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ONTOLOGY REPORT - ANNOTATIONS

Term:condensed nuclear chromosome
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Accession:GO:0000794 term browser browse the term
Definition:A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome.
Comment:Note that this term and its children can be used to annotate gene products that localize to a mitotic chromosome in an organism that undergoes a 'closed mitosis' in which the nuclear envelope does not break down during mitosis and for gene products that localize to a meiotic chromosome.
Synonyms:related_synonym: meiotic chromosome;   nuclear mitotic chromosome


show annotations for term's descendants           Sort by:
condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Add3 adducin 3 located_in ISO (PMID:1864459) RGD PMID:1864459 NCBI chr 1:252,147,341...252,255,126
Ensembl chr 1:252,147,386...252,255,124 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 located_in ISO (PMID:22863743) RGD PMID:22863743 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230 		JBrowse link
G Brca1 BRCA1, DNA repair associated located_in ISO (PMID:20551173), (PMID:26490168) RGD PMID:20551173 PMID:26490168 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Brd4 bromodomain containing 4 located_in ISO (PMID:10938129)
(PMID:10938129), (PMID:16339075), (PMID:18039861)		 RGD PMID:10938129 PMID:16339075 PMID:18039861 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in ISO (PMID:24891606) RGD PMID:24891606 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475 		JBrowse link
G Cdx2 caudal type homeo box 2 located_in ISO (PMID:15509711) RGD PMID:15509711 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Chek1 checkpoint kinase 1 located_in ISO
ISS		 (PMID:9382850)
GO_REF:0000024		 RGD
UniProt		 PMID:9382850 GO_REF:0000024 NCBI chr 8:36,420,565...36,443,477
Ensembl chr 8:36,420,569...36,441,009 		JBrowse link
G Chmp1a charged multivesicular body protein 1A located_in ISO (PMID:11559747) RGD PMID:11559747 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254), (PMID:22530760), (PMID:22711701), (PMID:27760146)		 GO_Central
RGD		 PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 PMID:22530760 More... GO_REF:0000033 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like located_in IEA
ISO		 GO_REF:0000107
(PMID:16543361)		 Ensembl
RGD		 PMID:16543361 GO_REF:0000107 NCBI chr20:10,614,933...10,629,337
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G H1f6 H1.6 linker histone, cluster member located_in ISO (PMID:18316482) RGD PMID:18316482 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119 		JBrowse link
G H2ax H2A.X variant histone located_in ISO (PMID:20551173), (PMID:22164254), (PMID:22711701), (PMID:23555294), (PMID:26490168) RGD PMID:20551173 PMID:22164254 PMID:22711701 PMID:23555294 PMID:26490168 NCBI chr 8:44,671,907...44,673,262
Ensembl chr 8:44,671,786...44,673,239 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (PMID:22164254), (PMID:22530760) RGD PMID:22164254 PMID:22530760 NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383 		JBrowse link
G Iho1 interactor of HORMAD1 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:27723721)		 GO_Central
RGD		 PMID:27723721 GO_REF:0000033 NCBI chr 8:109,091,134...109,126,386
Ensembl chr 8:109,092,758...109,125,434 		JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO (PMID:16298999) RGD PMID:16298999 NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) RGD PMID:9001252 NCBI chr10:67,717,808...67,741,141
Ensembl chr10:67,717,812...67,798,414 		JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:12762840)		 HGNC-UCL
Ensembl
RGD		 PMID:12762840 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:9,859,816...9,942,294
Ensembl chr 6:9,859,867...9,942,293 		JBrowse link
G Mlh1 mutL homolog 1 located_in ISO (PMID:18316482), (PMID:23555294), (PMID:24891606) RGD PMID:18316482 PMID:23555294 PMID:24891606 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (PMID:24891606) RGD PMID:24891606 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease IDA sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO (PMID:18316482), (PMID:22164254), (PMID:23555294) RGD PMID:18316482 PMID:22164254 PMID:23555294 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 4:157,968,814...157,992,314
Ensembl chr 4:157,968,815...157,992,020 		JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 8:25,437,067...25,506,375
Ensembl chr 8:25,437,123...25,506,373 		JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 6:137,342,449...137,418,083
Ensembl chr 6:137,342,943...137,415,159 		JBrowse link
G Ncaph non-SMC condensin I complex, subunit H located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 3:114,371,937...114,399,178
Ensembl chr 3:114,371,941...114,399,180 		JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 located_in IEA
ISO		 GO_REF:0000107
(PMID:25474630)		 Ensembl
RGD		 PMID:25474630 GO_REF:0000107 NCBI chr 7:120,422,926...120,439,942
Ensembl chr 7:120,422,956...120,439,938 		JBrowse link
G Nek2 NIMA-related kinase 2 located_in ISO (PMID:15479717) RGD PMID:15479717 NCBI chr13:103,405,818...103,419,063
Ensembl chr13:103,405,819...103,419,051 		JBrowse link
G Nifk nucleolar protein interacting with the FHA domain of MKI67 located_in ISO
IEA		 (PMID:11342549)
GO_REF:0000107		 RGD
Ensembl		 PMID:11342549 GO_REF:0000107 NCBI chr13:29,393,303...29,403,387
Ensembl chr13:29,393,286...29,405,896 		JBrowse link
G Nol6 nucleolar protein 6 located_in ISO (PMID:11895476) RGD PMID:11895476 NCBI chr 5:56,259,919...56,270,540
Ensembl chr 5:56,260,830...56,270,336 		JBrowse link
G Psmc3ip PSMC3 interacting protein is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:86,024,281...86,027,928
Ensembl chr10:86,023,950...86,027,423 		JBrowse link
G Rad21 RAD21 cohesin complex component located_in ISO (PMID:24797475) RGD PMID:24797475 NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO (PMID:24797475) RGD PMID:24797475 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298 		JBrowse link
G Rad50 RAD50 double strand break repair protein is_active_in IDA
IBA		 sex vesicles/chromatin of XY bivalent
GO_REF:0000033		 GO_Central
RGD		 PMID:10855503 GO_REF:0000033, RGD:2300257 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396 		JBrowse link
G Rad51 RAD51 recombinase is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:14668445), (PMID:18283110), (PMID:20551173), (PMID:22164254), (PMID:22530760), (PMID:23555294), (PMID:24891606), (PMID:26490168), (PMID:27760146)		 GO_Central
RGD		 PMID:14668445 PMID:18283110 PMID:20551173 PMID:22164254 PMID:22530760 More... GO_REF:0000033 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 located_in ISO (PMID:15014043) RGD PMID:15014043 NCBI chr 5:144,526,025...144,544,445
Ensembl chr 5:144,526,025...144,544,577 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (PMID:18084284), (PMID:22164254), (PMID:24797475) RGD PMID:18084284 PMID:22164254 PMID:24797475 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rpa1 replication protein A1 located_in ISO (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254) RGD PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog located_in ISO (PMID:19465021) RGD PMID:19465021 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140 		JBrowse link
G Rsph1 radial spoke head component 1 located_in ISO (PMID:9578619) RGD PMID:9578619 NCBI chr20:9,341,910...9,360,640
Ensembl chr20:9,341,913...9,360,640 		JBrowse link
G Shoc1 shortage in chiasmata 1 located_in ISO (PMID:29742103) RGD PMID:29742103 NCBI chr 5:73,864,423...73,956,487
Ensembl chr 5:73,866,334...73,956,444 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:22164254) RGD PMID:22164254 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc2 structural maintenance of chromosomes 2 located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 5:66,806,882...66,853,478
Ensembl chr 5:66,807,011...66,853,242 		JBrowse link
G Smc4 structural maintenance of chromosomes 4 located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 2:153,240,243...153,268,722
Ensembl chr 2:153,240,283...153,271,571 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:22164254), (PMID:24797475) RGD PMID:22164254 PMID:24797475 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sun2 Sad1 and UNC84 domain containing 2 located_in ISO (PMID:17452644) RGD PMID:17452644 NCBI chr 7:111,275,374...111,292,565
Ensembl chr 7:111,275,380...111,292,553 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (PMID:22854038), (PMID:22863743), (PMID:24589552), (PMID:24891606) RGD PMID:22854038 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:18316482), (PMID:21621532), (PMID:22863743), (PMID:24589552), (PMID:24891606) RGD PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Tex11 testis expressed 11 located_in ISO (PMID:18316482) RGD PMID:18316482 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 located_in ISO (PMID:14718568) RGD PMID:14718568 NCBI chr 8:103,887,805...103,931,662
Ensembl chr 8:103,887,865...103,931,674 		JBrowse link
G Ttn titin located_in ISO (PMID:9548712) RGD PMID:9548712 NCBI chr 3:61,652,432...61,924,912
Ensembl chr 3:61,652,439...61,924,741 		JBrowse link
G Tubg1 tubulin, gamma 1 located_in ISO (PMID:15007207) RGD PMID:15007207 NCBI chr10:86,052,845...86,059,436
Ensembl chr10:86,052,743...86,059,433 		JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Farsa phenylalanyl-tRNA synthetase subunit alpha is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:23,291,409...23,300,985
Ensembl chr19:23,268,869...23,300,980 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:12584241) RGD PMID:12584241 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Six6os1 Six6 opposite strand transcript 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:27796301)		 GO_Central
RGD		 PMID:27796301 GO_REF:0000033 NCBI chr 6:91,579,185...91,615,183
Ensembl chr 6:91,579,325...91,615,148 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in ISO (PMID:15944401), (PMID:22164254) RGD PMID:15944401 PMID:22164254 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce2 synaptonemal complex central element protein 2 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:15944401), (PMID:22164254), (PMID:22854038)		 GO_Central
RGD		 PMID:15944401 PMID:22164254 PMID:22854038 GO_REF:0000033 NCBI chr19:23,266,236...23,291,265
Ensembl chr19:23,268,869...23,300,980 		JBrowse link
G Syce3 synaptonemal complex central element protein 3 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:21637789), (PMID:22164254)		 GO_Central
RGD		 PMID:21637789 PMID:22164254 GO_REF:0000033 NCBI chr 7:120,456,800...120,482,882
Ensembl chr 7:120,456,800...120,482,973 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in
is_active_in		 IEA
ISO
IBA		 GO_REF:0000107
(PMID:12584241), (PMID:23133398)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:12584241 PMID:23133398 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Tex11 testis expressed 11 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:18316482)		 GO_Central
RGD		 PMID:18316482 GO_REF:0000033 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Tex12 testis expressed 12 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:16968740), (PMID:22164254), (PMID:22854038)		 GO_Central
RGD		 PMID:16968740 PMID:22164254 PMID:22854038 GO_REF:0000033 NCBI chr 8:50,908,161...50,913,202
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hus1 HUS1 checkpoint clamp component part_of ISO
IBA		 (PMID:31776186), (PMID:36841485)
GO_REF:0000033		 RGD
GO_Central		 PMID:31776186 PMID:36841485 GO_REF:0000033 NCBI chr14:83,688,702...83,703,466
Ensembl chr14:83,688,708...83,703,442 		JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease part_of ISO
IBA		 (PMID:31776186), (PMID:36841485)
GO_REF:0000033		 RGD
GO_Central		 PMID:31776186 PMID:36841485 GO_REF:0000033 NCBI chr 2:59,461,597...59,469,707
Ensembl chr 2:59,461,607...59,469,689 		JBrowse link
G Rad9a RAD9 checkpoint clamp component A part_of ISO
IBA		 (PMID:31776186), (PMID:36841485)
GO_REF:0000033		 RGD
GO_Central		 PMID:31776186 PMID:36841485 GO_REF:0000033 NCBI chr 1:201,488,511...201,553,582
Ensembl chr 1:201,487,136...201,553,608 		JBrowse link
G Rad9b RAD9 checkpoint clamp component B part_of IEA
IBA		 GO_REF:0000104
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000104 NCBI chr12:34,217,868...34,248,380
Ensembl chr12:34,218,024...34,248,372 		JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:17291760), (PMID:17696610), (PMID:21743440), (PMID:28031483), (PMID:30718482), (PMID:31839538)		 Ensembl
RGD		 PMID:17291760 PMID:17696610 PMID:21743440 PMID:28031483 PMID:30718482 More... GO_REF:0000107 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (PMID:12091911), (PMID:17696610) RGD PMID:12091911 PMID:17696610 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:27760146)		 Ensembl
RGD		 PMID:27760146 GO_REF:0000107 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase located_in ISO (PMID:10728666) RGD PMID:10728666 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Brca1 BRCA1, DNA repair associated located_in ISO
IEA		 (PMID:9774970)
GO_REF:0000107		 RGD
Ensembl		 PMID:9774970 GO_REF:0000107 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Brca2 BRCA2, DNA repair associated located_in ISO
IEA		 (PMID:9774970)
GO_REF:0000107		 RGD
Ensembl		 PMID:9774970 GO_REF:0000107 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in ISO (PMID:30718482) RGD PMID:30718482 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:19283064) RGD PMID:19283064 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Kash5 KASH domain containing 5 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:24062341)		 GO_Central
RGD		 PMID:24062341 GO_REF:0000033 NCBI chr 1:95,668,918...95,691,353
Ensembl chr 1:95,668,886...95,691,368 		JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:20551173)		 GO_Central
RGD		 PMID:20551173 GO_REF:0000033 NCBI chr 8:82,765,661...82,939,649
Ensembl chr 8:82,765,661...82,939,649 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO (PMID:21743440) RGD PMID:21743440 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298 		JBrowse link
G Rad51 RAD51 recombinase located_in ISO (PMID:9774970)
(PMID:18694567), (PMID:21743440)		 RGD PMID:9774970 PMID:18694567 PMID:21743440 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (PMID:15870106), (PMID:32328639) RGD PMID:15870106 PMID:32328639 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rpa1 replication protein A1 located_in ISO (PMID:21743440), (PMID:22711701) RGD PMID:21743440 PMID:22711701 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A IDA MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chr  X:21,103,323...21,148,053
Ensembl chr  X:21,103,282...21,148,056 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:15870106), (PMID:22711701) RGD PMID:15870106 PMID:22711701 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in IEA
ISO		 GO_REF:0000107
(PMID:15870106), (PMID:22711701), (PMID:32328639)		 Ensembl
RGD		 PMID:15870106 PMID:22711701 PMID:32328639 GO_REF:0000107 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:22711701) RGD PMID:22711701 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in
is_active_in		 IDA
ISO
IBA
IEA		 PMID:9933407
(PMID:18283110), (PMID:22011390), (PMID:22711701), (PMID:23133398)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 PMID:9933407 GO_REF:0000033 GO_REF:0000107, RGD:11035335 NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789 		JBrowse link
G Sycp2l synaptonemal complex protein 2-like is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:26362258)		 GO_Central
RGD		 PMID:26362258 GO_REF:0000033 NCBI chr17:23,589,217...23,645,273
Ensembl chr17:23,592,899...23,648,306 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in IDA
ISO		 PMID:9933407
(PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 RGD PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 PMID:21743440 More... RGD:11035335 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msh4 mutS homolog 4 located_in ISO (PMID:27760146) RGD PMID:27760146 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in ISO (PMID:24390283) RGD PMID:24390283 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475 		JBrowse link
G Fam9c family with sequence similarity 9, member C is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:146,236,386...146,256,079
Ensembl chr  X:146,236,934...146,256,051 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:12764197)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:12764197 GO_REF:0000024 GO_REF:0000107 NCBI chr12:21,318,251...21,390,350
Ensembl chr12:21,319,568...21,390,350 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (PMID:22854038) RGD PMID:22854038 NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383 		JBrowse link
G Hormad2 HORMA domain containing 2 located_in ISO (PMID:22854038) RGD PMID:22854038 NCBI chr14:79,215,013...79,300,447
Ensembl chr14:79,214,998...79,299,910 		JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 located_in ISO (PMID:8622925) RGD PMID:8622925 NCBI chr 6:95,128,504...95,131,281
Ensembl chr 6:95,128,350...95,131,287 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:12584241) RGD PMID:12584241 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) RGD PMID:9001252 NCBI chr10:67,717,808...67,741,141
Ensembl chr10:67,717,812...67,798,414 		JBrowse link
G LOC100911047 X-linked lymphocyte-regulated protein 3A-like is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,935,437...150,947,126
Ensembl chr  X:150,935,511...150,946,614
Ensembl chr  X:150,935,511...150,946,614 		JBrowse link
G LOC134484028 X-linked lymphocyte-regulated protein 3A-like is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Mlh1 mutL homolog 1 located_in IEA
ISO
IDA		 GO_REF:0000107
(PMID:15467367), (PMID:16260499)
PMID:16968740		 Ensembl
RGD		 PMID:15467367 PMID:16260499 PMID:16968740 GO_REF:0000107, RGD:8554354 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (PMID:15467367), (PMID:16260499) RGD PMID:15467367 PMID:16260499 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO (PMID:10809667), (PMID:16260499) RGD PMID:10809667 PMID:16260499 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
G Msh5 mutS homolog 5 located_in ISO (PMID:16260499) RGD PMID:16260499 NCBI chr20:3,773,867...3,793,337
Ensembl chr20:3,776,942...3,793,336 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 IDA RGD PMID:1363622 RGD:633987 NCBI chr10:85,338,158...85,345,108
Ensembl chr10:85,338,161...85,345,093 		JBrowse link
G Plk1 polo-like kinase 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:22854038)		 Ensembl
RGD		 PMID:22854038 GO_REF:0000107 NCBI chr 1:176,716,420...176,726,400
Ensembl chr 1:176,716,420...176,726,400 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (PMID:12759374) RGD PMID:12759374 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rnf212 ring finger protein 212 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:23396135), (PMID:24390283)		 GO_Central
RGD		 PMID:23396135 PMID:24390283 GO_REF:0000033 NCBI chr14:949,397...988,377
Ensembl chr14:949,448...987,831 		JBrowse link
G Rnf212b ring finger protein 212B located_in IEA
ISO		 GO_REF:0000107
(PMID:38865271)		 Ensembl
RGD		 PMID:38865271 GO_REF:0000107 NCBI chr15:28,274,629...28,321,093
Ensembl chr15:28,244,083...28,321,347 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A IDA MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr  X:21,103,323...21,148,053
Ensembl chr  X:21,103,282...21,148,056 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:11564881), (PMID:16968740) RGD PMID:11564881 PMID:16968740 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 IDA MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in TAS
ISO		 (PMID:10698974) RGD PMID:10698974 PMID:11599053 RGD:727325 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in
is_active_in		 IDA
IBA		 PMID:16968740
GO_REF:0000033		 GO_Central PMID:16968740 GO_REF:0000033, RGD:8554354 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce1l synaptonemal complex central element protein 1-like is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:41,625,074...41,635,541
Ensembl chr19:41,617,180...41,635,526 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in IDA
ISO
IEA		 (PMID:12815066), (PMID:15937223), (PMID:16968740), (PMID:17696610), (PMID:18070917), (PMID:18316482), (PMID:20551173), (PMID:22011390), (PMID:25675407), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482)
GO_REF:0000002		 RGD
InterPro		 PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 PMID:18070917 More... GO_REF:0000002, RGD:9686370, RGD:8554354 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in IDA
ISO		 (PMID:18316482), (PMID:26362258) RGD PMID:18316482 PMID:26362258 PMID:9592139 RGD:69387 NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in
is_active_in		 ISO
IBA		 (PMID:9774970)
(PMID:12815066), (PMID:14736746), (PMID:15657431), (PMID:16428451), (PMID:16968740), (PMID:17141210), (PMID:17696610), (PMID:17912366), (PMID:18070917), (PMID:20551173), (PMID:22854038), (PMID:23810942), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482), (PMID:31839538)
GO_REF:0000033		 RGD
GO_Central		 PMID:9774970 PMID:12815066 PMID:14736746 PMID:15657431 PMID:16428451 More... GO_REF:0000033 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Sycp3l1 synaptonemal complex protein 3 like 1 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:186,108,544...186,111,598
Ensembl chr 1:186,108,920...186,109,630 		JBrowse link
G Syn1 synapsin I located_in ISO (PMID:14736746) RGD PMID:14736746 NCBI chr  X:1,172,208...1,227,400
Ensembl chr  X:1,172,208...1,227,396 		JBrowse link
G Tex11 testis expressed 11 located_in ISO (PMID:18369460) RGD PMID:18369460 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Tex12 testis expressed 12 located_in ISO (PMID:16968740) RGD PMID:16968740 NCBI chr 8:50,908,161...50,913,202
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
G Xlr3a X-linked lymphocyte-regulated 3A is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,967,914...150,978,992
Ensembl chr  X:150,967,919...150,978,992 		JBrowse link
G Xlr4a X-linked lymphocyte-regulated 4A is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,916,647...150,925,201
Ensembl chr  X:150,916,932...150,929,786 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:15870106) RGD PMID:15870106 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in
is_active_in		 IDA
IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
(PMID:15870106), (PMID:18283110), (PMID:21539824), (PMID:22711701)		 Ensembl
GO_Central
RGD		 PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701 PMID:1464329 GO_REF:0000033 GO_REF:0000107, RGD:729937 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:15870106) RGD PMID:15870106 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20827
    cellular anatomical structure 20627
      organelle 13970
        membraneless organelle 5266
          intracellular membraneless organelle 5266
            chromosome 1385
              nuclear chromosome 226
                condensed nuclear chromosome 86
                  checkpoint clamp complex 4
                  chiasma 2
                  meiotic recombination initiation complex 0
                  pairing center 0
                  recombination nodule + 2
                  synapsis initiation complex 0
                  synaptonemal structure + 48
Path 2
Term Annotations click to browse term
  cellular_component 20827
    cellular anatomical structure 20627
      organelle 13970
        intracellular organelle 13564
          intracellular membrane-bounded organelle 12005
            nucleus 7451
              nuclear lumen 4053
                nuclear chromosome 226
                  condensed nuclear chromosome 86
                    checkpoint clamp complex 4
                    chiasma 2
                    meiotic recombination initiation complex 0
                    pairing center 0
                    recombination nodule + 2
                    synapsis initiation complex 0
                    synaptonemal structure + 48
paths to the root