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ONTOLOGY REPORT - ANNOTATIONS

Term:phagophore assembly site
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Accession:GO:0000407 term browser browse the term
Definition:Punctate structures proximal to the endoplasmic reticulum which are the sites where the Atg machinery assembles upon autophagy induction.
Synonyms:exact_synonym: PAS
 narrow_synonym: perivacuolar space;   pre-autophagosomal structure

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phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg101 autophagy related 101 located_in IEA TreeGrafter
UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936512:9,518,128...9,525,986
Ensembl chrNW_004936512:9,518,074...9,526,961 		JBrowse link
G Atg13 autophagy related 13 located_in IEA TreeGrafter
UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936562:2,424,398...2,473,103
Ensembl chrNW_004936562:2,423,001...2,473,232 		JBrowse link
G Atg14 autophagy related 14 is_active_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:155,709...195,860
Ensembl chrNW_004936495:154,593...195,917 		JBrowse link
G Atg2a autophagy related 2A located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936599:4,417,810...4,437,639
Ensembl chrNW_004936599:4,417,900...4,437,178 		JBrowse link
G Atg2b autophagy related 2B located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936604:583,391...641,217
Ensembl chrNW_004936604:584,480...641,183 		JBrowse link
G Atg3 autophagy related 3 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936536:232,343...257,949
Ensembl chrNW_004936536:232,192...257,954 		JBrowse link
G Atg7 autophagy related 7 located_in
is_active_in 		IEA UniProt
Ensembl
TreeGrafter		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Atg9a autophagy related 9A located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936569:1,635,958...1,645,600
Ensembl chrNW_004936569:1,635,836...1,645,815 		JBrowse link
G Atg9b autophagy related 9B located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936527:6,445,824...6,453,582
Ensembl chrNW_004936527:6,446,667...6,453,511 		JBrowse link
G Bcas3 BCAS3 microtubule associated cell migration factor located_in IEA Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 NCBI chrNW_004936490:2,189,693...2,761,989
Ensembl chrNW_004936490:2,189,583...2,761,331 		JBrowse link
G Becn1 beclin 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151 		JBrowse link
G Becn2 beclin 2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936526:8,532,991...8,534,271
Ensembl chrNW_004936526:8,533,009...8,534,271 		JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:24,448,402...24,536,163
Ensembl chrNW_004936476:24,448,350...24,536,196 		JBrowse link
G Nbr1 NBR1 autophagy cargo receptor located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:17,803,074...17,832,349
Ensembl chrNW_004936490:17,803,006...17,832,945 		JBrowse link
G Phaf1 phagophore assembly factor 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:17,596,703...17,624,084
Ensembl chrNW_004936475:17,596,671...17,626,758 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936517:4,009,938...4,145,518
Ensembl chrNW_004936517:4,033,247...4,145,422 		JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 located_in
is_active_in 		IEA
ISO 		(PMID:28561066) Ensembl
UniProt		 PMID:28561066 GO_REF:0000107 NCBI chrNW_004936590:260,685...335,143
Ensembl chrNW_004936590:260,685...334,721 		JBrowse link
G Snx30 sorting nexin family member 30 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936559:684,536...792,829
Ensembl chrNW_004936559:690,397...792,835 		JBrowse link
G Snx7 sorting nexin 7 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936537:940,282...1,022,903
Ensembl chrNW_004936537:940,724...1,022,887 		JBrowse link
G Sqstm1 sequestosome 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936739:943,080...955,296
Ensembl chrNW_004936739:938,745...955,263 		JBrowse link
G Stx12 syntaxin 12 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,019,099...12,057,028
Ensembl chrNW_004936474:12,019,041...12,060,213 		JBrowse link
G Tax1bp1 Tax1 binding protein 1 located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004936478:4,305,859...4,375,785
Ensembl chrNW_004936478:4,312,536...4,374,857 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936821:1,051,247...1,162,500
Ensembl chrNW_004936821:1,051,053...1,162,735 		JBrowse link
G Ulk3 unc-51 like kinase 3 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:33,807,825...33,814,520
Ensembl chrNW_004936471:33,807,010...33,814,573 		JBrowse link
G Vmp1 vacuole membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:3,532,985...3,648,009
Ensembl chrNW_004936490:3,532,985...3,647,967 		JBrowse link
G Wdr45 WD repeat domain 45 located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936721:975,113...981,149
Ensembl chrNW_004936721:975,104...981,731 		JBrowse link
G Wdr45b WD repeat domain 45B located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936923:173,515...192,616
Ensembl chrNW_004936923:173,515...192,580 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 located_in IEA Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936541:7,782,836...7,812,142
Ensembl chrNW_004936541:7,783,322...7,812,054 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936765:909,118...946,788
Ensembl chrNW_004936765:907,877...946,822 		JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:2,304,521...2,364,472
Ensembl chrNW_004936488:2,304,438...2,364,709 		JBrowse link
extrinsic component of phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936495:155,709...195,860
Ensembl chrNW_004936495:154,593...195,917 		JBrowse link
phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936742:1,000,029...1,007,885
Ensembl chrNW_004936742:999,771...1,007,885 		JBrowse link
G Atg13 autophagy related 13 is_active_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:2,424,398...2,473,103
Ensembl chrNW_004936562:2,423,001...2,473,232 		JBrowse link
G Atg14 autophagy related 14 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:155,709...195,860
Ensembl chrNW_004936495:154,593...195,917 		JBrowse link
G Atg16l1 autophagy related 16 like 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936525:3,973,574...4,010,442
Ensembl chrNW_004936525:3,972,558...4,010,514 		JBrowse link
G Atg16l2 autophagy related 16 like 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:2,070,985...2,084,141
Ensembl chrNW_004936498:2,070,881...2,083,968 		JBrowse link
G Atg2a autophagy related 2A located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004936599:4,417,810...4,437,639
Ensembl chrNW_004936599:4,417,900...4,437,178 		JBrowse link
G Atg2b autophagy related 2B located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004936604:583,391...641,217
Ensembl chrNW_004936604:584,480...641,183 		JBrowse link
G Atg5 autophagy related 5 located_in IEA TreeGrafter
Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420 		JBrowse link
G Atg9a autophagy related 9A located_in IEA UniProt GO_REF:0000044 GO_REF:0000104 NCBI chrNW_004936569:1,635,958...1,645,600
Ensembl chrNW_004936569:1,635,836...1,645,815 		JBrowse link
G Atg9b autophagy related 9B located_in IEA UniProt GO_REF:0000044 GO_REF:0000104 NCBI chrNW_004936527:6,445,824...6,453,582
Ensembl chrNW_004936527:6,446,667...6,453,511 		JBrowse link
G LOC101976670 ubiquitin-like protein ATG12 located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936673:2,861,475...2,862,529 JBrowse link
G Rab1b RAB1B, member RAS oncogene family located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,317,258...3,324,208
Ensembl chrNW_004936599:3,317,258...3,324,213 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:8,167,567...8,183,105
Ensembl chrNW_004936535:8,167,551...8,183,111 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:297,600...304,929
Ensembl chrNW_004936798:296,066...305,176 		JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936590:260,685...335,143
Ensembl chrNW_004936590:260,685...334,721 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936821:1,051,247...1,162,500
Ensembl chrNW_004936821:1,051,053...1,162,735 		JBrowse link
G Ulk3 unc-51 like kinase 3 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:33,807,825...33,814,520
Ensembl chrNW_004936471:33,807,010...33,814,573 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:7,782,836...7,812,142
Ensembl chrNW_004936541:7,783,322...7,812,054 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936765:909,118...946,788
Ensembl chrNW_004936765:907,877...946,822 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18226
    cellular anatomical structure 18004
      phagophore assembly site 39
        phagophore assembly site membrane + 20
Path 2
Term Annotations click to browse term
  cellular_component 18226
    cellular anatomical structure 18004
      intracellular anatomical structure 14349
        cytoplasm 10331
          phagophore assembly site 39
            phagophore assembly site membrane + 20
paths to the root