Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:X chromosome
go back to main search page
Accession:GO:0000805 term browser browse the term
Definition:The sex chromosome present in both sexes of species in which the male is the heterogametic sex. Two copies of the X chromosome are present in each somatic cell of females and one copy is present in males.
Synonyms:xref: Wikipedia:X_chromosome
 never_in_taxon: NCBITaxon:8782 ! Aves


show annotations for term's descendants           Sort by:
X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:32,940,225...32,946,236
Ensembl chr12:33,189,934...33,195,945 		JBrowse link
G PCGF3 polycomb group ring finger 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:802,990...874,063
Ensembl chr 4:746,137...805,443 		JBrowse link
G PCGF5 polycomb group ring finger 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:87,908,298...88,029,923
Ensembl chr10:91,492,201...91,549,737 		JBrowse link
G SIN3B SIN3 transcription regulator family member B located_in IEA Ensembl GO_REF:0000107 NCBI chr19:16,317,329...16,367,320
Ensembl chr19:17,296,161...17,345,533 		JBrowse link
Barr body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100970414 histone H3.3A located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447 		JBrowse link
G LOC100974647 core histone macro-H2A.2 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:66,526,013...66,585,568
Ensembl chr10:69,077,456...69,114,194 		JBrowse link
G LOC100974858 core histone macro-H2A.1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834 		JBrowse link
G LOC100974973 histone H2A.Z NOT|located_in ISO (PMID:11331621) MGI PMID:11331621 NCBI chr 4:92,371,150...92,373,454
Ensembl chr 4:103,030,469...103,033,397 		JBrowse link
G LOC100988671 histone H3.3A located_in IEA Ensembl GO_REF:0000107 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106 		JBrowse link
G LRIF1 ligand dependent nuclear receptor interacting factor 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:113,523,567...113,611,043
Ensembl chr 1:126,736,039...126,752,907 		JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr18:11,479,742...11,627,035
Ensembl chr18:13,785,912...13,933,887 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20338
    cellular anatomical structure 19904
      organelle 14886
        membraneless organelle 5588
          intracellular membraneless organelle 5588
            chromosome 1302
              sex chromosome 43
                X chromosome 11
                  Barr body 7
                  X chromosome located dosage compensation complex, transcription activating 0
paths to the root