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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleosome
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Accession:GO:0000786 term browser browse the term
Definition:A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Synonyms:narrow_synonym: cytoplasmic nucleosome;   nuclear nucleosome
 alt_id: GO:0000787;   GO:0000788;   GO:0005718
 xref: Wikipedia:Nucleosome


show annotations for term's descendants           Sort by:
nucleosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040686.1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr  X:100,270,675...100,270,878 JBrowse link
G AABR07044065.1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr19:50,114,362...50,114,880 JBrowse link
G Actb actin, beta part_of IEA
ISO		 GO_REF:0000107
(PMID:27153538)		 Ensembl
RGD		 PMID:27153538 GO_REF:0000107 NCBI chr12:16,776,664...16,779,634
Ensembl chr12:11,663,109...11,672,877 		JBrowse link
G Actl6a actin-like 6A part_of ISO
IEA		 (PMID:27153538)
GO_REF:0000107		 RGD
Ensembl		 PMID:27153538 GO_REF:0000107 NCBI chr 2:117,413,206...117,436,758
Ensembl chr 2:115,492,285...115,508,401 		JBrowse link
G Brd8 bromodomain containing 8 part_of ISO
IEA		 (PMID:27153538)
GO_REF:0000107		 RGD
Ensembl		 PMID:27153538 GO_REF:0000107 NCBI chr18:26,455,824...26,504,106
Ensembl chr18:26,181,732...26,229,884 		JBrowse link
G Cenpa centromere protein A part_of ISO
IEA		 (PMID:27499292)
GO_REF:0000107
GO_REF:0000002		 RGD
Ensembl
InterPro		 PMID:27499292 GO_REF:0000002 GO_REF:0000107 NCBI chr 6:31,420,062...31,431,703
Ensembl chr 6:25,700,142...25,711,675 		JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 part_of ISO
IEA		 (PMID:27153538)
GO_REF:0000107		 RGD
Ensembl		 PMID:27153538 GO_REF:0000107 NCBI chr 5:136,380,211...136,388,229
Ensembl chr 5:131,143,729...131,151,742 		JBrowse link
G ENSRNOG00000062927 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000002
GO_REF:0000043		 GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 Ensembl chr 2:183,779,559...183,809,469 JBrowse link
G ENSRNOG00000064540 part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 Ensembl chr17:42,750,594...42,753,070 JBrowse link
G ENSRNOG00000066901 part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 Ensembl chr17:42,425,861...42,486,187 JBrowse link
G ENSRNOG00000068034 part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 Ensembl chr17:42,760,219...42,793,359 JBrowse link
G ENSRNOG00000068602 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000002
GO_REF:0000043		 GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 Ensembl chr17:42,718,263...42,722,997 JBrowse link
G ENSRNOG00000070346 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr17:42,800,827...42,801,750 JBrowse link
G Ep400 E1A binding protein p400 part_of ISO
IEA		 (PMID:27153538)
GO_REF:0000107		 RGD
Ensembl		 PMID:27153538 GO_REF:0000107 NCBI chr12:51,551,665...51,658,635
Ensembl chr12:45,891,916...45,998,861 		JBrowse link
G Epc1 enhancer of polycomb homolog 1 part_of ISO (PMID:27153538) RGD PMID:27153538 NCBI chr17:59,198,513...59,289,535
Ensembl chr17:54,503,358...54,594,425 		JBrowse link
G Epc2 enhancer of polycomb homolog 2 part_of ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 3:54,276,187...54,376,373
Ensembl chr 3:33,867,219...33,967,150 		JBrowse link
G Glyr1 glyoxylate reductase 1 homolog part_of ISO
IEA
ISS		 (PMID:23260659)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:23260659 GO_REF:0000024 GO_REF:0000107 NCBI chr10:11,038,577...11,074,093
Ensembl chr10:10,532,154...10,567,637 		JBrowse link
G H1f0 H1.0 linker histone part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:112,473,280...112,475,140
Ensembl chr 7:110,592,208...110,594,694 		JBrowse link
G H1f1 H1.1 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,762,278...41,794,876
Ensembl chr17:41,366,268...41,367,011 		JBrowse link
G H1f10 H1.10 linker histone part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:121,997,834...121,998,897
Ensembl chr 4:120,440,870...120,441,448 		JBrowse link
G H1f2 H1.2 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,818,962...41,820,453
Ensembl chr17:41,388,477...41,392,635 		JBrowse link
G H1f4 H1.4 linker histone, cluster member part_of IDA
IEA		 PMID:9109385
GO_REF:0000002		 InterPro PMID:9109385 GO_REF:0000002, RGD:12793017 NCBI chr17:41,914,425...41,915,206
Ensembl chr17:41,486,560...41,487,403 		JBrowse link
G H1f5 H1.5 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:47,421,875...47,422,905
Ensembl chr17:42,726,127...42,769,160 		JBrowse link
G H1f6 H1.6 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,855,216...41,855,960
Ensembl chr17:41,427,323...41,428,119 		JBrowse link
G H1f8 H1.8 linker histone part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:150,665,727...150,670,846
Ensembl chr 4:148,993,133...148,998,254 		JBrowse link
G H2ab3 H2A.B variant histone 3 part_of ISO
IEA
IBA		 (PMID:22795134)
GO_REF:0000043
GO_REF:0000002
GO_REF:0000033		 RGD
UniProt
InterPro
GO_Central		 PMID:22795134 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr  X:86,566,994...86,567,568
Ensembl chr  X:82,362,633...82,362,983 		JBrowse link
G H2ac1 H2A clustered histone 1 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr17:41,599,195...41,599,672
Ensembl chr17:41,135,489...41,172,022 		JBrowse link
G H2ac10 H2A clustered histone 10 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000002
GO_REF:0000043		 GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr17:41,998,567...41,999,055
Ensembl chr17:41,570,273...41,571,049 		JBrowse link
G H2ac12 H2A clustered histone 12 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr17:47,182,193...47,182,658
Ensembl chr17:42,486,415...42,486,941 		JBrowse link
G H2ac18 H2A clustered histone 18 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr 2:186,497,271...186,497,865 JBrowse link
G H2ac20 H2A clustered histone 20 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000002
GO_REF:0000043		 GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr 2:186,468,748...186,469,226 JBrowse link
G H2ac21 H2A clustered histone 21 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr 2:186,468,224...186,468,657 JBrowse link
G H2ac23 H2A clustered histone 23 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr17:41,960,723...41,961,309
Ensembl chr17:42,478,860...42,479,252
Ensembl chr17:42,478,860...42,479,252 		JBrowse link
G H2ac25 H2A clustered histone 25 part_of ISO
IEA
IBA		 (PMID:22334663)
GO_REF:0000043
GO_REF:0000002
GO_REF:0000033		 RGD
UniProt
InterPro
GO_Central		 PMID:22334663 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr10:44,233,283...44,234,835
Ensembl chr10:43,733,668...43,744,874 		JBrowse link
G H2ac4 H2A clustered histone 4 part_of IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002
(PMID:20498094), (PMID:21812398), (PMID:26694698)		 GO_Central
UniProt
InterPro
RGD		 PMID:20498094 PMID:21812398 PMID:26694698 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr17:47,495,624...47,496,127
Ensembl chr17:42,799,652...42,800,381 		JBrowse link
G H2aj H2A.J histone part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000002
GO_REF:0000043		 GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr 4:171,406,922...171,407,406
Ensembl chr 4:169,675,752...169,677,006 		JBrowse link
G H2ax H2A.X variant histone part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr 8:53,568,718...53,570,072
Ensembl chr 8:44,671,786...44,673,239
Ensembl chr 4:44,671,786...44,673,239 		JBrowse link
G H2az1 H2A.Z variant histone 1 part_of IEA
ISO
IBA		 GO_REF:0000043
GO_REF:0000002
(PMID:24311584)
GO_REF:0000033		 UniProt
InterPro
RGD
GO_Central		 PMID:24311584 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr 2:229,026,464...229,031,411
Ensembl chr 2:226,355,708...226,358,485 		JBrowse link
G H2az1-ps2 H2A.Z variant histone 1, pseudogene 2 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr 6:12,116,545...12,116,943
Ensembl chr 6:6,362,988...6,363,359 		JBrowse link
G H2az2 H2A.Z variant histone 2 part_of IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002
(PMID:24311584)		 GO_Central
UniProt
InterPro
RGD		 PMID:24311584 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr14:85,507,228...85,526,166
Ensembl chr14:81,293,299...81,312,144
Ensembl chr 4:81,293,299...81,312,144
Ensembl chr16:81,293,299...81,312,144 		JBrowse link
G H2az2l1 H2A.Z histone variant 2 like 1 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000002
GO_REF:0000043		 GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr 4:152,825,302...152,825,956
Ensembl chr 4:151,153,132...151,153,518 		JBrowse link
G H2az2l2 H2A.Z histone variant 2 like 2 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000002
GO_REF:0000043		 GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr 6:90,058,040...90,058,522
Ensembl chr 6:84,321,903...84,322,289 		JBrowse link
G H2az2l3 H2A.Z histone variant 2 like 3 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000002
GO_REF:0000043		 GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr18:82,884,679...82,885,311
Ensembl chr18:80,609,861...80,610,556 		JBrowse link
G H2bc1 H2B clustered histone 1 part_of ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000043
GO_REF:0000002
(PMID:17261847), (PMID:23884607), (PMID:28366643)
GO_REF:0000107
(PMID:24699735)		 UniProt
InterPro
RGD
Ensembl		 PMID:17261847 PMID:23884607 PMID:24699735 PMID:28366643 GO_REF:0000002 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 NCBI chr17:41,599,912...41,600,381
Ensembl chr17:41,171,903...41,176,782
Ensembl chr17:41,171,903...41,176,782 		JBrowse link
G H2bc12 H2B clustered histone 12 part_of IEA GO_REF:0000002
GO_REF:0000043		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:47,181,477...47,181,940 JBrowse link
G H2bc12l1 H2B clustered histone 12 like 1 part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:41,990,575...41,991,020
Ensembl chr17:41,562,508...41,562,963 		JBrowse link
G H2bc18 H2B clustered histone 18 part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 2:186,527,197...186,531,634
Ensembl chr 2:183,838,334...183,841,529 		JBrowse link
G H2bc3 H2B clustered histone 3 part_of IEA GO_REF:0000002
GO_REF:0000043		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:41,807,913...41,808,543 JBrowse link
G H2bc6 H2B clustered histone 6 part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:41,948,813...41,949,276 JBrowse link
G H2bc8 H2B clustered histone 8 part_of IEA GO_REF:0000002
GO_REF:0000043		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:47,404,405...47,405,155 JBrowse link
G H2bcl1 H2B clustered histone like 1 part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:47,448,213...47,448,683
Ensembl chr17:41,571,210...41,571,896
Ensembl chr17:41,571,210...41,571,896
Ensembl chr17:41,571,210...41,571,896 		JBrowse link
G H2bcl2 H2B clustered histone like 2 part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:41,962,086...41,962,516 JBrowse link
G H2bl1 H2B.L histone variant 1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:32,121,294...32,121,769
Ensembl chr 2:30,386,982...30,387,633 		JBrowse link
G H2bu1 H2B.U histone 1 part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr10:44,232,318...44,233,065
Ensembl chr10:43,732,864...43,736,277 		JBrowse link
G H3c1 H3 clustered histone 1 part_of IEA
ISO		 GO_REF:0000043
GO_REF:0000002
(PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:21812398), (PMID:24311584), (PMID:24699735), (PMID:25615412), (PMID:30867594)		 UniProt
InterPro
RGD		 PMID:14718166 PMID:20498094 PMID:21636898 PMID:21812398 PMID:24311584 More... GO_REF:0000002 GO_REF:0000043 NCBI chr17:41,796,236...41,796,759
Ensembl chr17:41,368,386...41,368,856
Ensembl chr17:41,368,386...41,368,856
Ensembl chr17:41,368,386...41,368,856
Ensembl chr17:41,368,386...41,368,856 		JBrowse link
G H3c13 H3 clustered histone 13 part_of ISO
IEA		 (PMID:21636898), (PMID:25615412), (PMID:26694698)
GO_REF:0000002
GO_REF:0000043		 RGD
InterPro
UniProt		 PMID:21636898 PMID:25615412 PMID:26694698 GO_REF:0000002 GO_REF:0000043 NCBI chr17:41,959,540...41,960,009
Ensembl chr 2:183,795,504...183,809,469
Ensembl chr17:183,795,504...183,809,469
Ensembl chr 2:183,795,504...183,809,469
Ensembl chr17:183,795,504...183,809,469
Ensembl chr17:183,795,504...183,809,469
Ensembl chr 2:183,795,504...183,809,469 		JBrowse link
G H3cl H3 clustered histone like part_of ISO (PMID:20819935), (PMID:27016736) RGD PMID:20819935 PMID:27016736
G H3f3a H3.3 histone A part_of ISO
IEA		 (PMID:14718166), (PMID:19633671), (PMID:21636898), (PMID:25615412)
GO_REF:0000002
GO_REF:0000043		 RGD
InterPro
UniProt		 PMID:14718166 PMID:19633671 PMID:21636898 PMID:25615412 GO_REF:0000002 GO_REF:0000043 NCBI chr13:95,065,085...95,076,695
Ensembl chr13:92,533,298...92,544,908 		JBrowse link
G H3f3a-ps3 H3.3 histone A, pseudogene 3 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:17,173,986...17,174,742
Ensembl chr 6:11,421,375...11,422,460
Ensembl chr 6:11,421,375...11,422,460 		JBrowse link
G H3f3a-ps9 H3.3 histone A, pseudogene 9 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:66,110,136...66,110,968
Ensembl chr11:52,647,167...52,648,022 		JBrowse link
G H3f3al3 H3.3 histone A like 3 part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 9:49,989,995...49,990,754
Ensembl chr 9:42,494,353...42,494,763 		JBrowse link
G H3f3b H3.3 histone B part_of ISO
IEA		 (PMID:14718166), (PMID:19633671), (PMID:21636898), (PMID:25615412)
GO_REF:0000002
GO_REF:0000043		 RGD
InterPro
UniProt		 PMID:14718166 PMID:19633671 PMID:21636898 PMID:25615412 GO_REF:0000002 GO_REF:0000043 NCBI chr10:101,755,404...101,764,616
Ensembl chr10:101,256,480...101,258,709
Ensembl chr13:101,256,480...101,258,709 		JBrowse link
G H3f3bl1 H3.3 histone B like 1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:105,027,112...105,041,578
Ensembl chr13:102,496,461...102,508,842 		JBrowse link
G H3f3bl2 H3.3 histone B like 2 part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 1:216,379,541...216,380,335
Ensembl chr 1:206,954,655...206,955,444 		JBrowse link
G H3f3c H3 histone, family 3C part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 7:88,390,848...88,391,887
Ensembl chr 7:86,501,071...86,502,140 		JBrowse link
G H3f3l1 H3.3 histone like 1 part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 6:63,827,248...63,828,885
Ensembl chr 7:86,501,071...86,502,140 		JBrowse link
G H3f4 H3.4 histone, cluster member part_of ISO (PMID:20498094), (PMID:25615412)
(PMID:28099840)		 RGD PMID:20498094 PMID:25615412 PMID:28099840 NCBI chr10:44,240,282...44,240,842 JBrowse link
G H4c14 H4 clustered histone 14 part_of ISO
IEA		 (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:21812398), (PMID:24311584), (PMID:24699735), (PMID:25615412), (PMID:26694698)
GO_REF:0000043
GO_REF:0000002		 RGD
UniProt
InterPro		 PMID:14718166 PMID:20498094 PMID:21636898 PMID:21812398 PMID:24311584 More... GO_REF:0000002 GO_REF:0000043 NCBI chr 2:186,520,468...186,520,863
Ensembl chr 2:183,825,994...183,832,048 		JBrowse link
G H4cl1 histone H4C like 1 part_of ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:21812398), (PMID:24311584), (PMID:24699735), (PMID:25615412), (PMID:26694698) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:21812398 PMID:24311584 More... NCBI chr17:41,796,600...41,860,389 JBrowse link
G H4f3 H1.3 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,979,562...41,980,341
Ensembl chr17:41,529,667...41,552,334 		JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 part_of ISO
IEA		 (PMID:12920187)
GO_REF:0000002		 RGD
InterPro		 PMID:12920187 GO_REF:0000002 NCBI chr10:80,410,361...80,411,157
Ensembl chr10:79,913,480...79,914,321 		JBrowse link
G Hist1h2ac histone cluster 1 H2A family member C part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr17:47,174,615...47,175,085
Ensembl chr17:42,478,860...42,479,252
Ensembl chr17:42,478,860...42,479,252 		JBrowse link
G Hist1h2af histone cluster 1 H2A family member F part_of IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000002
GO_REF:0000043
(PMID:20498094), (PMID:21812398), (PMID:26694698)		 GO_Central
InterPro
UniProt
RGD		 PMID:20498094 PMID:21812398 PMID:26694698 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr17:41,807,261...41,807,653
Ensembl chr17:41,379,404...41,379,796 		JBrowse link
G Hist1h2ah histone cluster 1 H2A family member H part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr17:41,812,378...41,812,875 JBrowse link
G Hist1h2ai histone cluster 1, H2ai part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr17:47,414,053...47,414,540
Ensembl chr17:41,534,691...41,539,869
Ensembl chr17:41,534,691...41,539,869 		JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 part_of IEA
ISO		 GO_REF:0000043
GO_REF:0000002
(PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:21812398), (PMID:24311584), (PMID:24699735), (PMID:25615412), (PMID:30867594)		 UniProt
InterPro
RGD		 PMID:14718166 PMID:20498094 PMID:21636898 PMID:21812398 PMID:24311584 More... GO_REF:0000002 GO_REF:0000043 NCBI chr17:41,996,216...41,997,128
Ensembl chr17:41,568,471...41,569,109 		JBrowse link
G Hist1h2ail2 histone cluster 1, H2ai like 2 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr17:47,448,902...47,449,362
Ensembl chr17:41,534,691...41,539,869
Ensembl chr17:41,534,691...41,539,869 		JBrowse link
G Hist1h2al1 histone cluster 1 H2A family like 1 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr17:47,403,701...47,404,167 JBrowse link
G Hist1h2an histone cluster 1, H2an part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr17:41,961,533...41,963,297
Ensembl chr17:41,534,691...41,539,869 		JBrowse link
G Hist1h2anl2 histone cluster 1, H2an like 2 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr17:47,392,512...47,393,171
Ensembl chr17:42,696,791...42,697,295 		JBrowse link
G Hist1h2ao histone cluster 1, H2ao part_of IEA GO_REF:0000002
GO_REF:0000043		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:47,400,488...47,400,878
Ensembl chr17:42,698,025...42,698,958
Ensembl chr17:42,698,025...42,698,958
Ensembl chr17:42,698,025...42,698,958
Ensembl chr17:42,698,025...42,698,958
Ensembl chr17:42,698,025...42,698,958
Ensembl chr17:42,698,025...42,698,958
Ensembl chr17:42,698,025...42,698,958
Ensembl chr 2:42,698,025...42,698,958
Ensembl chr 4:42,698,025...42,698,958 		JBrowse link
G Hist1h2bc histone cluster 1, H2bc part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:47,388,085...47,392,349
Ensembl chr17:42,694,723...42,696,642 		JBrowse link
G Hist1h2bg histone cluster 1, H2bg part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:41,999,269...42,000,237
Ensembl chr17:41,571,210...41,571,896 		JBrowse link
G Hist1h2bo histone cluster 1 H2B family member O part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:47,412,176...47,413,789
Ensembl chr17:42,673,067...42,718,095
Ensembl chr17:42,673,067...42,718,095 		JBrowse link
G Hist1h2bq histone cluster 1 H2B family member Q part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:41,859,955...41,869,889
Ensembl chr17:41,429,164...41,442,153
Ensembl chr17:41,429,164...41,442,153
Ensembl chr17:41,429,164...41,442,153 		JBrowse link
G Hist1h3b histone cluster 1, H3b part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:47,419,196...47,419,668
Ensembl chr17:42,723,450...42,723,911 		JBrowse link
G Hist1h4b histone cluster 1 H4 family member B part_of ISO
IEA		 (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:21812398), (PMID:24311584), (PMID:24699735), (PMID:25615412), (PMID:26694698)
GO_REF:0000043
GO_REF:0000002		 RGD
UniProt
InterPro		 PMID:14718166 PMID:20498094 PMID:21636898 PMID:21812398 PMID:24311584 More... GO_REF:0000002 GO_REF:0000043 NCBI chr17:47,176,246...47,180,690
Ensembl chr17:42,480,313...42,485,370 		JBrowse link
G Hist1h4m histone cluster 1, H4m part_of ISO
IEA		 (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:21812398), (PMID:24311584), (PMID:24699735), (PMID:25615412), (PMID:26694698)
GO_REF:0000043
GO_REF:0000002		 RGD
UniProt
InterPro		 PMID:14718166 PMID:20498094 PMID:21636898 PMID:21812398 PMID:24311584 More... GO_REF:0000002 GO_REF:0000043 NCBI chr17:47,393,764...47,394,168
Ensembl chr17:42,698,025...42,698,958 		JBrowse link
G Hist2h2aa2 histone cluster 2 H2A family member A2 part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr 2:186,490,181...186,490,764 JBrowse link
G Hist2h2be histone cluster 2 H2B family member E part_of ISO
IEA		 (PMID:20498094), (PMID:21812398), (PMID:24311584), (PMID:26694698)
GO_REF:0000043
GO_REF:0000002		 RGD
UniProt
InterPro		 PMID:20498094 PMID:21812398 PMID:24311584 PMID:26694698 GO_REF:0000002 GO_REF:0000043 NCBI chr 2:186,469,452...186,471,899 JBrowse link
G Hist2h3c2 histone cluster 2 H3 family member C2 part_of ISO
IEA		 (PMID:21636898), (PMID:25615412), (PMID:26694698)
GO_REF:0000002
GO_REF:0000043		 RGD
InterPro
UniProt		 PMID:21636898 PMID:25615412 PMID:26694698 GO_REF:0000002 GO_REF:0000043 NCBI chr 2:186,526,162...186,526,587
Ensembl chr 2:183,837,303...183,837,752 		JBrowse link
G Hist3h2ba histone cluster 3, H2ba part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr10:44,225,421...44,226,050
Ensembl chr10:43,724,930...43,727,107 		JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:155,719,109...155,746,329
Ensembl chr 5:150,433,740...150,463,000 		JBrowse link
G Ing3 inhibitor of growth family, member 3 part_of ISO
IEA		 (PMID:27153538)
GO_REF:0000107		 RGD
Ensembl		 PMID:27153538 GO_REF:0000107 NCBI chr 4:51,439,218...51,469,502
Ensembl chr 4:50,477,962...50,503,715 		JBrowse link
G Irf4 interferon regulatory factor 4 part_of ISO
IEA		 (PMID:16428437)
GO_REF:0000107		 RGD
Ensembl		 PMID:16428437 GO_REF:0000107 NCBI chr17:33,930,460...33,948,842
Ensembl chr17:33,721,811...33,740,070 		JBrowse link
G Kat5 lysine acetyltransferase 5 part_of IEA
ISO		 GO_REF:0000107
(PMID:27153538)		 Ensembl
RGD		 PMID:27153538 GO_REF:0000107 NCBI chr 1:212,325,089...212,332,640
Ensembl chr 1:202,895,751...202,903,458 		JBrowse link
G Kat6a lysine acetyltransferase 6A part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:75,787,411...75,868,584
Ensembl chr16:69,084,914...69,163,606 		JBrowse link
G Kat6b lysine acetyltransferase 6B part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:2,688,535...2,861,443
Ensembl chr15:2,639,200...2,812,316 		JBrowse link
G Kdm1b lysine demethylase 1B part_of ISO
IEA		 (PMID:23260659)
GO_REF:0000107		 RGD
Ensembl		 PMID:23260659 GO_REF:0000107 NCBI chr17:17,809,232...17,850,141
Ensembl chr17:17,602,961...17,643,800 		JBrowse link
G LOC120097727 uncharacterized LOC120097727 part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:41,970,253...41,977,426 JBrowse link
G LOC125610325 histone H4 part_of IEA GO_REF:0000002
GO_REF:0000043		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043
G Macroh2a1 macroH2A.1 histone part_of IDA
IEA
IBA		 GO_REF:0000002
GO_REF:0000033
GO_REF:0000043
GO_REF:0000104		 InterPro
GO_Central
UniProt
RGD		 PMID:1529340 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 GO_REF:0000104, RGD:728409 NCBI chr17:8,484,340...8,547,268
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Macroh2a2 macroH2A.2 histone part_of IBA
IEA		 GO_REF:0000033
GO_REF:0000002
GO_REF:0000104
GO_REF:0000043		 GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 GO_REF:0000104 NCBI chr20:30,220,975...30,270,652
Ensembl chr20:29,678,222...29,727,891 		JBrowse link
G Mbtd1 mbt domain containing 1 part_of ISO
IEA		 (PMID:27153538)
GO_REF:0000107		 RGD
Ensembl		 PMID:27153538 GO_REF:0000107 NCBI chr10:79,336,041...79,392,315
Ensembl chr10:78,839,036...78,893,720 		JBrowse link
G Meaf6 MYST/Esa1-associated factor 6 part_of ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 5:142,628,281...142,653,076
Ensembl chr 5:137,344,380...137,370,014 		JBrowse link
G Morf4l1 mortality factor 4 like 1 part_of ISO
IEA		 (PMID:27153538)
GO_REF:0000107		 RGD
Ensembl		 PMID:27153538 GO_REF:0000107 NCBI chr 8:99,522,801...99,544,432
Ensembl chr 8:90,642,988...90,664,519 		JBrowse link
G Morf4l2 mortality factor 4 like 2 part_of ISO (PMID:27153538) RGD PMID:27153538 NCBI chr  X:104,874,850...104,885,946
Ensembl chr  X:100,082,404...100,093,728 		JBrowse link
G Mphosph8 M-phase phosphoprotein 8 part_of ISO
ISS		 (PMID:20871592)
GO_REF:0000024		 RGD
UniProt		 PMID:20871592 GO_REF:0000024 NCBI chr15:34,916,169...34,944,038
Ensembl chr15:30,686,613...30,828,810 		JBrowse link
G Mrgbp MRG domain binding protein part_of ISO
IEA		 (PMID:27153538)
GO_REF:0000107		 RGD
Ensembl		 PMID:27153538 GO_REF:0000107 NCBI chr 3:188,074,695...188,078,162
Ensembl chr 3:167,697,185...167,700,592 		JBrowse link
G Prm1 protamine 1 part_of IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr10:5,378,740...5,379,235 JBrowse link
G Prm2 protamine 2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:5,383,208...5,383,949
Ensembl chr10:4,873,372...4,877,026 		JBrowse link
G Prm3 protamine 3 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:5,384,394...5,384,908
Ensembl chr10:4,877,471...4,877,985 		JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 part_of ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 4:122,489,754...122,524,666
Ensembl chr 4:120,932,417...121,029,384 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 part_of ISO
IEA		 (PMID:27153538)
GO_REF:0000107		 RGD
Ensembl		 PMID:27153538 GO_REF:0000107 NCBI chr 1:105,038,487...105,051,851
Ensembl chr 1:95,901,701...95,915,342 		JBrowse link
G Shprh SNF2 histone linker PHD RING helicase part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:7,349,073...7,422,804
Ensembl chr 1:5,528,888...5,602,527 		JBrowse link
G Slf1 SMC5-SMC6 complex localization factor 1 part_of ISO (PMID:15632077) RGD PMID:15632077 NCBI chr 2:8,498,776...8,606,251
Ensembl chr 2:6,767,015...6,867,149 		JBrowse link
G Sphk2 sphingosine kinase 2 part_of ISO
IEA		 (PMID:19729656)
GO_REF:0000107		 RGD
Ensembl		 PMID:19729656 GO_REF:0000107 NCBI chr 1:105,317,332...105,324,985
Ensembl chr 1:96,180,887...96,188,391 		JBrowse link
G Tcf3 transcription factor 3 part_of ISO (PMID:16428437) RGD PMID:16428437 NCBI chr 7:9,931,251...9,952,994
Ensembl chr 7:9,280,571...9,302,314 		JBrowse link
G Tgm2 transglutaminase 2 part_of ISO (PMID:30867594), (PMID:32273471) RGD PMID:30867594 PMID:32273471 NCBI chr 3:167,192,612...167,221,845
Ensembl chr 3:146,772,687...146,801,981 		JBrowse link
G Tnp1 transition protein 1 part_of ISS
IEA
ISO
IBA		 GO_REF:0000024
GO_REF:0000107
GO_REF:0000002
(PMID:28366643)
GO_REF:0000033
GO_REF:0000043
(PMID:12743712)		 UniProt
Ensembl
InterPro
RGD
GO_Central		 PMID:12743712 PMID:28366643 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr 9:82,043,669...82,044,278
Ensembl chr 9:74,594,466...74,595,274 		JBrowse link
G Tnp2 transition protein 2 part_of ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000043
GO_REF:0000002
(PMID:28366643)		 UniProt
InterPro
RGD		 PMID:28366643 GO_REF:0000002 GO_REF:0000024 GO_REF:0000043 NCBI chr10:5,386,735...5,387,463
Ensembl chr10:4,879,812...4,880,538 		JBrowse link
G Trrap transformation/transcription domain-associated protein part_of ISO (PMID:27153538) RGD PMID:27153538 NCBI chr12:14,851,758...14,941,444
Ensembl chr12:9,738,006...9,827,674 		JBrowse link
G Vps72 vacuolar protein sorting 72 homolog part_of ISO
IEA		 (PMID:27153538)
GO_REF:0000107		 RGD
Ensembl		 PMID:27153538 GO_REF:0000107 NCBI chr 2:185,367,329...185,379,199
Ensembl chr 2:182,678,609...182,690,182 		JBrowse link
G Yeats4 YEATS domain containing 4 part_of ISO
IEA		 (PMID:27153538)
GO_REF:0000107		 RGD
Ensembl		 PMID:27153538 GO_REF:0000107 NCBI chr 7:54,744,220...54,751,361
Ensembl chr 7:52,858,305...52,865,635 		JBrowse link
CENP-A containing nucleosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpa centromere protein A part_of ISO
IEA		 (PMID:18195732), (PMID:21743476)
GO_REF:0000107		 RGD
Ensembl		 PMID:18195732 PMID:21743476 GO_REF:0000107 NCBI chr 6:31,420,062...31,431,703
Ensembl chr 6:25,700,142...25,711,675 		JBrowse link
G H2ac4 H2A clustered histone 4 part_of ISO (PMID:21743476) RGD PMID:21743476 NCBI chr17:47,495,624...47,496,127
Ensembl chr17:42,799,652...42,800,381 		JBrowse link
G H4c14 H4 clustered histone 14 part_of ISO (PMID:21743476) RGD PMID:21743476 NCBI chr 2:186,520,468...186,520,863
Ensembl chr 2:183,825,994...183,832,048 		JBrowse link
G H4cl1 histone H4C like 1 part_of ISO (PMID:21743476) RGD PMID:21743476 NCBI chr17:41,796,600...41,860,389 JBrowse link
G Hist1h2af histone cluster 1 H2A family member F part_of ISO (PMID:21743476) RGD PMID:21743476 NCBI chr17:41,807,261...41,807,653
Ensembl chr17:41,379,404...41,379,796 		JBrowse link
G Hist1h4b histone cluster 1 H4 family member B part_of ISO (PMID:21743476) RGD PMID:21743476 NCBI chr17:47,176,246...47,180,690
Ensembl chr17:42,480,313...42,485,370 		JBrowse link
G Hist1h4m histone cluster 1, H4m part_of ISO (PMID:21743476) RGD PMID:21743476 NCBI chr17:47,393,764...47,394,168
Ensembl chr17:42,698,025...42,698,958 		JBrowse link
G Hist2h2be histone cluster 2 H2B family member E part_of ISO (PMID:21743476) RGD PMID:21743476 NCBI chr 2:186,469,452...186,471,899 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      chromatin 843
        nucleosome 124
          CENP-A containing nucleosome 8
          histone H3-containing nucleosome 0
Path 2
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      organelle 14290
        membraneless organelle 5412
          intracellular membraneless organelle 5412
            chromosome 1423
              chromatin 843
                nucleosome 124
                  CENP-A containing nucleosome 8
                  histone H3-containing nucleosome 0
paths to the root