Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:embryonic axis specification
go back to main search page
Accession:GO:0000578 term browser browse the term
Definition:The establishment, maintenance and elaboration of a pattern along a line or a point in an embryo.
Synonyms:related_synonym: embryonic axis determination


show annotations for term's descendants           Sort by:
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (PMID:11118896) RGD PMID:11118896 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Chrdl1 chordin-like 1 involved_in ISO (PMID:11118896), (PMID:11401399) RGD PMID:11118896 PMID:11401399 NCBI chr  X:106,889,125...106,992,937
Ensembl chr  X:106,889,125...106,992,921 		JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in IDA PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:67,350,376...67,355,072
Ensembl chr  X:67,350,373...67,355,162 		JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in IEA
ISO 		GO_REF:0000107
(PMID:7586755) 		Ensembl
RGD		 PMID:7586755 GO_REF:0000107 NCBI chr14:86,828,137...87,060,682
Ensembl chr14:86,828,139...87,060,800 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		(PMID:9230313)
GO_REF:0000107 		RGD
Ensembl		 PMID:9230313 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Frat1 FRAT regulator of WNT signaling pathway 1 acts_upstream_of_or_within ISO
IEA 		(PMID:10534617)
GO_REF:0000107 		RGD
Ensembl		 PMID:10534617 GO_REF:0000107 NCBI chr 1:240,638,309...240,640,857
Ensembl chr 1:240,638,296...240,640,945 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:12121999) RGD PMID:12121999 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (PMID:10385121) RGD PMID:10385121 NCBI chr 5:133,757,598...133,810,493
Ensembl chr 5:128,520,953...128,573,730 		JBrowse link
G Wnt1 Wnt family member 1 involved_in ISO
IEA 		(PMID:2534596)
GO_REF:0000107 		RGD
Ensembl		 PMID:2534596 GO_REF:0000107 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO
IEA 		(PMID:16826533)
GO_REF:0000107 		RGD
Ensembl		 PMID:16826533 GO_REF:0000107 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO MGI:1934206 (PMID:9790191) RGD PMID:9790191 NCBI chr 8:110,924,774...110,938,545
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA 		MGI:3580390 (PMID:15870281)
GO_REF:0000107 		RGD
Ensembl		 PMID:15870281 GO_REF:0000107 NCBI chr 7:52,711,255...52,792,738
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:9054360) RGD PMID:9054360 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO
IEA 		(PMID:28839193)
GO_REF:0000107 		RGD
Ensembl		 PMID:28839193 GO_REF:0000107 NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:9207801) 		UniProt
Ensembl
RGD		 PMID:9207801 GO_REF:0000024 GO_REF:0000107 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO MGI:3044616 (PMID:14668413) RGD PMID:14668413 NCBI chr 4:104,680,734...104,846,086
Ensembl chr 4:104,680,739...104,845,287 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO 		GO_REF:0000107
(PMID:9054360) 		Ensembl
RGD		 PMID:9054360 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
neural plate axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) RGD PMID:19004860 NCBI chr 1:154,715,151...154,812,955
Ensembl chr 1:154,715,310...154,812,520 		JBrowse link
G Ptch1 patched 1 involved_in ISO
IEA 		(PMID:11517919)
GO_REF:0000107 		RGD
Ensembl		 PMID:11517919 GO_REF:0000107 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 involved_in ISO (PMID:21397848) RGD PMID:21397848 NCBI chr10:44,578,536...44,581,187
Ensembl chr10:44,577,675...44,581,077 		JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:255,871,939...255,919,222
Ensembl chr 1:255,875,887...255,915,871 		JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:21383078)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:21383078 GO_REF:0000024 GO_REF:0000107 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319 		JBrowse link
G Tdrd6 tudor domain containing 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544 		JBrowse link
G Tdrkh tudor and KH domain containing involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:182,049,175...182,071,516
Ensembl chr 2:182,049,215...182,070,755 		JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO
IEA 		MGI:3822451 (PMID:18794329)
GO_REF:0000107 		RGD
Ensembl		 PMID:18794329 GO_REF:0000107 NCBI chr13:33,221,705...33,321,400
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1857725 (PMID:11291865) RGD PMID:11291865 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO
IEA 		MGI:3612535 (PMID:16368929)
GO_REF:0000107 		RGD
Ensembl		 PMID:16368929 GO_REF:0000107 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO
IEA 		MGI:5448825 (PMID:22949634)
GO_REF:0000107 		RGD
Ensembl		 PMID:22949634 GO_REF:0000107 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857502|MGI:1857848 (PMID:11291865)
GO_REF:0000107 		RGD
Ensembl		 PMID:11291865 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:3580268 (PMID:20346937) 		GO_Central
RGD		 PMID:20346937 GO_REF:0000033 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within ISO
IEA 		MGI:5438570 (PMID:21998026)
GO_REF:0000107 		RGD
Ensembl		 PMID:21998026 GO_REF:0000107 NCBI chr 3:28,390,745...28,393,299
Ensembl chr 3:7,992,552...7,995,133 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:1857502 (PMID:11291865) RGD PMID:11291865 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2685968 (PMID:20346937) RGD PMID:20346937 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in 		ISO MGI:3614797 (PMID:20346937)
(PMID:16326386) 		RGD PMID:16326386 PMID:20346937 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO
IEA 		MGI:1858049 (PMID:9420335)
GO_REF:0000107 		RGD
Ensembl		 PMID:9420335 GO_REF:0000107 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO
IEA 		(PMID:20346937)
GO_REF:0000107 		RGD
Ensembl		 PMID:20346937 GO_REF:0000107 NCBI chr 1:190,818,397...190,823,824
Ensembl chr 1:181,388,684...181,392,593 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:4456438 (PMID:20178780)
GO_REF:0000107 		RGD
Ensembl		 PMID:20178780 GO_REF:0000107 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954
Ensembl chr17:8,431,465...8,435,348
Ensembl chr 8:8,431,465...8,435,348 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA 		UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107 		RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:62,393,177...62,395,339 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592 		JBrowse link
G Wt1 WT1 transcription factor involved_in ISS
ISO 		GO_REF:0000024
(PMID:8395349) 		UniProt
RGD		 PMID:8395349 GO_REF:0000024 NCBI chr 3:112,019,721...112,068,454
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578145 (PMID:16831833)
GO_REF:0000107 		RGD
Ensembl		 PMID:16831833 GO_REF:0000107 NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO
IEA 		MGI:2181754|MGI:97359 (PMID:10809672)
GO_REF:0000107 		RGD
Ensembl		 PMID:10809672 GO_REF:0000107 NCBI chr 1:119,428,978...119,627,626
Ensembl chr 1:119,429,265...119,627,596 		JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 involved_in ISO
IEA 		(PMID:9436979)
GO_REF:0000107 		RGD
Ensembl		 PMID:9436979 GO_REF:0000107 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad6 SMAD family member 6 involved_in ISO
IEA 		(PMID:9436979)
GO_REF:0000107 		RGD
Ensembl		 PMID:9436979 GO_REF:0000107 NCBI chr 8:73,345,457...73,414,985
Ensembl chr 8:64,450,114...64,519,763 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    multicellular organismal process 9031
      pattern specification process 502
        axis specification 105
          embryonic axis specification 47
            anterior/posterior axis specification, embryo + 20
            longitudinal axis specification 0
            neural plate axis specification 2
            oral/aboral axis specification 0
            somite rostral/caudal axis specification 14
            zygotic specification of dorsal/ventral axis 2
Path 2
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          embryo development 1381
            embryonic pattern specification 84
              embryonic axis specification 47
                anterior/posterior axis specification, embryo + 20
                longitudinal axis specification 0
                neural plate axis specification 2
                oral/aboral axis specification 0
                somite rostral/caudal axis specification 14
                zygotic specification of dorsal/ventral axis 2
paths to the root