensembl chr12:55,966,781...55,972,789 		JBrowse link
G FIRRE firre intergenic repeating RNA element located_in IDA (PMID:24463464) ARUK-UCL PMID:24463464 NCBI chr  X:131,691,525...131,830,643
Ensembl chr  X:131,688,779...131,830,928 		JBrowse link
G PCGF3 polycomb group ring finger 3 located_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:705,832...770,089
Ensembl chr 4:705,748...770,089 		JBrowse link
G PCGF5 polycomb group ring finger 5 located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:91,156,219...91,284,337
Ensembl chr10:91,163,012...91,284,337 		JBrowse link
G SIN3B SIN3 transcription regulator family member B located_in IEA Ensembl GO_REF:0000107 NCBI chr19:16,829,398...16,880,349
Ensembl chr19:16,829,398...16,880,353 		JBrowse link
G XIST X inactive specific transcript located_in TAS (PMID:31048766) ARUK-UCL PMID:31048766 NCBI chr  X:73,820,656...73,852,714
Ensembl chr  X:73,820,649...73,852,723 		JBrowse link
Barr body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FIRRE firre intergenic repeating RNA element located_in IDA (PMID:24463464) ARUK-UCL PMID:24463464 NCBI chr  X:131,691,525...131,830,643
Ensembl chr  X:131,688,779...131,830,928 		JBrowse link
G H2AZ1 H2A.Z variant histone 1 NOT|located_in IDA (PMID:11331621) MGI PMID:11331621 NCBI chr 4:99,948,088...99,950,275
Ensembl chr 4:99,948,086...99,950,355 		JBrowse link
G H3-3A H3.3 histone A located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:226,061,831...226,072,019
Ensembl chr 1:226,061,851...226,072,019 		JBrowse link
G H3-3B H3.3 histone B located_in IEA Ensembl GO_REF:0000107 NCBI chr17:75,776,434...75,779,779
Ensembl chr17:75,776,434...75,785,893 		JBrowse link
G LRIF1 ligand dependent nuclear receptor interacting factor 1 located_in IEA
IDA		 (PMID:23542155) Ensembl
UniProt		 PMID:23542155 GO_REF:0000107 NCBI chr 1:110,874,957...110,963,922
Ensembl chr 1:110,947,190...110,963,965 		JBrowse link
G MACROH2A1 macroH2A.1 histone located_in IDA (PMID:11331621), (PMID:18936163) MGI PMID:11331621 PMID:18936163 NCBI chr 5:135,334,381...135,399,887
Ensembl chr 5:135,334,381...135,399,914 		JBrowse link
G MACROH2A2 macroH2A.2 histone located_in IDA (PMID:11331621) MGI PMID:11331621 NCBI chr10:70,052,846...70,112,282
Ensembl chr10:70,052,544...70,112,282 		JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 located_in
is_active_in		 IEA
IDA
IBA		 (PMID:23542155) Ensembl
UniProt
GO_Central		 PMID:23542155 GO_REF:0000033 GO_REF:0000107 NCBI chr18:2,655,726...2,805,017
Ensembl chr18:2,655,726...2,805,017 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21539
    cellular anatomical structure 21187
      organelle 16340
        membraneless organelle 6807
          intracellular membraneless organelle 6807
            chromosome 2110
              sex chromosome 45
                X chromosome 13
                  Barr body 8
                  X chromosome located dosage compensation complex, transcription activating 0
paths to the root