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ONTOLOGY REPORT - ANNOTATIONS

Term:sex chromosome
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Accession:GO:0000803 term browser browse the term
Definition:A chromosome involved in sex determination.


show annotations for term's descendants           Sort by:
sex chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smc5 structural maintenance of chromosomes 5 located_in ISO (PMID:11408570) RGD PMID:11408570 NCBI chr 1:220,769,366...220,839,138
Ensembl chr 1:220,769,366...220,839,096 		JBrowse link
G Smc6 structural maintenance of chromosomes 6 located_in ISO (PMID:11408570) RGD PMID:11408570 NCBI chr 6:33,978,730...34,033,201
Ensembl chr 6:33,978,716...34,031,746 		JBrowse link
Barr body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2az1 H2A.Z variant histone 1 NOT|located_in ISO (PMID:11331621) RGD PMID:11331621 NCBI chr 2:226,355,668...226,357,984
Ensembl chr 2:226,355,708...226,358,485 		JBrowse link
G H3f3a H3.3 histone A located_in ISO (PMID:15657431) RGD PMID:15657431 NCBI chr13:92,533,289...92,544,902
Ensembl chr13:92,533,298...92,544,908 		JBrowse link
G Lrif1 ligand dependent nuclear receptor interacting factor 1 located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:26391951)
(PMID:23542155)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:23542155 PMID:26391951 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:194,231,397...194,322,489
Ensembl chr 2:194,230,951...194,322,483 		JBrowse link
G Macroh2a1 macroH2A.1 histone located_in ISO (PMID:11331621), (PMID:18936163) RGD PMID:11331621 PMID:18936163 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Macroh2a2 macroH2A.2 histone located_in ISO (PMID:11331621) RGD PMID:11331621 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891 		JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 located_in
is_active_in		 ISO
IBA		 (PMID:23542155)
(PMID:18425126), (PMID:26391951)
GO_REF:0000033		 RGD
GO_Central		 PMID:18425126 PMID:23542155 PMID:26391951 GO_REF:0000033 NCBI chr 9:111,243,445...111,387,272
Ensembl chr 9:111,247,702...111,349,665 		JBrowse link
inactive sex chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpu heterogeneous nuclear ribonucleoprotein U located_in IEA
ISO		 GO_REF:0000107
(PMID:14608463)
(PMID:20833368)		 Ensembl
RGD		 PMID:14608463 PMID:20833368 GO_REF:0000107 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
sex chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eed embryonic ectoderm development located_in ISO (PMID:15525528) RGD PMID:15525528 NCBI chr 1:143,867,875...143,895,008
Ensembl chr 1:143,867,875...143,894,974 		JBrowse link
G Pcgf2 polycomb group ring finger 2 located_in ISO (PMID:15525528) RGD PMID:15525528 NCBI chr10:82,682,563...82,694,563
Ensembl chr10:82,683,553...82,693,406 		JBrowse link
G Phc1 polyhomeotic homolog 1 located_in ISO (PMID:15525528) RGD PMID:15525528 NCBI chr 4:155,510,274...155,532,636
Ensembl chr 4:155,510,274...155,533,959 		JBrowse link
G Ring1 ring finger protein 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:15525528)		 Ensembl
RGD		 PMID:15525528 GO_REF:0000107 NCBI chr20:4,830,120...4,833,623
Ensembl chr20:4,830,053...4,833,620 		JBrowse link
G Rnf2 ring finger protein 2 located_in IEA
ISO		 GO_REF:0000107
(PMID:15525528)		 Ensembl
RGD		 PMID:15525528 GO_REF:0000107 NCBI chr13:63,553,964...63,584,047
Ensembl chr13:63,554,862...63,583,099 		JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit located_in ISO (PMID:15525528) RGD PMID:15525528 NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738 		JBrowse link
X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 located_in IEA
ISO		 GO_REF:0000107
(PMID:17784788)		 Ensembl
RGD		 PMID:17784788 GO_REF:0000107 NCBI chr 7:1,129,878...1,137,431
Ensembl chr 7:1,129,811...1,137,403 		JBrowse link
G Pcgf3 polycomb group ring finger 3 located_in ISO (PMID:28596365) RGD PMID:28596365 NCBI chr14:1,237,594...1,291,717
Ensembl chr14:1,233,947...1,291,793 		JBrowse link
G Pcgf5 polycomb group ring finger 5 located_in ISO (PMID:28596365) RGD PMID:28596365 NCBI chr 1:234,063,854...234,180,022
Ensembl chr 1:234,063,892...234,175,315 		JBrowse link
G Sin3b SIN3 transcription regulator family member B located_in ISO (PMID:16787967) RGD PMID:16787967 NCBI chr16:17,123,277...17,159,978
Ensembl chr16:17,123,434...17,159,978 		JBrowse link
G Xist X inactive specific transcript located_in ISO (PMID:24613346) RGD PMID:24613346 NCBI chr  X:68,474,987...68,492,500 JBrowse link
XY body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atr ATR serine/threonine kinase located_in ISO (PMID:18316482), (PMID:31839538) RGD PMID:18316482 PMID:31839538 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136 		JBrowse link
G Birc2 baculoviral IAP repeat-containing 2 IDA RGD PMID:16343737 RGD:1643531 NCBI chr 8:4,968,856...4,989,325
Ensembl chr 8:4,968,842...4,988,732 		JBrowse link
G Brca1 BRCA1, DNA repair associated located_in IEA
ISO		 GO_REF:0000107
(PMID:31839538)		 Ensembl
RGD		 PMID:31839538 GO_REF:0000107 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Daxx death-domain associated protein IDA RGD PMID:15349788 RGD:9587797 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843 		JBrowse link
G Dmrtc2 DMRT-like family C2 located_in ISO (PMID:17447844) RGD PMID:17447844 NCBI chr 1:80,466,259...80,473,883
Ensembl chr 1:80,466,132...80,473,531 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha located_in ISO (PMID:20577743) RGD PMID:20577743 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 located_in ISO (PMID:22699483) RGD PMID:22699483 NCBI chr15:40,034,566...40,052,295
Ensembl chr15:40,034,568...40,055,306
Ensembl chr15:40,034,568...40,055,306 		JBrowse link
G H2ax H2A.X variant histone located_in ISO (PMID:18070917), (PMID:18316482), (PMID:19074312), (PMID:20577743), (PMID:21539824), (PMID:22699483), (PMID:22854038), (PMID:23133398), (PMID:23810942), (PMID:25634095), (PMID:25675407), (PMID:26358182), (PMID:28031483), (PMID:31839538) RGD PMID:18070917 PMID:18316482 PMID:19074312 PMID:20577743 PMID:21539824 More... NCBI chr 8:44,671,907...44,673,262
Ensembl chr 8:44,671,786...44,673,239
Ensembl chr 4:44,671,786...44,673,239 		JBrowse link
G Hsf5 heat shock transcription factor 5 located_in ISO (PMID:37206036), (PMID:38684656) RGD PMID:37206036 PMID:38684656 NCBI chr10:72,417,216...72,460,394
Ensembl chr10:72,417,298...72,460,406 		JBrowse link
G Mael maelstrom spermatogenic transposon silencer located_in
NOT|located_in		 ISO (PMID:16787967)
(PMID:18694567)		 RGD PMID:16787967 PMID:18694567 NCBI chr13:78,457,073...78,496,657
Ensembl chr13:78,457,073...78,496,657 		JBrowse link
G Pbx4 PBX homeobox 4 located_in ISO (PMID:11335119) RGD PMID:11335119 NCBI chr16:19,555,089...19,590,054
Ensembl chr16:19,555,090...19,590,014 		JBrowse link
G Plk4 polo-like kinase 4 located_in IEA
ISO		 GO_REF:0000107
(PMID:22854038)		 Ensembl
RGD		 PMID:22854038 GO_REF:0000107 NCBI chr 2:123,802,527...123,820,942
Ensembl chr 2:123,802,512...123,820,942 		JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase located_in ISO (PMID:15383616) RGD PMID:15383616 NCBI chr 4:145,735,654...145,821,102
Ensembl chr 4:145,735,654...145,821,069 		JBrowse link
G Scml2 Scm polycomb group protein like 2 located_in ISO (PMID:25634095) RGD PMID:25634095 NCBI chr  X:33,523,179...33,677,672
Ensembl chr  X:33,524,530...33,652,742 		JBrowse link
G Sin3b SIN3 transcription regulator family member B located_in ISO (PMID:16787967) RGD PMID:16787967 NCBI chr16:17,123,277...17,159,978
Ensembl chr16:17,123,434...17,159,978 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 located_in ISO (PMID:16787967) RGD PMID:16787967 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
G Smarcc1 SWI/SNF related BAF chromatin remodeling complex subunit C1 located_in ISO (PMID:16787967) RGD PMID:16787967 NCBI chr 8:110,111,097...110,214,734
Ensembl chr 8:110,111,122...110,214,720 		JBrowse link
G Spdya speedy/RINGO cell cycle regulator family member A located_in ISO (PMID:28031483) RGD PMID:28031483 NCBI chr 6:23,905,574...23,954,926
Ensembl chr 6:23,910,223...23,954,850 		JBrowse link
G Sumo1 small ubiquitin-like modifier 1 located_in IDA
ISO		 (PMID:25634095) RGD PMID:25634095 PMID:15349788 RGD:9587797 NCBI chr 9:61,078,790...61,108,697
Ensembl chr 9:61,077,435...61,108,761 		JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A located_in ISO (PMID:15383616) RGD PMID:15383616 NCBI chr  X:116,114,339...116,125,076
Ensembl chr  X:116,113,875...116,125,070 		JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B located_in ISO (PMID:15383616) RGD PMID:15383616 NCBI chr10:36,248,434...36,263,379
Ensembl chr10:36,248,438...36,264,665 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 located_in ISO (PMID:25634095) RGD PMID:25634095 NCBI chr10:6,880,684...6,925,355
Ensembl chr10:6,828,795...6,925,355 		JBrowse link
G Zcwpw1 zinc finger CW-type and PWWP domain containing 1 located_in ISO (PMID:31453335), (PMID:32744506) RGD PMID:31453335 PMID:32744506 NCBI chr12:18,880,625...18,910,713
Ensembl chr12:18,880,633...18,910,711 		JBrowse link
Y chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 located_in IEA
ISO		 GO_REF:0000107
(PMID:17784788)		 Ensembl
RGD		 PMID:17784788 GO_REF:0000107 NCBI chr 7:1,129,878...1,137,431
Ensembl chr 7:1,129,811...1,137,403 		JBrowse link
G Sin3b SIN3 transcription regulator family member B located_in ISO (PMID:16787967) RGD PMID:16787967 NCBI chr16:17,123,277...17,159,978
Ensembl chr16:17,123,434...17,159,978 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      organelle 14240
        membraneless organelle 5379
          intracellular membraneless organelle 5379
            chromosome 1403
              sex chromosome 42
                W chromosome 0
                X chromosome + 11
                XY body 23
                Y chromosome 2
                Z chromosome 0
                active sex chromosome 0
                dosage compensation complex + 0
                inactive sex chromosome + 1
                sex chromatin + 6
paths to the root