Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:autophagosome membrane
go back to main search page
Accession:GO:0000421 term browser browse the term
Definition:The lipid bilayer surrounding an autophagosome, a double-membrane-bounded vesicle in which endogenous cellular material is sequestered.
Synonyms:exact_synonym: autophagic vacuole membrane


show annotations for term's descendants           Sort by:
autophagosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07025818.1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr16:48,598,506...48,599,444 JBrowse link
G Atg12 autophagy related 12 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:39,452,191...39,462,418 		JBrowse link
G Atg16l1 autophagy related 16-like 1 is_active_in
located_in		 ISO
IBA		 (PMID:29317426)
GO_REF:0000033
(PMID:21220506)		 RGD
GO_Central		 PMID:21220506 PMID:29317426 GO_REF:0000033 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase is_active_in
located_in		 ISO
IEA		 (PMID:34562084)
GO_REF:0000107		 RGD
Ensembl		 PMID:34562084 GO_REF:0000107 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103 		JBrowse link
G Atg9a autophagy related 9A NOT|located_in ISO
IEA		 (PMID:22456507)
GO_REF:0000044		 RGD
UniProt		 PMID:22456507 GO_REF:0000044 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:76,677,404...76,687,986 		JBrowse link
G Atp6ap2 ATPase H+ transporting accessory protein 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:12,856,708...12,883,670
Ensembl chr  X:10,183,068...10,210,918 		JBrowse link
G Chmp1a charged multivesicular body protein 1A located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr19:68,146,672...68,154,952
Ensembl chr19:51,238,160...51,246,436 		JBrowse link
G Chmp1b charged multivesicular body protein 1B located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr18:63,010,270...63,012,800 JBrowse link
G Chmp2a charged multivesicular body protein 2A located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 1:82,731,212...82,735,088
Ensembl chr 1:73,660,046...73,662,452 		JBrowse link
G Chmp2b charged multivesicular body protein 2B located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr11:16,783,971...16,810,500
Ensembl chr11:3,337,494...3,385,181 		JBrowse link
G Chmp3 charged multivesicular body protein 3 located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 4:105,134,860...105,180,862
Ensembl chr 4:103,576,515...103,623,959 		JBrowse link
G Chmp4b charged multivesicular body protein 4B located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 3:163,631,054...163,671,569
Ensembl chr 3:143,170,902...143,210,844 		JBrowse link
G Chmp4c charged multivesicular body protein 4C located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 2:93,299,152...93,336,075
Ensembl chr 2:91,388,530...91,428,668 		JBrowse link
G Chmp5 charged multivesicular body protein 5 located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 5:60,877,369...60,894,512
Ensembl chr 5:56,081,343...56,098,529 		JBrowse link
G Chmp6 charged multivesicular body protein 6 located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr10:105,690,400...105,696,070
Ensembl chr10:105,191,950...105,197,640 		JBrowse link
G Chmp7 charged multivesicular body protein 7 located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr15:51,200,759...51,215,992
Ensembl chr15:44,790,996...44,806,216 		JBrowse link
G ENSRNOG00000066153 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr10:81,068,011...81,069,397 JBrowse link
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 located_in ISO (PMID:10393803) RGD PMID:10393803 NCBI chr15:51,040,665...51,068,450
Ensembl chr15:44,630,873...44,658,706 		JBrowse link
G Gabarap GABA type A receptor-associated protein located_in
is_active_in		 ISO
IBA
IEA		 (PMID:15169837)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:15169837 GO_REF:0000033 GO_REF:0000107 NCBI chr10:55,213,465...55,216,787
Ensembl chr10:54,714,198...54,717,765 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:164,666,332...164,675,474
Ensembl chr 4:162,980,249...162,989,450 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 located_in
is_active_in		 ISO
IBA		 (PMID:15169837)
GO_REF:0000033		 RGD
GO_Central		 PMID:15169837 GO_REF:0000033 NCBI chr19:56,819,826...56,830,662
Ensembl chr19:39,910,534...39,924,628 		JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:89,246,175...89,247,132
Ensembl chr 8:89,246,195...89,247,139 		JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:55,052,756...55,053,109
Ensembl chr19:55,052,756...55,053,109 		JBrowse link
G Irgm immunity-related GTPase M is_active_in ISO (PMID:30612879) RGD PMID:30612879 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578 		JBrowse link
G Jmy junction mediating and regulatory protein, p53 cofactor located_in ISO (PMID:30420355) RGD PMID:30420355 NCBI chr 2:26,401,047...26,465,959
Ensembl chr 2:24,668,854...24,731,006 		JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:31006538)		 Ensembl
RGD		 PMID:31006538 GO_REF:0000107 NCBI chr16:83,058,131...83,082,843
Ensembl chr16:76,355,984...76,381,883 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 located_in
is_active_in		 IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
(PMID:12221139)		 Ensembl
GO_Central
RGD		 PMID:12221139 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:122,038,734...122,087,745
Ensembl chr  X:117,057,606...117,260,522 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha located_in
is_active_in		 IDA
ISO
IBA		 (PMID:21220506)
GO_REF:0000033		 RGD
GO_Central		 PMID:21220506 PMID:16420522 PMID:19337031 PMID:16300744 GO_REF:0000033, RGD:1643189, RGD:4892338, RGD:1643207 NCBI chr 3:164,243,204...164,244,850
Ensembl chr 3:143,783,024...143,784,670 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta located_in
is_active_in		 IDA
ISO
IBA		 PMID:15169837
(PMID:33499712)
GO_REF:0000033		 RGD
GO_Central		 PMID:33499712 PMID:16300744 PMID:15169837 GO_REF:0000033, RGD:1643207, RGD:8553983 NCBI chr19:66,571,631...66,582,270
Ensembl chr19:49,665,791...49,677,690
Ensembl chr16:49,665,791...49,677,690 		JBrowse link
G Prkd1 protein kinase D1 located_in ISO (PMID:22095288) RGD PMID:22095288 NCBI chr 6:73,460,640...73,774,433
Ensembl chr 6:67,725,905...68,039,042 		JBrowse link
G Rab2a RAB2A, member RAS oncogene family located_in ISO
IEA		 (PMID:28063257)
GO_REF:0000107		 RGD
Ensembl		 PMID:28063257 GO_REF:0000107 NCBI chr 5:21,676,017...21,740,035
Ensembl chr 5:21,676,129...21,739,899 		JBrowse link
G Rab2b RAB2B, member RAS oncogene family located_in ISO (PMID:28063257) RGD PMID:28063257 NCBI chr15:27,441,860...27,462,479
Ensembl chr15:24,968,803...24,989,113 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:122,019,281...122,068,067
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 located_in ISO (PMID:31006538) RGD PMID:31006538 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:13,161,648...13,225,560 		JBrowse link
G Rpn2 ribophorin II IDA RGD PMID:2351689 RGD:2325969 NCBI chr 3:166,361,955...166,409,272
Ensembl chr 3:145,941,839...145,989,543 		JBrowse link
G Rubcnl rubicon like autophagy enhancer located_in
is_active_in		 ISO
IBA		 (PMID:28306502)
GO_REF:0000033		 RGD
GO_Central		 PMID:28306502 GO_REF:0000033 NCBI chr15:56,741,897...56,807,086
Ensembl chr15:50,332,418...50,400,849 		JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 located_in ISO
IEA		 (PMID:17891140)
GO_REF:0000107		 RGD
Ensembl		 PMID:17891140 GO_REF:0000107 NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:233,750,838...233,784,784 		JBrowse link
G Snap29 synaptosome associated protein 29 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr11:97,082,721...97,113,195
Ensembl chr11:83,578,489...83,608,958 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:27,606,196...27,612,544
Ensembl chr18:27,332,119...27,338,335 		JBrowse link
G Stx17 syntaxin 17 located_in
is_active_in		 ISO
ISS
IBA		 (PMID:23217709), (PMID:26416964), (PMID:28306502)
GO_REF:0000024
GO_REF:0000033		 RGD
UniProt
GO_Central		 PMID:23217709 PMID:26416964 PMID:28306502 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:67,241,673...67,302,228
Ensembl chr 5:62,446,187...62,504,451 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 located_in
is_active_in		 ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:21575909), (PMID:22342342)		 UniProt
GO_Central
RGD		 PMID:21575909 PMID:22342342 GO_REF:0000024 GO_REF:0000033 NCBI chr12:10,391,587...10,420,462
Ensembl chr12:10,391,696...10,419,611 		JBrowse link
G Tex264 testis expressed 264 located_in
is_active_in		 ISO
IBA		 (PMID:31006537), (PMID:31006538)
(PMID:31006538)
GO_REF:0000033		 RGD
GO_Central		 PMID:31006537 PMID:31006538 GO_REF:0000033 NCBI chr 8:116,174,517...116,201,578
Ensembl chr 8:107,295,806...107,323,232 		JBrowse link
G Tm9sf1 transmembrane 9 superfamily member 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr15:29,127,585...29,135,334
Ensembl chr15:29,127,584...29,135,349 		JBrowse link
G Tmem150b transmembrane protein 150B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:69,124,943...69,134,617
Ensembl chr 1:69,125,710...69,141,034 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in ISO (PMID:22885598) RGD PMID:22885598 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966 		JBrowse link
G Uvrag UV radiation resistance associated located_in ISO (PMID:28306502) RGD PMID:28306502 NCBI chr 1:162,596,514...162,854,348
Ensembl chr 1:153,185,395...153,442,136 		JBrowse link
G Vmp1 vacuole membrane protein 1 located_in IDA PMID:17940279 UniProt PMID:17940279 RGD:8554414 NCBI chr10:71,903,223...72,002,337
Ensembl chr10:71,405,452...71,505,007 		JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 located_in ISO (PMID:15292400) RGD PMID:15292400 NCBI chr14:7,578,245...7,810,491
Ensembl chr14:7,606,628...7,810,482 		JBrowse link
G Wdr81 WD repeat domain 81 located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:28404643)		 UniProt
Ensembl
RGD		 PMID:28404643 GO_REF:0000024 GO_REF:0000107 NCBI chr10:60,780,268...60,793,671
Ensembl chr10:60,281,972...60,295,296 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 located_in ISO (PMID:17618624) RGD PMID:17618624 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
amphisome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp1a charged multivesicular body protein 1A located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr19:68,146,672...68,154,952
Ensembl chr19:51,238,160...51,246,436 		JBrowse link
G Chmp1b charged multivesicular body protein 1B located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr18:63,010,270...63,012,800 JBrowse link
G Chmp2a charged multivesicular body protein 2A located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 1:82,731,212...82,735,088
Ensembl chr 1:73,660,046...73,662,452 		JBrowse link
G Chmp2b charged multivesicular body protein 2B located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr11:16,783,971...16,810,500
Ensembl chr11:3,337,494...3,385,181 		JBrowse link
G Chmp3 charged multivesicular body protein 3 located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 4:105,134,860...105,180,862
Ensembl chr 4:103,576,515...103,623,959 		JBrowse link
G Chmp4b charged multivesicular body protein 4B located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 3:163,631,054...163,671,569
Ensembl chr 3:143,170,902...143,210,844 		JBrowse link
G Chmp4c charged multivesicular body protein 4C located_in IEA
ISO		 GO_REF:0000107
(PMID:17984323)		 Ensembl
RGD		 PMID:17984323 GO_REF:0000107 NCBI chr 2:93,299,152...93,336,075
Ensembl chr 2:91,388,530...91,428,668 		JBrowse link
G Chmp5 charged multivesicular body protein 5 located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 5:60,877,369...60,894,512
Ensembl chr 5:56,081,343...56,098,529 		JBrowse link
G Chmp6 charged multivesicular body protein 6 located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr10:105,690,400...105,696,070
Ensembl chr10:105,191,950...105,197,640 		JBrowse link
G Chmp7 charged multivesicular body protein 7 located_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr15:51,200,759...51,215,992
Ensembl chr15:44,790,996...44,806,216 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21322
    cellular anatomical structure 21027
      cytoplasm 12255
        vacuole 672
          autophagosome 119
            autophagosome membrane 50
              amphisome membrane 10
Path 2
Term Annotations click to browse term
  cellular_component 21322
    cellular anatomical structure 21027
      organelle 14240
        membrane-bounded organelle 12805
          intracellular membrane-bounded organelle 12253
            vacuole 672
              autophagosome 119
                autophagosome membrane 50
                  amphisome membrane 10
paths to the root