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ONTOLOGY REPORT - ANNOTATIONS

Term:synaptonemal complex
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Accession:GO:0000795 term browser browse the term
Definition:A proteinaceous scaffold found between homologous chromosomes during meiosis. It consists of 2 lateral elements and a central element, all running parallel to each other. Transverse filaments connect the lateral elements to the central element.
Synonyms:alt_id: GO:0005716
 xref: Wikipedia:Synaptonemal_complex
 never_in_taxon: NCBITaxon:4896 ! Schizosaccharomyces pombe

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synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004624825:4,842,246...4,860,758
Ensembl chrNW_004624825:4,853,388...4,860,217 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 (inactive) located_in ISO (PMID:12764197) UniProt PMID:12764197 NCBI chrNW_004624740:14,369,214...14,400,560
Ensembl chrNW_004624740:14,369,164...14,400,480 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (PMID:22854038) MGI PMID:22854038 NCBI chrNW_004624772:18,379,154...18,403,456
Ensembl chrNW_004624772:18,379,745...18,403,745 		JBrowse link
G Hormad2 HORMA domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:6,388,679...6,493,583
Ensembl chrNW_004624747:6,388,710...6,494,967 		JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:36,476,372...36,478,548 JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:12584241) MGI PMID:12584241 NCBI chrNW_004624926:405,354...422,492
Ensembl chrNW_004624926:407,362...419,566 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chrNW_004624875:2,871,944...2,907,757
Ensembl chrNW_004624875:2,872,357...2,893,967 		JBrowse link
G Mlh1 mutL homolog 1 located_in ISO PMID:16968740
(PMID:15467367), (PMID:16260499)		 MGI PMID:15467367 PMID:16260499 PMID:16968740 RGD:8554354 NCBI chrNW_004624788:15,110,436...15,160,462
Ensembl chrNW_004624788:15,110,658...15,160,535 		JBrowse link
G Mlh3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:26,642,800...26,677,187
Ensembl chrNW_004624734:26,642,946...26,674,315 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO (PMID:10809667), (PMID:16260499) MGI PMID:10809667 PMID:16260499 NCBI chrNW_004624742:21,098,102...21,167,472
Ensembl chrNW_004624742:21,098,101...21,167,398 		JBrowse link
G Msh5 mutS homolog 5 located_in ISO (PMID:16260499) MGI PMID:16260499 NCBI chrNW_004624754:24,453,750...24,477,574
Ensembl chrNW_004624754:24,453,902...24,473,051 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 (inactive) ISO RGD PMID:1363622 RGD:633987 NCBI chrNW_004624795:1,943,113...1,947,365
Ensembl chrNW_004624795:1,943,300...1,947,459 		JBrowse link
G Plk1 polo like kinase 1 located_in ISO (PMID:22854038) MGI PMID:22854038 NCBI chrNW_004624782:8,811,593...8,823,060
Ensembl chrNW_004624782:8,811,616...8,826,749 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624820:8,361,345...8,369,356
Ensembl chrNW_004624820:8,361,400...8,368,347 		JBrowse link
G Rnf212 ring finger protein 212 located_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624755:26,081,943...26,120,967
Ensembl chrNW_004624755:26,082,378...26,120,655 		JBrowse link
G Rnf212b ring finger protein 212B located_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624820:9,268,727...9,322,963 JBrowse link
G Smc1a structural maintenance of chromosomes 1A ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chrNW_004624909:617,015...668,513
Ensembl chrNW_004624909:630,062...668,512 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:11564881), (PMID:16968740) MGI PMID:11564881 PMID:16968740 NCBI chrNW_004624752:4,255,829...4,320,257
Ensembl chrNW_004624752:4,255,897...4,320,665 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chrNW_004624737:35,698,722...35,730,854
Ensembl chrNW_004624737:35,694,566...35,730,829 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:10698974) MGI PMID:10698974 NCBI chrNW_004624740:16,706,695...16,734,142
Ensembl chrNW_004624740:16,707,999...16,732,537 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624737:12,290,317...12,297,823
Ensembl chrNW_004624737:12,290,276...12,297,924 		JBrowse link
G Syce1l synaptonemal complex central element protein 1 like located_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624746:9,660,721...9,730,316 JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO
IEA		 RGD
InterPro		 PMID:8660935 GO_REF:0000002 RGD:9686370 NCBI chrNW_004624772:10,524,656...10,699,894
Ensembl chrNW_004624772:10,525,203...10,699,560 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in ISO (PMID:18316482), (PMID:26362258) RGD
MGI		 PMID:9592139 PMID:18316482 PMID:26362258 RGD:69387 NCBI chrNW_004624741:26,108,446...26,208,184
Ensembl chrNW_004624741:26,122,385...26,203,154 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624750:6,345,112...6,358,724
Ensembl chrNW_004624750:6,349,400...6,358,180 		JBrowse link
G Syn1 synapsin I located_in ISO (PMID:14736746) MGI PMID:14736746 NCBI chrNW_004624978:110,640...179,910
Ensembl chrNW_004624978:110,506...180,568 		JBrowse link
G Tex12 testis expressed 12 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624784:7,317,642...7,324,128
Ensembl chrNW_004624784:7,317,507...7,322,619 		JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUNH14orf39 chromosome unknown C14orf39 homolog located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624734:40,656,054...40,701,404
Ensembl chrNW_004624734:40,656,132...40,702,148 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:12584241) MGI PMID:12584241 NCBI chrNW_004624926:405,354...422,492
Ensembl chrNW_004624926:407,362...419,566 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in ISO (PMID:15944401), (PMID:22164254) HGNC-UCL PMID:15944401 PMID:22164254 NCBI chrNW_004624737:12,290,317...12,297,823
Ensembl chrNW_004624737:12,290,276...12,297,924 		JBrowse link
G Syce2 synaptonemal complex central element protein 2 located_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624901:478,860...491,577 JBrowse link
G Syce3 synaptonemal complex central element protein 3 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:204,242...235,081
Ensembl chrNW_004624752:218,587...234,971 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:10,524,656...10,699,894
Ensembl chrNW_004624772:10,525,203...10,699,560 		JBrowse link
G Tex12 testis expressed 12 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624784:7,317,642...7,324,128
Ensembl chrNW_004624784:7,317,507...7,322,619 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase located_in ISO (PMID:10728666) UniProt PMID:10728666 NCBI chrNW_004624768:17,422,267...17,522,894
Ensembl chrNW_004624768:17,421,291...17,522,799 		JBrowse link
G Brca1 BRCA1 DNA repair associated located_in ISO (PMID:9774970) MGI PMID:9774970 NCBI chrNW_004624795:1,186,043...1,238,986
Ensembl chrNW_004624795:1,188,136...1,241,964 		JBrowse link
G Brca2 BRCA2 DNA repair associated located_in ISO (PMID:9774970) MGI PMID:9774970 NCBI chrNW_004624776:5,497,552...5,573,465
Ensembl chrNW_004624776:5,497,779...5,550,993 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in ISO (PMID:30718482) MGI PMID:30718482 NCBI chrNW_004624752:9,547,327...9,585,549
Ensembl chrNW_004624752:9,548,015...9,585,958 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:19283064) MGI PMID:19283064 NCBI chrNW_004624926:405,354...422,492
Ensembl chrNW_004624926:407,362...419,566 		JBrowse link
G Kash5 KASH domain containing 5 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624832:4,783,593...4,806,025
Ensembl chrNW_004624832:4,783,766...4,803,325 		JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624819:4,629,655...4,779,472
Ensembl chrNW_004624819:4,662,800...4,838,842 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO (PMID:21743440) MGI PMID:21743440 NCBI chrNW_004624741:2,486,612...2,542,452
Ensembl chrNW_004624741:2,485,471...2,542,500 		JBrowse link
G Rad51 RAD51 recombinase located_in ISO (PMID:18694567), (PMID:21743440)
(PMID:9774970)		 MGI PMID:9774970 PMID:18694567 PMID:21743440 NCBI chrNW_004624804:7,957,175...7,983,078
Ensembl chrNW_004624804:7,957,253...7,983,619 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624820:8,361,345...8,369,356
Ensembl chrNW_004624820:8,361,400...8,368,347 		JBrowse link
G Rpa1 replication protein A1 located_in ISO (PMID:21743440), (PMID:22711701) MGI PMID:21743440 PMID:22711701 NCBI chrNW_004624786:4,547,889...4,604,605
Ensembl chrNW_004624786:4,547,962...4,604,290 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A ISO MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chrNW_004624909:617,015...668,513
Ensembl chrNW_004624909:630,062...668,512 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:15870106), (PMID:22711701) MGI PMID:15870106 PMID:22711701 NCBI chrNW_004624752:4,255,829...4,320,257
Ensembl chrNW_004624752:4,255,897...4,320,665 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624737:35,698,722...35,730,854
Ensembl chrNW_004624737:35,694,566...35,730,829 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:22711701) MGI PMID:22711701 NCBI chrNW_004624740:16,706,695...16,734,142
Ensembl chrNW_004624740:16,707,999...16,732,537 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:26,108,446...26,208,184
Ensembl chrNW_004624741:26,122,385...26,203,154 		JBrowse link
G Sycp2l synaptonemal complex protein 2 like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:14,999,209...15,084,967
Ensembl chrNW_004624756:14,996,868...15,084,285 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO PMID:9933407
(PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 UniProt
MGI		 PMID:9933407 PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 More... RGD:11035335 NCBI chrNW_004624750:6,345,112...6,358,724
Ensembl chrNW_004624750:6,349,400...6,358,180 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:15870106) MGI PMID:15870106 NCBI chrNW_004624740:16,706,695...16,734,142
Ensembl chrNW_004624740:16,707,999...16,732,537 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO
IEA		 RGD
TreeGrafter		 PMID:1464329 GO_REF:0000118 RGD:729937 NCBI chrNW_004624772:10,524,656...10,699,894
Ensembl chrNW_004624772:10,525,203...10,699,560 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:15870106) MGI PMID:15870106 NCBI chrNW_004624750:6,345,112...6,358,724
Ensembl chrNW_004624750:6,349,400...6,358,180 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18615
    cellular anatomical structure 18480
      synaptonemal structure 40
        synaptonemal complex 40
          central element 7
          lateral element 18
          transverse filament 3
Path 2
Term Annotations click to browse term
  cellular_component 18615
    cellular anatomical structure 18480
      organelle 13123
        intracellular organelle 12722
          intracellular membrane-bounded organelle 11503
            nucleus 7393
              nuclear lumen 4038
                nuclear chromosome 214
                  condensed nuclear chromosome 77
                    synaptonemal structure 40
                      synaptonemal complex 40
                        central element 7
                        lateral element 18
                        transverse filament 3
paths to the root