ONTOLOGY REPORT - ANNOTATIONS
Term: mRNA splicing, via spliceosome
Accession: GO:0000398
browse the term
Definition: The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
Comment: Note that although the many U12-type introns have the sequence AT-AC at the intron termini, some introns with these terminal sequences are spliced by the U2-type spliceosome. The distinguishing characteristics are sequences near the 5' splice site and the branch point sequences of the intron. Note that although the majority of U2-type introns have the sequence GU-AG at the intron termini, some introns with these terminal sequences are spliced by the U12-type spliceosome. The distinguishing characteristics are sequences near the 5' splice site and the branch point sequences of the intron.
Synonyms: exact_synonym: nuclear mRNA splicing, via spliceosome
narrow_synonym: nuclear mRNA splicing via U12-type spliceosome; nuclear mRNA splicing via U2-type spliceosome
broad_synonym: mRNA splicing; pre-mRNA splicing
related_synonym: splicing AT-AC intron; splicing GT-AG intron
alt_id: GO:0006374; GO:0006375
G
AABR07037800.1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
Ensembl chr X:29,333,112...29,334,044
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AABR07042226.1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
Ensembl chr X:144,806,986...144,812,552
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AABR07048397.1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
Ensembl chr 2:246,755,907...246,757,455
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AC109707.1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
Ensembl chr14:43,128,814...43,130,403
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AC126899.1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
Ensembl chr19:40,146,975...40,147,500
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Aqr
aquarius intron-binding spliceosomal factor
involved_in
ISO
(PMID:28076346)
RGD
PMID:28076346
NCBI chr 3:100,874,987...100,945,026
Ensembl chr 3:100,874,987...100,945,044
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Bcas2
BCAS2, pre-mRNA processing factor
involved_in
ISO
(PMID:28076346)
RGD
PMID:28076346
NCBI chr 2:190,692,503...190,700,386
Ensembl chr 2:190,692,461...190,700,389
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Bud13
BUD13 homolog
involved_in
ISO IBA IEA ISS
(PMID:29360106) GO_REF:0000033 GO_REF:0000107 GO_REF:0000024
RGD GO_Central Ensembl UniProt
PMID:29360106
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 8:46,575,124...46,590,964
Ensembl chr 8:46,575,115...46,590,958
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Bud31
BUD31 homolog
involved_in
ISO IBA
(PMID:28076346) GO_REF:0000033
RGD GO_Central
PMID:28076346
GO_REF:0000033
NCBI chr12:9,462,838...9,470,387
Ensembl chr12:9,462,441...9,470,509
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C3h9orf78
similar to human chromosome 9 open reading frame 78
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:14,264,262...14,272,552
Ensembl chr 3:14,264,083...14,272,764
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Cactin
cactin, spliceosome C complex subunit
involved_in
ISO
(PMID:28062851)
RGD
PMID:28062851
NCBI chr 7:8,391,396...8,397,219
Ensembl chr 7:8,391,397...8,396,829
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Casc3
CASC3 exon junction complex subunit
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:29301961)
UniProt Ensembl RGD
PMID:29301961
GO_REF:0000024 GO_REF:0000107
NCBI chr10:83,769,014...83,788,966
Ensembl chr10:83,769,001...83,788,966
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Cdc40
cell division cycle 40
involved_in
ISO IBA
(PMID:28076346), (PMID:33220177) GO_REF:0000033
RGD GO_Central
PMID:28076346 PMID:33220177
GO_REF:0000033
NCBI chr20:44,273,080...44,325,605
Ensembl chr20:44,273,089...44,325,358
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Cdc5l
cell division cycle 5-like
involved_in
ISO IBA IEA ISS
(PMID:28076346) GO_REF:0000033 GO_REF:0000107 GO_REF:0000002 GO_REF:0000024
RGD GO_Central Ensembl InterPro UniProt
PMID:28076346
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450
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Cenatac
centrosomal AT-AC splicing factor
involved_in
ISO
(PMID:34009673)
RGD
PMID:34009673
NCBI chr 8:44,735,968...44,742,859
Ensembl chr 8:44,735,972...44,742,837
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Crnkl1
crooked neck pre-mRNA splicing factor 1
involved_in
ISO IBA IEA ISS
(PMID:28076346) GO_REF:0000033 GO_REF:0000002 GO_REF:0000024
RGD GO_Central InterPro UniProt
PMID:28076346
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033
NCBI chr 3:133,338,593...133,354,329
Ensembl chr 3:133,337,039...133,354,302 Ensembl chr 6:133,337,039...133,354,302
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Cwc15
CWC15 spliceosome-associated protein
involved_in
ISS ISO
GO_REF:0000024 (PMID:28076346)
UniProt RGD
PMID:28076346
GO_REF:0000024
NCBI chr 8:11,305,401...11,316,326
Ensembl chr 8:11,305,424...11,316,325
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Cwc22
CWC22 spliceosome associated protein
involved_in
ISO IBA
(PMID:29360106) GO_REF:0000033
RGD GO_Central
PMID:29360106
GO_REF:0000033
NCBI chr 3:62,815,230...62,864,269
Ensembl chr 3:62,802,045...62,864,228
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Cwc25
CWC25 spliceosome-associated protein homolog
involved_in
ISO IBA
(PMID:29301961) GO_REF:0000033
RGD GO_Central
PMID:29301961
GO_REF:0000033
NCBI chr10:82,735,698...82,760,373
Ensembl chr10:82,736,995...82,760,354
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Cwf19l1
CWF19 like cell cycle control factor 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:242,997,720...243,020,989
Ensembl chr 1:242,997,726...243,020,961
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Cwf19l2
CWF19 like cell cycle control factor 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:290,148...356,636
Ensembl chr 6:281,685...356,604
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Dbr1
debranching RNA lariats 1
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 (PMID:10982890)
GO_Central RGD
PMID:10982890
GO_REF:0000033
NCBI chr 8:100,139,039...100,150,768
Ensembl chr 8:100,139,034...100,151,030
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Ddx23
DEAD-box helicase 23
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:129,797,620...129,814,909
Ensembl chr 7:129,797,614...129,814,949
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Ddx39a
DExD-box helicase 39A
involved_in
ISO IBA IEA
UniProtKB:Q07478 (PMID:15047853) GO_REF:0000033 GO_REF:0000107
RGD GO_Central Ensembl
PMID:15047853
GO_REF:0000033 GO_REF:0000107
NCBI chr19:24,418,743...24,427,422
Ensembl chr19:24,418,114...24,426,954
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Ddx39b
DExD-box helicase 39B
involved_in
ISO IBA
UniProtKB:Q07478 (PMID:15047853) GO_REF:0000033
RGD GO_Central
PMID:15047853
GO_REF:0000033
NCBI chr20:3,547,702...3,585,064
Ensembl chr20:3,572,056...3,584,996
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Ddx41
DEAD-box helicase 41
involved_in
ISO IBA
(PMID:25920683) GO_REF:0000033
RGD GO_Central
PMID:25920683
GO_REF:0000033
NCBI chr17:9,102,926...9,108,415
Ensembl chr17:9,103,010...9,108,415
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Ddx41l1
DEAD-box helicase 41 like 1
involved_in
IEA IBA
GO_REF:0000002 GO_REF:0000033
InterPro GO_Central
GO_REF:0000002 GO_REF:0000033
NCBI chr 6:107,185,923...107,187,961
Ensembl chr 6:107,186,096...107,187,961
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Ddx46
DEAD-box helicase 46
involved_in
ISS IBA ISO
GO_REF:0000024 GO_REF:0000033 (PMID:32494006), (PMID:34822310), (PMID:36797247)
UniProt GO_Central RGD
PMID:32494006 PMID:34822310 PMID:36797247
GO_REF:0000024 GO_REF:0000033
NCBI chr17:8,942,070...8,988,440
Ensembl chr17:8,944,454...8,988,439
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Dhx16
DEAH-box helicase 16
involved_in
ISO
(PMID:20423332), (PMID:25296192), (PMID:29360106)
RGD
PMID:20423332 PMID:25296192 PMID:29360106
NCBI chr20:2,862,000...2,874,991
Ensembl chr20:2,862,000...2,874,948
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Dhx38
DEAH-box helicase 38
involved_in
ISO IBA
(PMID:9524131) GO_REF:0000033
RGD GO_Central
PMID:9524131
GO_REF:0000033
NCBI chr19:37,512,893...37,530,135
Ensembl chr19:37,512,891...37,530,140
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Dhx8
DEAH-box helicase 8
involved_in
ISO IBA
(PMID:28076346) GO_REF:0000033
RGD GO_Central
PMID:28076346
GO_REF:0000033
NCBI chr10:86,667,641...86,704,198
Ensembl chr10:86,667,834...86,705,137
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Eftud2
elongation factor Tu GTP binding domain containing 2
involved_in
ISO IBA
(PMID:28076346) GO_REF:0000033
RGD GO_Central
PMID:28076346
GO_REF:0000033
NCBI chr10:87,804,893...87,852,181
Ensembl chr10:87,804,892...87,846,079
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Eif4a3
eukaryotic translation initiation factor 4A3
involved_in
ISS IBA ISO
GO_REF:0000024 GO_REF:0000033 (PMID:29301961)
UniProt GO_Central RGD
PMID:29301961
GO_REF:0000024 GO_REF:0000033
NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057
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ENSRNOG00000063412
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr X:133,163,165...133,163,784
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ENSRNOG00000065450
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr18:73,476,936...73,477,748
G
ENSRNOG00000069332
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 2:89,339,501...89,339,701
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Ess2
ess-2 splicing factor homolog
involved_in
ISO
(PMID:34694367)
RGD
PMID:34694367
NCBI chr11:83,075,893...83,085,849
Ensembl chr11:83,075,925...83,084,846
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Fra10ac1
FRA10A associated CGG repeat 1
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:34694367)
UniProt Ensembl RGD
PMID:34694367
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:235,969,071...236,001,074
Ensembl chr 1:235,969,112...236,001,210
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Gcfc2
GC-rich sequence DNA-binding factor 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:114,481,613...114,519,268
Ensembl chr 4:114,481,607...114,519,962
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Gpkow
G patch domain and KOW motifs
involved_in
ISO IBA
(PMID:25296192) GO_REF:0000033
RGD GO_Central
PMID:25296192
GO_REF:0000033
NCBI chr X:14,791,601...14,806,384
Ensembl chr X:14,791,610...14,806,384
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Hars2
histidyl-tRNA synthetase 2, mitochondrial
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr18:28,398,790...28,408,075
Ensembl chr18:28,398,795...28,414,747
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Hnrnpa1
heterogeneous nuclear ribonucleoprotein A1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609
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Hnrnpa2b1
heterogeneous nuclear ribonucleoprotein A2/B1
involved_in
ISS IBA IEA ISO
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 (PMID:26321680)
UniProt GO_Central Ensembl RGD
PMID:26321680
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249
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Hnrnpa3
heterogeneous nuclear ribonucleoprotein A3
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:60,578,574...60,588,755
Ensembl chr 3:60,578,673...60,588,306
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Hnrnpc
heterogeneous nuclear ribonucleoprotein C
involved_in
ISO ISS
(PMID:25719671) GO_REF:0000024
RGD UniProt
PMID:25719671
GO_REF:0000024
NCBI chr15:24,779,593...24,809,213
Ensembl chr15:24,779,450...24,809,183
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Htatsf1
HIV-1 Tat specific factor 1
involved_in
ISO
(PMID:32494006), (PMID:34822310), (PMID:36797247)
RGD
PMID:32494006 PMID:34822310 PMID:36797247
NCBI chr X:134,935,426...134,949,607
Ensembl chr X:134,935,426...134,949,607
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Ik
IK cytokine
involved_in
ISO IBA ISS
(PMID:28781166) GO_REF:0000033 GO_REF:0000024
RGD GO_Central UniProt
PMID:28781166
GO_REF:0000024 GO_REF:0000033
NCBI chr18:28,358,004...28,372,809
Ensembl chr18:28,357,977...28,378,832
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Isy1
ISY1 splicing factor homolog
involved_in
ISO ISS
(PMID:29301961) GO_REF:0000024
RGD UniProt
PMID:29301961
GO_REF:0000024
NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188
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LOC100912568
probable ATP-dependent RNA helicase DDX41-like
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 6:107,230,038...107,231,786
Ensembl chr 6:107,226,563...107,244,212
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LOC102548514
crooked neck-like protein 1-like
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 6:1,140,615...1,142,918
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LOC120096281
heterogeneous nuclear ribonucleoprotein A3-like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr13:65,940,732...65,942,250
Ensembl chr13:65,941,100...65,942,227
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LOC134479418
pre-mRNA-splicing factor CWC22 homolog
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
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LOC134479419
pre-mRNA-splicing factor CWC22 homolog
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
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Lsm2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
involved_in
ISO IBA
(PMID:28781166) GO_REF:0000033
RGD GO_Central
PMID:28781166
GO_REF:0000033
NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266
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Lsm3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
involved_in acts_upstream_of_or_within
ISO IBA
(PMID:28781166) GO_REF:0000033 (PMID:10369684), (PMID:10523320)
RGD GO_Central
PMID:10369684 PMID:10523320 PMID:28781166
GO_REF:0000033
NCBI chr 4:124,021,023...124,027,269
Ensembl chr 4:124,021,023...124,027,269
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Lsm4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
involved_in
ISO
(PMID:28781166)
RGD
PMID:28781166
NCBI chr16:18,755,481...18,761,106
Ensembl chr16:18,755,484...18,760,926
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Lsm5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
involved_in
ISO IBA
(PMID:28781166) GO_REF:0000033
RGD GO_Central
PMID:28781166
GO_REF:0000033
NCBI chr 4:85,951,073...85,954,289
Ensembl chr 6:104,652,477...104,654,165 Ensembl chr 4:104,652,477...104,654,165
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Lsm5l1
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated like 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr16:1,339,769...1,340,198
Ensembl chr16:1,339,784...1,340,056
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Lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
involved_in
ISO IBA
(PMID:28781166) GO_REF:0000033
RGD GO_Central
PMID:28781166
GO_REF:0000033
NCBI chr19:29,098,254...29,112,858
Ensembl chr13:42,114,032...42,116,484 Ensembl chr19:42,114,032...42,116,484
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Lsm6l1
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated like 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr13:42,114,013...42,116,559
Ensembl chr13:42,114,032...42,116,484
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Lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
involved_in
ISO
(PMID:28781166)
RGD
PMID:28781166
NCBI chr 7:8,856,698...8,859,113
Ensembl chr 7:8,856,489...8,859,119
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Lsm8
LSM8 homolog, U6 small nuclear RNA associated
involved_in
ISO IBA
(PMID:28781166) GO_REF:0000033
RGD GO_Central
PMID:28781166
GO_REF:0000033
NCBI chr 4:47,306,259...47,312,125
Ensembl chr 4:47,306,295...47,314,293
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Magohb
mago homolog B, exon junction complex subunit
involved_in
ISO
(PMID:28502770)
RGD
PMID:28502770
NCBI chr 4:165,034,131...165,041,977
Ensembl chr 4:165,034,122...165,041,967
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Mettl14
methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit
involved_in
ISO
(PMID:25719671)
RGD
PMID:25719671
NCBI chr 2:211,530,598...211,546,845
Ensembl chr 2:211,530,602...211,546,821
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Mettl3
methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit
involved_in NOT|involved_in
ISO
(PMID:25719671), (PMID:26321680) (PMID:25569111) (PMID:28637692)
RGD
PMID:25569111 PMID:25719671 PMID:26321680 PMID:28637692
NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041
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Mfap1a
microfibrillar-associated protein 1A
involved_in
ISO
(PMID:28781166)
RGD
PMID:28781166
NCBI chr 3:108,440,163...108,456,744
Ensembl chr 3:108,438,845...108,456,750
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Ncbp2
nuclear cap binding protein subunit 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885
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Nhp2
NHP2 ribonucleoprotein
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr10:35,877,057...35,880,399
Ensembl chr10:35,877,054...35,882,545
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Nova1
NOVA alternative splicing regulator 1
involved_in acts_upstream_of_or_within
IEA ISO IBA
GO_REF:0000107 MGI:2386947 (PMID:10719891) GO_REF:0000033
Ensembl RGD GO_Central
PMID:10719891
GO_REF:0000033 GO_REF:0000107
NCBI chr 6:63,780,105...63,905,567
Ensembl chr 6:63,783,489...63,906,289
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Nova2
NOVA alternative splicing regulator 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:78,572,253...78,613,703
Ensembl chr 1:78,572,279...78,608,021
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Paxbp1
PAX3 and PAX7 binding protein 1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr11:30,272,037...30,301,504
Ensembl chr11:30,272,037...30,301,648
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Phf5a
PHD finger protein 5A
involved_in
ISS IBA ISO IEA
GO_REF:0000024 GO_REF:0000033 (PMID:12234937), (PMID:27720643), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) GO_REF:0000002
UniProt GO_Central RGD InterPro
PMID:12234937 PMID:27720643 PMID:29360106 PMID:32494006 PMID:34822310 PMID:36797247 More...
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033
NCBI chr 7:113,378,469...113,385,035
Ensembl chr 7:113,378,471...113,385,460
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Plrg1
pleiotropic regulator 1
involved_in
ISO IBA IEA ISS
(PMID:28076346) GO_REF:0000033 GO_REF:0000107 GO_REF:0000002 GO_REF:0000024
RGD GO_Central Ensembl InterPro UniProt
PMID:28076346
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 2:168,408,139...168,424,470
Ensembl chr 2:168,408,124...168,424,522
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Ppie
peptidylprolyl isomerase E
involved_in
ISO
(PMID:28076346)
RGD
PMID:28076346
NCBI chr 5:135,406,172...135,419,332
Ensembl chr 5:135,406,176...135,419,235
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Ppil1
peptidylprolyl isomerase like 1
involved_in
ISO IBA
(PMID:28076346), (PMID:33220177) GO_REF:0000033
RGD GO_Central
PMID:28076346 PMID:33220177
GO_REF:0000033
NCBI chr20:7,302,292...7,322,349
Ensembl chr20:7,302,621...7,322,354
G
Prpf19
pre-mRNA processing factor 19
involved_in
ISO IBA IEA ISS
(PMID:20176811) GO_REF:0000033 GO_REF:0000002 GO_REF:0000024
RGD GO_Central InterPro UniProt
PMID:20176811
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033
NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
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Prpf3
pre-mRNA processing factor 3
involved_in
ISO IBA
(PMID:28781166) GO_REF:0000033
RGD GO_Central
PMID:28781166
GO_REF:0000033
NCBI chr 2:183,379,041...183,403,526
Ensembl chr 2:183,378,718...183,403,489
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Prpf31
pre-mRNA processing factor 31
involved_in acts_upstream_of_or_within
ISO IBA
(PMID:28781166) GO_REF:0000033 (PMID:11867543)
RGD GO_Central
PMID:11867543 PMID:28781166
GO_REF:0000033
NCBI chr 1:65,575,887...65,587,561
Ensembl chr 1:65,575,887...65,587,873
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Prpf38a
pre-mRNA processing factor 38A
involved_in
ISO
(PMID:26673105), (PMID:28781166)
RGD
PMID:26673105 PMID:28781166
NCBI chr 5:123,312,461...123,324,160
Ensembl chr 5:123,311,482...123,323,972
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Prpf38b
pre-mRNA processing factor 38B
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr 2:196,553,224...196,562,271
Ensembl chr 2:196,553,225...196,562,250
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Prpf4
pre-mRNA splicing tri-snRNP complex factor 4
involved_in
ISO IBA
(PMID:28781166) GO_REF:0000033
RGD GO_Central
PMID:28781166
GO_REF:0000033
NCBI chr 5:75,859,934...75,873,924
Ensembl chr 5:75,859,924...75,873,919
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Prpf40a
pre-mRNA processing factor 40 homolog A
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:37,625,585...37,689,859
Ensembl chr 3:37,627,690...37,690,886
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Prpf40b
pre-mRNA processing factor 40 homolog B
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:130,392,611...130,454,053
Ensembl chr 7:130,432,112...130,454,052
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Prpf6
pre-mRNA processing factor 6
involved_in
ISS IBA IEA ISO
GO_REF:0000024 GO_REF:0000033 GO_REF:0000002 (PMID:21549338), (PMID:28781166)
UniProt GO_Central InterPro RGD
PMID:21549338 PMID:28781166
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033
NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991
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Prpf8
pre-mRNA processing factor 8
involved_in
ISO
(PMID:28781166), (PMID:29301961)
RGD
PMID:28781166 PMID:29301961
NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606
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Rbm10
RNA binding motif protein 10
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:1,540,399...1,572,571
Ensembl chr X:1,540,398...1,572,575
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Rbm14
RNA binding motif protein 14
involved_in
ISO IBA
(PMID:31794640) GO_REF:0000033
RGD GO_Central
PMID:31794640
GO_REF:0000033
NCBI chr 1:202,076,940...202,105,688
Ensembl chr 1:202,078,287...202,105,665
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Rbm41
RNA binding motif protein 41
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:103,605,732...103,660,381
Ensembl chr X:103,608,585...103,660,381
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Rbm44
RNA binding motif protein 44
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 9:91,731,153...91,756,783
Ensembl chr 9:91,731,115...91,756,772
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Rbm4b
RNA binding motif protein 4B
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:202,047,934...202,058,025
Ensembl chr 1:202,047,927...202,058,020
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Rbm5
RNA binding motif protein 5
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:108,420,220...108,449,481
Ensembl chr 8:108,420,222...108,449,430
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Rbm6
RNA binding motif protein 6
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:108,452,687...108,552,783
Ensembl chr 8:108,452,687...108,552,771
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Rbm8a
RNA binding motif protein 8A
involved_in
ISS ISO
GO_REF:0000024 (PMID:29301961)
UniProt RGD
PMID:29301961
GO_REF:0000024
NCBI chr 2:184,165,189...184,167,959
Ensembl chr 2:184,165,193...184,167,959
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Rbmx2
RNA binding motif protein, X-linked 2
involved_in
ISS IBA IEA ISO
GO_REF:0000024 GO_REF:0000033 GO_REF:0000002 (PMID:29360106)
UniProt GO_Central InterPro RGD
PMID:29360106
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033
NCBI chr X:127,888,514...127,896,239
Ensembl chr X:127,888,438...127,896,869
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Rnf113a1
ring finger protein 113A1
involved_in
ISO
(PMID:29360106)
RGD
PMID:29360106
NCBI chr X:116,427,941...116,429,164
Ensembl chr X:116,427,684...116,433,762
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Rnpc3
RNA-binding region (RNP1, RRM) containing 3
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 2:201,432,769...201,457,015
Ensembl chr 2:201,432,684...201,456,747
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Rnps1
RNA binding protein with serine rich domain 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:13,445,516...13,455,858
Ensembl chr10:13,445,653...13,455,858
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Rsrc1
arginine and serine rich coiled-coil 1
involved_in
ISO ISS
(PMID:15798186) GO_REF:0000024
RGD UniProt
PMID:15798186
GO_REF:0000024
NCBI chr 2:151,226,821...151,632,771
Ensembl chr 2:151,231,156...151,632,765
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Sart1
spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP
involved_in
ISO IEA
(PMID:28781166) GO_REF:0000002
RGD InterPro
PMID:28781166
GO_REF:0000002
NCBI chr 1:202,690,472...202,699,136
Ensembl chr 1:202,690,459...202,699,136
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Sart3
spliceosome associated factor 3, U4/U6 recycling protein
involved_in
ISO IBA
(PMID:15314151) GO_REF:0000033
RGD GO_Central
PMID:15314151
GO_REF:0000033
NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038
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Sf1
splicing factor 1
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr 1:203,670,016...203,683,432
Ensembl chr 1:203,670,018...203,684,330
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Sf3a1
splicing factor 3A subunit 1
involved_in
ISO
(PMID:10882114), (PMID:29360106), (PMID:32494006), (PMID:36797247)
RGD
PMID:10882114 PMID:29360106 PMID:32494006 PMID:36797247
NCBI chr14:79,031,394...79,052,144
Ensembl chr14:79,031,394...79,052,144
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Sf3a2
splicing factor 3A subunit 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247)
UniProt RGD
PMID:29360106 PMID:32494006 PMID:34822310 PMID:36797247
GO_REF:0000024
NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530
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Sf3a3
splicing factor 3a, subunit 3
involved_in
ISO IBA
(PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) GO_REF:0000033
RGD GO_Central
PMID:29360106 PMID:32494006 PMID:34822310 PMID:36797247
GO_REF:0000033
NCBI chr 5:136,967,713...136,987,345
Ensembl chr 5:136,967,691...136,987,361
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Sf3b1
splicing factor 3b, subunit 1
acts_upstream_of_or_within involved_in
ISO
(PMID:11252167) (PMID:23211737) (PMID:27720643), (PMID:28781166), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247)
RGD
PMID:11252167 PMID:23211737 PMID:27720643 PMID:28781166 PMID:29360106 PMID:32494006 PMID:34822310 PMID:36797247 More...
NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300
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Sf3b2
splicing factor 3b, subunit 2
involved_in
ISO IBA
(PMID:27720643), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) GO_REF:0000033
RGD GO_Central
PMID:27720643 PMID:29360106 PMID:32494006 PMID:34822310 PMID:36797247
GO_REF:0000033
NCBI chr 1:202,570,423...202,590,774
Ensembl chr 1:202,570,423...202,590,759
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Sf3b3
splicing factor 3b, subunit 3
involved_in
ISO IBA
(PMID:27720643), (PMID:28781166), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) GO_REF:0000033
RGD GO_Central
PMID:27720643 PMID:28781166 PMID:29360106 PMID:32494006 PMID:34822310 PMID:36797247 More...
GO_REF:0000033
NCBI chr19:38,782,749...38,820,271
Ensembl chr19:38,783,040...38,820,245
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Sf3b4
splicing factor 3B subunit 4
involved_in acts_upstream_of_or_within
IEA IBA ISO ISS
GO_REF:0000107 GO_REF:0000033 (PMID:23636947) (PMID:27720643), (PMID:29360106), (PMID:32494006), (PMID:36797247) GO_REF:0000024
Ensembl GO_Central RGD UniProt
PMID:23636947 PMID:27720643 PMID:29360106 PMID:32494006 PMID:36797247
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 2:183,732,791...183,737,545
Ensembl chr 2:183,732,754...183,737,959
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Sf3b5
splicing factor 3b, subunit 5
involved_in
ISO IBA
(PMID:27720643), (PMID:28781166), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) GO_REF:0000033
RGD GO_Central
PMID:27720643 PMID:28781166 PMID:29360106 PMID:32494006 PMID:34822310 PMID:36797247 More...
GO_REF:0000033
NCBI chr 1:7,357,040...7,357,752
Ensembl chr 1:7,350,731...7,357,839
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Sf3b6
splicing factor 3B, subunit 6
involved_in acts_upstream_of_or_within
ISO IBA
(PMID:27720643), (PMID:32494006), (PMID:34822310) GO_REF:0000033 (PMID:23211737)
RGD GO_Central
PMID:23211737 PMID:27720643 PMID:32494006 PMID:34822310
GO_REF:0000033
NCBI chr 6:27,826,044...27,835,086
Ensembl chr 6:27,826,029...27,835,156
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Slu7
SLU7 homolog, splicing factor
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349
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Smu1
SMU1, DNA replication regulator and spliceosomal factor
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000002 GO_REF:0000107 (PMID:28781166)
UniProt InterPro Ensembl RGD
PMID:28781166
GO_REF:0000002 GO_REF:0000024 GO_REF:0000107
NCBI chr 5:55,856,691...55,875,262
Ensembl chr 5:55,856,246...55,875,300
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Snip1
Smad nuclear interacting protein 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:29360106)
UniProt RGD
PMID:29360106
GO_REF:0000024
NCBI chr 5:137,328,371...137,335,846
Ensembl chr 5:137,328,371...137,335,845
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Snrnp200
small nuclear ribonucleoprotein U5 subunit 200
involved_in
ISS ISO
GO_REF:0000024 (PMID:29301961), (PMID:8670905)
UniProt RGD
PMID:8670905 PMID:29301961
GO_REF:0000024
NCBI chr 3:114,428,854...114,458,194
Ensembl chr 3:114,428,854...114,458,182
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Snrnp25
small nuclear ribonucleoprotein U11/U12 subunit 25
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr10:15,420,482...15,423,806
Ensembl chr10:15,420,486...15,423,804
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Snrnp35
small nuclear ribonucleoprotein U11/U12 subunit 35
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr12:32,112,032...32,119,829
Ensembl chr12:32,110,993...32,122,660
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Snrnp70
small nuclear ribonucleoprotein U1 subunit 70
involved_in
ISO IBA ISS
(PMID:9531537) GO_REF:0000033 GO_REF:0000024
RGD GO_Central UniProt
PMID:9531537
GO_REF:0000024 GO_REF:0000033
NCBI chr 1:95,856,038...95,876,434
Ensembl chr 1:95,856,036...95,876,392
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Snrpa
small nuclear ribonucleoprotein polypeptide A
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:82,481,770...82,490,540
Ensembl chr 1:82,481,770...82,490,538
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Snrpa1
small nuclear ribonucleoprotein polypeptide A'
involved_in
ISO IBA
(PMID:28076346), (PMID:28781166), (PMID:32494006), (PMID:36797247) GO_REF:0000033
RGD GO_Central
PMID:28076346 PMID:28781166 PMID:32494006 PMID:36797247
GO_REF:0000033
NCBI chr 1:119,641,402...119,654,653
Ensembl chr 1:119,638,481...119,654,653
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Snrpb
small nuclear ribonucleoprotein polypeptides B and B1
involved_in
ISS IBA ISO
GO_REF:0000024 GO_REF:0000033 (PMID:28076346), (PMID:28781166), (PMID:32494006), (PMID:36797247)
UniProt GO_Central RGD
PMID:28076346 PMID:28781166 PMID:32494006 PMID:36797247
GO_REF:0000024 GO_REF:0000033
NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339
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Snrpb2
small nuclear ribonucleoprotein polypeptide B2
involved_in
ISO IBA
(PMID:28076346), (PMID:28781166), (PMID:32494006), (PMID:36797247) GO_REF:0000033
RGD GO_Central
PMID:28076346 PMID:28781166 PMID:32494006 PMID:36797247
GO_REF:0000033
NCBI chr 3:130,399,239...130,408,821
Ensembl chr 3:130,399,248...130,408,812
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Snrpc
small nuclear ribonucleoprotein polypeptide C
involved_in
ISO
(PMID:8972845)
RGD
PMID:8972845
NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638
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Snrpd1
small nuclear ribonucleoprotein D1 polypeptide
involved_in
ISO
(PMID:28076346), (PMID:32494006), (PMID:36797247)
RGD
PMID:28076346 PMID:32494006 PMID:36797247
NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256
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Snrpd2
small nuclear ribonucleoprotein D2 polypeptide
involved_in
ISO
(PMID:28076346), (PMID:32494006), (PMID:36797247)
RGD
PMID:28076346 PMID:32494006 PMID:36797247
NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351
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Snrpd3
small nuclear ribonucleoprotein D3 polypeptide
involved_in
ISO
(PMID:28076346), (PMID:32494006), (PMID:36797247)
RGD
PMID:28076346 PMID:32494006 PMID:36797247
NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978
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Snrpe
small nuclear ribonucleoprotein polypeptide E
involved_in
ISO
(PMID:28076346), (PMID:32494006), (PMID:36797247)
RGD
PMID:28076346 PMID:32494006 PMID:36797247
NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310 Ensembl chr 8:45,050,986...45,057,310
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Snrpf
small nuclear ribonucleoprotein polypeptide F
involved_in
ISO IBA
(PMID:28076346), (PMID:32494006), (PMID:36797247) GO_REF:0000033
RGD GO_Central
PMID:28076346 PMID:32494006 PMID:36797247
GO_REF:0000033
NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129
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Snrpg
small nuclear ribonucleoprotein polypeptide G
involved_in
ISO IBA
(PMID:28076346), (PMID:32494006), (PMID:36797247) GO_REF:0000033
RGD GO_Central
PMID:28076346 PMID:32494006 PMID:36797247
GO_REF:0000033
NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826
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Snrpgl1
small nuclear ribonucleoprotein polypeptide G like 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:87,982,629...87,983,056
Ensembl chr 1:87,982,626...87,983,118 Ensembl chr 4:87,982,626...87,983,118
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Snrpn
small nuclear ribonucleoprotein polypeptide N
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:111,101,327...111,123,400
Ensembl chr 1:111,101,329...111,123,634
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Snu13
small nuclear ribonucleoprotein 13
involved_in
ISO IBA ISS
(PMID:28781166) GO_REF:0000033 GO_REF:0000024
RGD GO_Central UniProt
PMID:28781166
GO_REF:0000024 GO_REF:0000033
NCBI chr 7:113,565,293...113,570,887
Ensembl chr 7:113,565,295...113,570,872 Ensembl chr 1:113,565,295...113,570,872
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Snu13l1
small nuclear ribonucleoprotein 13 like 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:150,624,087...150,624,525
Ensembl chr X:150,624,087...150,624,473
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Snw1
SNW domain containing 1
involved_in
ISO
(PMID:15194481), (PMID:28076346)
RGD
PMID:15194481 PMID:28076346
NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
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Srrm2
serine/arginine repetitive matrix 2
involved_in
ISO
(PMID:28076346)
RGD
PMID:28076346
NCBI chr10:12,815,471...12,848,750
Ensembl chr10:12,815,471...12,848,751
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Srsf10
serine and arginine rich splicing factor 10
involved_in
ISO IBA
(PMID:9774382) GO_REF:0000033
RGD GO_Central
PMID:9774382
GO_REF:0000033
NCBI chr 5:148,088,759...148,102,964
Ensembl chr 5:148,088,823...148,101,768
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Srsf12
serine and arginine rich splicing factor 12
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 5:47,606,526...47,631,509
Ensembl chr 5:47,606,285...47,629,778
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Srsf5
serine and arginine rich splicing factor 5
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:100,605,165...100,610,192
Ensembl chr 6:100,605,456...100,610,177
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Syf2
SYF2 pre-mRNA-splicing factor
involved_in
ISO ISS
(PMID:28076346) GO_REF:0000024
RGD UniProt
PMID:28076346
GO_REF:0000024
NCBI chr 5:147,156,492...147,164,416
Ensembl chr 5:147,156,480...147,164,414
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Tra2a
transformer 2 alpha
involved_in
ISO
(PMID:9546399)
RGD
PMID:9546399
NCBI chr 4:78,220,838...78,239,737
Ensembl chr 4:78,220,883...78,239,712
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Tra2b
transformer 2 beta
involved_in acts_upstream_of
ISO IEA ISS
(PMID:9546399) MGI:2176173|MGI:4450919 (PMID:22194695) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:9546399 PMID:22194695
GO_REF:0000024 GO_REF:0000107
NCBI chr11:78,788,880...78,807,252
Ensembl chr11:78,788,884...78,807,249
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Txnl4a
thioredoxin-like 4A
involved_in
ISO
(PMID:28781166)
RGD
PMID:28781166
NCBI chr18:73,659,107...73,674,893
Ensembl chr18:73,659,107...73,674,893
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Txnl4b
thioredoxin-like 4B
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr19:37,530,157...37,539,827
Ensembl chr19:37,530,152...37,538,521
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U2af1
U2 small nuclear RNA auxiliary factor 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr20:9,742,904...9,753,840
Ensembl chr20:9,742,905...9,753,832
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U2af1l4
U2 small nuclear RNA auxiliary factor 1-like 4
involved_in
IEA IBA
GO_REF:0000002 GO_REF:0000033
InterPro GO_Central
GO_REF:0000002 GO_REF:0000033
NCBI chr 1:85,816,268...85,818,462
Ensembl chr 1:85,815,101...85,818,462
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U2af2
U2 small nuclear RNA auxiliary factor 2
involved_in
ISO
(PMID:1824937)
RGD
PMID:1824937
NCBI chr 1:68,760,911...68,779,730
Ensembl chr 1:68,760,924...68,778,492
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Ubl5
ubiquitin-like 5
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:19,181,504...19,185,224
Ensembl chr 8:19,181,615...19,185,217
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Usp39
ubiquitin specific peptidase 39
involved_in
ISO
(PMID:11350945)
RGD
PMID:11350945
NCBI chr 4:104,373,948...104,406,359
Ensembl chr 4:104,373,955...104,406,359
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Usp49
ubiquitin specific peptidase 49
involved_in
ISO
(PMID:23824326)
RGD
PMID:23824326
NCBI chr 9:13,305,640...13,366,132
Ensembl chr 9:13,308,178...13,366,132
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Wbp4
WW domain binding protein 4
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000002 (PMID:28781166)
UniProt InterPro RGD
PMID:28781166
GO_REF:0000002 GO_REF:0000024
NCBI chr15:54,862,700...54,890,668
Ensembl chr15:54,862,843...54,890,647
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Wdr83
WD repeat domain 83
involved_in
ISO IBA IEA
(PMID:11991638) GO_REF:0000033 GO_REF:0000107
RGD GO_Central Ensembl
PMID:11991638
GO_REF:0000033 GO_REF:0000107
NCBI chr19:23,076,948...23,082,569
Ensembl chr19:23,077,010...23,082,563
G
Xab2
XPA binding protein 2
involved_in
ISO IBA IEA ISS
(PMID:28076346) GO_REF:0000033 GO_REF:0000002 GO_REF:0000107 GO_REF:0000024
RGD GO_Central InterPro Ensembl UniProt
PMID:28076346
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692
G
Yju2b
YJU2 splicing factor homolog B
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr19:23,894,587...23,906,084
Ensembl chr19:23,894,649...23,906,077
G
Ythdc1
YTH N6-methyladenosine RNA binding protein C1
involved_in
IDA IBA
GO_REF:0000033
GO_Central RGD
PMID:10564280
GO_REF:0000033, RGD:634512
NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028
G
Zcrb1
zinc finger CCHC-type and RNA binding motif containing 1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 7:124,525,227...124,538,564
Ensembl chr 7:124,524,870...124,571,261
G
Zmat2
zinc finger, matrin type 2
involved_in
ISO IBA
(PMID:28781166) GO_REF:0000033
RGD GO_Central
PMID:28781166
GO_REF:0000033
NCBI chr18:28,409,606...28,414,241
Ensembl chr18:28,398,795...28,414,747
G
Zrsr2
zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2
involved_in
ISO IBA IGI
(PMID:9237760) GO_REF:0000033
RGD GO_Central
PMID:9237760 PMID:33691379
GO_REF:0000033, RGD:151232289
NCBI chr X:30,547,424...30,571,613
Ensembl chr X:30,547,536...30,570,125
G
Zrsr2-ps1
zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2, pseudogene 1
involved_in
IBA ISO
GO_REF:0000033 (PMID:29617656)
GO_Central RGD
PMID:29617656
GO_REF:0000033
NCBI chr14:96,972,651...96,978,364
Ensembl chr14:96,972,580...96,978,891
G
AABR07001435.1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 1:43,640,876...43,641,875
G
AABR07056845.1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
Ensembl chr 7:37,066,520...37,067,514
G
Bcas2
BCAS2, pre-mRNA processing factor
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:34972250) GO_REF:0000107
RGD Ensembl
PMID:34972250
GO_REF:0000107
NCBI chr 2:190,692,503...190,700,386
Ensembl chr 2:190,692,461...190,700,389
G
Cdk13
cyclin-dependent kinase 13
involved_in
ISO
(PMID:17261272)
RGD
PMID:17261272
NCBI chr17:47,251,145...47,344,675
Ensembl chr17:47,251,163...47,341,721
G
Celf4
CUGBP, Elav-like family member 4
acts_upstream_of_or_within
ISO
(PMID:19720736)
RGD
PMID:19720736
NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786
G
Ddx17
DEAD-box helicase 17
involved_in
ISO IBA
(PMID:24275493), (PMID:24910439) (PMID:24910439) GO_REF:0000033
RGD GO_Central
PMID:24275493 PMID:24910439
GO_REF:0000033
NCBI chr 7:111,091,127...111,109,353
Ensembl chr 7:111,089,445...111,109,193
G
Ddx5
DEAD-box helicase 5
involved_in
ISO IBA
(PMID:24275493), (PMID:24910439) (PMID:24910439) GO_REF:0000033
RGD GO_Central
PMID:24275493 PMID:24910439
GO_REF:0000033
NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283
G
Dhx9
DExH-box helicase 9
involved_in
ISO
(PMID:28221134)
RGD
PMID:28221134
NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
G
Esrp1
epithelial splicing regulatory protein 1
acts_upstream_of_or_within
ISO
MGI:1924661 (PMID:26371508)
RGD
PMID:26371508
NCBI chr 5:24,427,611...24,482,157
Ensembl chr 5:24,428,717...24,482,062
G
Esrp2
epithelial splicing regulatory protein 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1917326 (PMID:26371508)
Ensembl RGD
PMID:26371508
GO_REF:0000107
NCBI chr19:34,034,559...34,041,726
Ensembl chr19:34,034,559...34,041,726
G
Hnrnpa1
heterogeneous nuclear ribonucleoprotein A1
acts_upstream_of_or_within
ISO
(PMID:15798186)
RGD
PMID:15798186
NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609
G
Hnrnpm
heterogeneous nuclear ribonucleoprotein M
involved_in
ISO
(PMID:19874820)
RGD
PMID:19874820
NCBI chr 7:14,438,703...14,476,781
Ensembl chr 7:14,438,688...14,476,762
G
Mbnl1
muscleblind-like splicing regulator 1
acts_upstream_of_or_within
ISO
MGI:3052922 (PMID:19075228), (PMID:19720736)
RGD
PMID:19075228 PMID:19720736
NCBI chr 2:144,639,819...144,814,395
Ensembl chr 2:144,670,285...144,814,368
G
Pqbp1
polyglutamine binding protein 1
involved_in
ISO IBA ISS
(PMID:23512658) GO_REF:0000033 GO_REF:0000024
RGD GO_Central UniProt
PMID:23512658
GO_REF:0000024 GO_REF:0000033
NCBI chr X:14,603,516...14,608,091
Ensembl chr X:14,603,539...14,608,087
G
Puf60
poly-U binding splicing factor 60
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:107,782,799...107,793,759
Ensembl chr 7:107,782,770...107,794,531
G
Rbm17
RNA binding motif protein 17
involved_in
ISO IBA
(PMID:17589525) GO_REF:0000033
RGD GO_Central
PMID:17589525
GO_REF:0000033
NCBI chr17:66,937,140...66,954,034
Ensembl chr17:66,937,140...66,954,014
G
Rsrc1
arginine and serine rich coiled-coil 1
involved_in acts_upstream_of_or_within
IEA ISO IBA
GO_REF:0000002 (PMID:15798186) GO_REF:0000033
InterPro RGD GO_Central
PMID:15798186
GO_REF:0000002 GO_REF:0000033
NCBI chr 2:151,226,821...151,632,771
Ensembl chr 2:151,231,156...151,632,765
G
Sfpq
splicing factor proline and glutamine rich
involved_in
ISO IBA
(PMID:19874820) GO_REF:0000033
RGD GO_Central
PMID:19874820
GO_REF:0000033
NCBI chr 5:139,338,034...139,353,476
Ensembl chr 5:139,338,075...139,353,472
G
Sfswap
splicing factor SWAP
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:8940107)
Ensembl RGD
PMID:8940107
GO_REF:0000107
NCBI chr12:27,109,607...27,179,941
Ensembl chr12:27,109,611...27,179,884
G
Slu7
SLU7 homolog, splicing factor
involved_in
ISO ISS
(PMID:15728250) PMID:15181151
RGD
PMID:15728250 PMID:15181151
RGD:1304333
NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349
G
Smptb
polypyrimidine tract-binding protein
IDA
RGD
PMID:12578833
RGD:1299129
NCBI chr X:16,609,016...16,610,898
Ensembl chr X:16,606,597...16,610,874
G
Srsf1
serine and arginine rich splicing factor 1
involved_in
IMP IBA ISO
GO_REF:0000033 (PMID:8940107)
GO_Central RGD
PMID:8940107 PMID:23462647
GO_REF:0000033, RGD:11038736
NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336
G
Srsf6
serine and arginine rich splicing factor 6
involved_in
ISS ISO
GO_REF:0000024 (PMID:22767602)
UniProt RGD
PMID:22767602
GO_REF:0000024
NCBI chr 3:151,589,546...151,594,869
Ensembl chr 3:151,589,535...151,594,860
G
Srsf9
serine and arginine rich splicing factor 9
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr12:41,278,225...41,284,502
Ensembl chr12:41,275,687...41,284,499
G
Strap
serine/threonine kinase receptor associated protein
involved_in
ISO
(PMID:33230114)
RGD
PMID:33230114
NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828
G
LOC134482366
splicing factor YJU2-like
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
G
Xab2
XPA binding protein 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692
G
Yju2
YJU2 splicing factor
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr 9:789,603...799,505
Ensembl chr 9:789,606...799,496
G
Isy1
ISY1 splicing factor homolog
involved_in
IEA IBA
GO_REF:0000002 GO_REF:0000033
InterPro GO_Central
GO_REF:0000002 GO_REF:0000033
NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188
G
Prpf18
pre-mRNA processing factor 18
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr17:73,630,560...73,661,210
Ensembl chr17:73,630,571...73,690,979
G
Isy1
ISY1 splicing factor homolog
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188
G
Slu7
SLU7 homolog, splicing factor
involved_in
ISO ISS
(PMID:15728250) PMID:15181151
RGD
PMID:15728250 PMID:15181151
RGD:1304333
NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349
G
ENSRNOG00000066758
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
Ensembl chr X:14,995,412...14,996,454
G
LOC120099250
U1 small nuclear ribonucleoprotein C-like
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr X:135,673,708...135,678,865
G
Prpf39
pre-mRNA processing factor 39
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:83,088,981...83,113,826
Ensembl chr 6:83,088,986...83,113,825
G
Psip1
PC4 and SRSF1 interacting protein 1
involved_in
ISO IEA ISS
(PMID:9885563) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:9885563
GO_REF:0000024 GO_REF:0000107
NCBI chr 5:97,847,010...97,879,280
Ensembl chr 5:97,847,015...97,879,257
G
Sfswap
splicing factor SWAP
involved_in acts_upstream_of_or_within
IEA ISO IBA
GO_REF:0000107 (PMID:8940107) GO_REF:0000033
Ensembl RGD GO_Central
PMID:8940107
GO_REF:0000033 GO_REF:0000107
NCBI chr12:27,109,607...27,179,941
Ensembl chr12:27,109,611...27,179,884
G
Snrpc
small nuclear ribonucleoprotein polypeptide C
involved_in
IEA IBA
GO_REF:0000104 GO_REF:0000033
UniProt GO_Central
GO_REF:0000033 GO_REF:0000104
NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638
G
Srsf1
serine and arginine rich splicing factor 1
involved_in
ISO
(PMID:8940107), (PMID:9885563)
RGD
PMID:8940107 PMID:9885563
NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336
G
Srsf12
serine and arginine rich splicing factor 12
involved_in
ISO
(PMID:11684676)
RGD
PMID:11684676
NCBI chr 5:47,606,526...47,631,509
Ensembl chr 5:47,606,285...47,629,778
G
C3h9orf78
similar to human chromosome 9 open reading frame 78
involved_in
ISO
(PMID:35241646)
RGD
PMID:35241646
NCBI chr 3:14,264,262...14,272,552
Ensembl chr 3:14,264,083...14,272,764
G
Cactin
cactin, spliceosome C complex subunit
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:8,391,396...8,397,219
Ensembl chr 7:8,391,397...8,396,829
G
Clns1a
chloride nucleotide-sensitive channel 1A
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:152,019,369...152,039,670
Ensembl chr 1:152,019,378...152,039,661
G
Cwc15
CWC15 spliceosome-associated protein
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:11,305,401...11,316,326
Ensembl chr 8:11,305,424...11,316,325
G
Dcps
decapping enzyme, scavenger
involved_in
ISS ISO
GO_REF:0000024 (PMID:18426921)
UniProt RGD
PMID:18426921
GO_REF:0000024
NCBI chr 8:33,468,669...33,524,407
Ensembl chr 8:33,415,671...33,524,389
G
Ncbp2
nuclear cap binding protein subunit 2
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 GO_REF:0000002 (PMID:18426921)
UniProt Ensembl InterPro RGD
PMID:18426921
GO_REF:0000002 GO_REF:0000024 GO_REF:0000107
NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885
G
Prpf40a
pre-mRNA processing factor 40 homolog A
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 3:37,625,585...37,689,859
Ensembl chr 3:37,627,690...37,690,886
G
Prpf40b
pre-mRNA processing factor 40 homolog B
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 7:130,392,611...130,454,053
Ensembl chr 7:130,432,112...130,454,052
G
Prpf4b
pre-mRNA processing factor 4B
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr17:29,985,343...30,020,285
Ensembl chr17:29,985,343...30,019,625
G
Rbm17
RNA binding motif protein 17
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr17:66,937,140...66,954,034
Ensembl chr17:66,937,140...66,954,014
G
Rbm22
RNA binding motif protein 22
involved_in
ISO ISS
(PMID:22246180) GO_REF:0000024
RGD UniProt
PMID:22246180
GO_REF:0000024
NCBI chr18:54,013,374...54,024,182
Ensembl chr18:54,013,351...54,024,569
G
Sart1
spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:202,690,472...202,699,136
Ensembl chr 1:202,690,459...202,699,136
G
Sde2
SDE2 telomere maintenance homolog
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:34365507) GO_REF:0000024
Ensembl RGD UniProt
PMID:34365507
GO_REF:0000024 GO_REF:0000107
NCBI chr13:92,578,843...92,595,142
Ensembl chr13:92,578,874...92,595,140
G
Sf3a1
splicing factor 3A subunit 1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr14:79,031,394...79,052,144
Ensembl chr14:79,031,394...79,052,144
G
Srsf7
serine and arginine rich splicing factor 7
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:14,811,775...14,818,968
Ensembl chr 6:14,811,808...14,818,965
G
Wbp4
WW domain binding protein 4
involved_in
ISO IEA ISS
(PMID:19592703) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:19592703
GO_REF:0000024 GO_REF:0000107
NCBI chr15:54,862,700...54,890,668
Ensembl chr15:54,862,843...54,890,647
G
Celf1
CUGBP, Elav-like family member 1
involved_in acts_upstream_of_or_within
ISO IBA IEA
(PMID:11158314) GO_REF:0000033 GO_REF:0000107
RGD GO_Central Ensembl
PMID:11158314
GO_REF:0000033 GO_REF:0000107
NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426
G
Celf2
CUGBP, Elav-like family member 2
involved_in acts_upstream_of_or_within
ISO IBA IEA
(PMID:11158314) GO_REF:0000033 GO_REF:0000107
RGD GO_Central Ensembl
PMID:11158314
GO_REF:0000033 GO_REF:0000107
NCBI chr17:70,904,462...71,729,072
Ensembl chr17:71,210,853...71,728,333
G
Celf3
CUGBP, Elav-like family member 3
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 2:182,116,034...182,130,163
Ensembl chr 2:182,116,073...182,130,163
G
Celf4
CUGBP, Elav-like family member 4
acts_upstream_of_or_within
ISO
(PMID:11158314)
RGD
PMID:11158314
NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786
G
Celf5
CUGBP, Elav-like family member 5
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:8,225,787...8,250,322
Ensembl chr 7:8,225,825...8,250,322
G
Celf6
CUGBP, Elav-like family member 6
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:59,975,095...60,006,060
Ensembl chr 8:59,975,088...60,005,041
G
Khdc4
KH domain containing 4, pre-mRNA splicing factor
involved_in
ISO
(PMID:19641227)
RGD
PMID:19641227
NCBI chr 2:174,149,059...174,177,816
Ensembl chr 2:174,149,141...174,177,504
G
Luc7l
LUC7-like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:15,273,340...15,307,131
Ensembl chr10:15,273,348...15,303,112
G
Luc7l2
LUC7-like 2 pre-mRNA splicing factor
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:67,287,593...67,347,986
Ensembl chr 4:67,287,640...67,347,964
G
Luc7l3
LUC7-like 3 pre-mRNA splicing factor
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:79,240,050...79,276,555
Ensembl chr10:79,240,563...79,276,538
G
Luc7l3-ps2
LUC7-like 3 pre-mRNA splicing factor, pseudogene 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 5:49,653,487...49,655,419
G
Mbnl1
muscleblind-like splicing regulator 1
acts_upstream_of_or_within
ISO
MGI:3052922 (PMID:14671308), (PMID:16717059)
RGD
PMID:14671308 PMID:16717059
NCBI chr 2:144,639,819...144,814,395
Ensembl chr 2:144,670,285...144,814,368
G
Nol3
nucleolar protein 3
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:10196175)
UniProt Ensembl RGD
PMID:10196175
GO_REF:0000024 GO_REF:0000107
NCBI chr19:33,154,061...33,158,250
Ensembl chr19:33,154,062...33,158,250
G
Ptbp2
polypyrimidine tract binding protein 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:4124189 (PMID:10829067), (PMID:22802532)
Ensembl RGD
PMID:10829067 PMID:22802532
GO_REF:0000107
NCBI chr 2:207,812,659...207,874,019
Ensembl chr 2:207,812,920...207,873,506
G
Puf60
poly-U binding splicing factor 60
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:107,782,799...107,793,759
Ensembl chr 7:107,782,770...107,794,531
G
Rbmx
RNA binding motif protein, X-linked
IMP
RGD
PMID:19282290
RGD:2316827
NCBI chr X:135,305,237...135,314,806
Ensembl chr X:135,305,325...135,314,743
G
Rbmxl1
Rbmx like 1
involved_in
IDA
PMID:19282290
UniProt
PMID:19282290
RGD:2316827
NCBI chr19:29,407,902...29,411,519
Ensembl chr19:29,407,912...29,412,859
G
Setx
senataxin
involved_in
ISO
(PMID:19515850)
RGD
PMID:19515850
NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
G
Srsf10
serine and arginine rich splicing factor 10
involved_in
ISO
(PMID:9774382)
RGD
PMID:9774382
NCBI chr 5:148,088,759...148,102,964
Ensembl chr 5:148,088,823...148,101,768
G
Srsf6
serine and arginine rich splicing factor 6
involved_in
ISS ISO
GO_REF:0000024 (PMID:12549914)
UniProt RGD
PMID:12549914
GO_REF:0000024
NCBI chr 3:151,589,546...151,594,869
Ensembl chr 3:151,589,535...151,594,860
G
Ythdc1
YTH N6-methyladenosine RNA binding protein C1
involved_in
ISS ISO
GO_REF:0000024 (PMID:20167602)
UniProt RGD
PMID:20167602
GO_REF:0000024
NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028
G
Acin1
apoptotic chromatin condensation inducer 1
involved_in
ISO
(PMID:12665594)
RGD
PMID:12665594
NCBI chr15:28,102,112...28,147,001
Ensembl chr15:28,102,112...28,147,001
G
Akr1c1
aldo-keto reductase family 1, member C1
acts_upstream_of_or_within
ISO
(PMID:23636947)
RGD
PMID:23636947
NCBI chr17:65,810,474...65,837,385
Ensembl chr17:65,810,475...65,837,326
G
C1qbp
complement C1q binding protein
involved_in
ISO IBA IEA ISS
(PMID:10022843) GO_REF:0000033 GO_REF:0000107 GO_REF:0000024
RGD GO_Central Ensembl UniProt
PMID:10022843
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr10:55,699,954...55,704,605
Ensembl chr10:55,699,954...55,704,649
G
Celf4
CUGBP, Elav-like family member 4
acts_upstream_of_or_within
ISO
(PMID:23636947)
RGD
PMID:23636947
NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786
G
Dyrk1a
dual specificity tyrosine phosphorylation regulated kinase 1A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:21470964)
Ensembl RGD
PMID:21470964
GO_REF:0000107
NCBI chr11:33,890,706...34,009,420
Ensembl chr11:33,890,490...34,009,420
G
Hnrnpa2b1
heterogeneous nuclear ribonucleoprotein A2/B1
acts_upstream_of_or_within
ISO
(PMID:18480465)
RGD
PMID:18480465
NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249
G
Hnrnpk
heterogeneous nuclear ribonucleoprotein K
acts_upstream_of_or_within
ISO
(PMID:23636947)
RGD
PMID:23636947
NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997
G
Hnrnpl
heterogeneous nuclear ribonucleoprotein L
IMP
RGD
PMID:22570490
RGD:9999428
NCBI chr 1:84,098,558...84,111,568
Ensembl chr 1:84,100,879...84,111,553
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Npm1
nucleophosmin 1
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:16376875) GO_REF:0000107
RGD Ensembl
PMID:16376875
GO_REF:0000107
NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
G
Pcbp4
poly(rC) binding protein 4
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 (PMID:23636947)
GO_Central RGD
PMID:23636947
GO_REF:0000033
NCBI chr 8:107,092,688...107,103,276
Ensembl chr 8:107,093,013...107,103,276
G
Ptbp1
polypyrimidine tract binding protein 1
involved_in acts_upstream_of_or_within
ISO ISS
(PMID:15009664) (PMID:17679093) (PMID:23636947) GO_REF:0000024
RGD UniProt
PMID:15009664 PMID:17679093 PMID:23636947
GO_REF:0000024
NCBI chr 7:9,842,574...9,852,332
Ensembl chr 7:9,842,574...9,852,397
G
Ptbp3
polypyrimidine tract binding protein 3
acts_upstream_of_or_within
ISO
(PMID:23636947)
RGD
PMID:23636947
NCBI chr 5:74,313,367...74,399,439
Ensembl chr 5:74,315,101...74,399,791
G
Rbm10
RNA binding motif protein 10
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:23636947)
Ensembl RGD
PMID:23636947
GO_REF:0000107
NCBI chr X:1,540,399...1,572,571
Ensembl chr X:1,540,398...1,572,575
G
Rbm20
RNA binding motif protein 20
involved_in
IMP ISO IDA
PMID:35394688 (PMID:27630136), (PMID:29895960), (PMID:33110103) (PMID:24960161), (PMID:34732726) PMID:25573899 PMID:23307558
RGD
PMID:24960161 PMID:27630136 PMID:29895960 PMID:33110103 PMID:34732726 PMID:35394688 PMID:25573899 PMID:23307558 PMID:24960161 More...
RGD:152025505 , RGD:152025519 , RGD:152025504 , RGD:152025509
NCBI chr 1:252,683,760...252,907,465
Ensembl chr 1:252,683,771...252,886,060
G
Rbm42
RNA binding motif protein 42
acts_upstream_of_or_within
ISO
(PMID:23636947)
RGD
PMID:23636947
NCBI chr 1:85,898,618...85,908,569
Ensembl chr 1:85,898,625...85,908,573
G
Rbmxl1
Rbmx like 1
involved_in
IDA
PMID:15009664
UniProt
PMID:15009664
RGD:8554197
NCBI chr19:29,407,902...29,411,519
Ensembl chr19:29,407,912...29,412,859
G
Rnps1
RNA binding protein with serine rich domain 1
involved_in
ISO ISS
(PMID:12665594) GO_REF:0000024
RGD UniProt
PMID:12665594
GO_REF:0000024
NCBI chr10:13,445,516...13,455,858
Ensembl chr10:13,445,653...13,455,858
G
Sap18
Sin3A associated protein 18
involved_in
ISO
(PMID:12665594)
RGD
PMID:12665594
NCBI chr15:31,943,228...31,947,534
Ensembl chr15:31,943,230...31,950,038 Ensembl chr10:31,943,230...31,950,038
G
Sfswap
splicing factor SWAP
involved_in
IDA
PMID:15009664
UniProt
PMID:15009664
RGD:8554197
NCBI chr12:27,109,607...27,179,941
Ensembl chr12:27,109,611...27,179,884
G
Srsf10
serine and arginine rich splicing factor 10
involved_in
ISO
(PMID:11684676)
RGD
PMID:11684676
NCBI chr 5:148,088,759...148,102,964
Ensembl chr 5:148,088,823...148,101,768
G
Srsf4
serine and arginine rich splicing factor 4
involved_in
ISO
(PMID:15009664)
RGD
PMID:15009664
NCBI chr 5:144,060,981...144,090,798
Ensembl chr 5:144,061,463...144,089,229
G
Srsf6
serine and arginine rich splicing factor 6
involved_in
ISO
(PMID:15009664)
RGD
PMID:15009664
NCBI chr 3:151,589,546...151,594,869
Ensembl chr 3:151,589,535...151,594,860
G
Srsf7
serine and arginine rich splicing factor 7
involved_in
ISO
(PMID:15009664)
RGD
PMID:15009664
NCBI chr 6:14,811,775...14,818,968
Ensembl chr 6:14,811,808...14,818,965
G
Srsf9
serine and arginine rich splicing factor 9
involved_in
ISO ISS
(PMID:15009664) GO_REF:0000024
RGD UniProt
PMID:15009664
GO_REF:0000024
NCBI chr12:41,278,225...41,284,502
Ensembl chr12:41,275,687...41,284,499
G
U2af2
U2 small nuclear RNA auxiliary factor 2
involved_in
ISO
(PMID:15009664)
RGD
PMID:15009664
NCBI chr 1:68,760,911...68,779,730
Ensembl chr 1:68,760,924...68,778,492
G
Eif1
eukaryotic translation initiation factor 1
acts_upstream_of_or_within
ISO
(PMID:16789828)
RGD
PMID:16789828
NCBI chr10:85,246,751...85,248,842
Ensembl chr10:85,246,764...85,427,327
G
Exosc10
exosome component 10
acts_upstream_of_or_within
ISO
(PMID:16789828)
RGD
PMID:16789828
NCBI chr 5:158,995,313...159,018,940
Ensembl chr 5:158,995,313...159,018,940
G
Upf1
UPF1, RNA helicase and ATPase
acts_upstream_of_or_within
ISO
(PMID:16789828)
RGD
PMID:16789828
NCBI chr16:19,076,594...19,097,365
Ensembl chr16:19,076,322...19,096,568
G
Upf3a
UPF3A, regulator of nonsense mediated mRNA decay
acts_upstream_of_or_within
ISO
(PMID:16789828)
RGD
PMID:16789828
NCBI chr16:75,757,442...75,768,478
Ensembl chr16:75,757,441...75,769,345
G
Upf3b
UPF3B, regulator of nonsense mediated mRNA decay
acts_upstream_of_or_within
ISO
(PMID:16789828)
RGD
PMID:16789828
NCBI chr X:116,335,308...116,353,332
Ensembl chr X:116,335,308...116,353,236
G
Celf3
CUGBP, Elav-like family member 3
involved_in
ISO
(PMID:15009664)
RGD
PMID:15009664
NCBI chr 2:182,116,034...182,130,163
Ensembl chr 2:182,116,073...182,130,163
G
Celf4
CUGBP, Elav-like family member 4
involved_in
ISO
(PMID:15009664)
RGD
PMID:15009664
NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786
G
Cirbp
cold inducible RNA binding protein
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:9,533,857...9,538,899
Ensembl chr 7:9,424,178...9,538,818
G
Dazap1
DAZ associated protein 1
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 (PMID:23636947)
GO_Central RGD
PMID:23636947
GO_REF:0000033
NCBI chr 7:9,423,673...9,448,116
Ensembl chr 7:9,424,178...9,538,818
G
Eif4a3
eukaryotic translation initiation factor 4A3
acts_upstream_of_or_within
ISO
(PMID:18480465)
RGD
PMID:18480465
NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057
G
Haus8l2
HAUS augmin-like complex, subunit 8 like 2
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr11:5,628,432...5,630,535
Ensembl chr11:5,628,427...5,630,533
G
Hmx2
H6 family homeobox 2
acts_upstream_of_or_within
ISO
(PMID:23636947)
RGD
PMID:23636947
NCBI chr 1:186,319,110...186,326,771
Ensembl chr 1:186,319,110...186,326,771
G
Hspa8
heat shock protein family A (Hsp70) member 8
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:23636947)
Ensembl RGD
PMID:23636947
GO_REF:0000107
NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259
G
Lmntd2
lamin tail domain containing 2
acts_upstream_of_or_within
ISO
(PMID:23636947)
RGD
PMID:23636947
NCBI chr 1:196,315,112...196,320,880
Ensembl chr 1:196,315,115...196,319,156
G
Ncbp1
nuclear cap binding protein subunit 1
involved_in
ISO
(PMID:23793891)
RGD
PMID:23793891
NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089
G
Ncl
nucleolin
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136
G
Nup98
nucleoporin 98 and 96 precursor
involved_in
ISO ISS
(PMID:28221134) GO_REF:0000024
RGD UniProt
PMID:28221134
GO_REF:0000024
NCBI chr 1:156,494,423...156,591,415
Ensembl chr 1:156,494,423...156,591,415
G
Obi1
ORC ubiquitin ligase 1
acts_upstream_of_or_within
ISO
(PMID:23636947)
RGD
PMID:23636947
NCBI chr15:81,269,413...81,308,734
Ensembl chr15:81,269,416...81,308,734
G
Prdx6
peroxiredoxin 6
involved_in
ISO
UniProtKB:Q8IWL8 (PMID:16186110)
RGD
PMID:16186110
NCBI chr13:73,528,746...73,539,295
Ensembl chr13:73,528,210...73,539,355
G
Prpf19
pre-mRNA processing factor 19
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:18480465)
Ensembl RGD
PMID:18480465
GO_REF:0000107
NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
G
Rbm3
RNA binding motif protein 3
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:14,348,909...14,352,387
Ensembl chr X:14,348,910...14,353,580
G
Rbmx
RNA binding motif protein, X-linked
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:135,305,237...135,314,806
Ensembl chr X:135,305,325...135,314,743
G
Rbmxl1
Rbmx like 1
involved_in
IDA IBA
PMID:19282290 GO_REF:0000033
GO_Central
PMID:19282290
GO_REF:0000033, RGD:2316827
NCBI chr19:29,407,902...29,411,519
Ensembl chr19:29,407,912...29,412,859
G
Rbmxl1b
Rbmx like 1B
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:43,956,275...43,957,957
Ensembl chr 4:43,956,281...43,957,944
G
Rbmy1j
RNA binding motif protein, Y-linked, family 1, member J
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr Y:415,160...425,460
Ensembl chr Y:415,178...425,426
G
Slc39a5
solute carrier family 39 member 5
acts_upstream_of_or_within
ISO
(PMID:23636947)
RGD
PMID:23636947
NCBI chr 7:822,873...830,865
Ensembl chr 7:824,818...830,242
G
Slirp
SRA stem-loop interacting RNA binding protein
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:107,088,760...107,097,791
Ensembl chr 6:107,088,403...107,097,791
G
Snrnp70
small nuclear ribonucleoprotein U1 subunit 70
acts_upstream_of_or_within
ISO
(PMID:23636947)
RGD
PMID:23636947
NCBI chr 1:95,856,038...95,876,434
Ensembl chr 1:95,856,036...95,876,392
G
Snw1
SNW domain containing 1
involved_in
ISO
(PMID:12840015)
RGD
PMID:12840015
NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
G
Thrap3
thyroid hormone receptor associated protein 3
involved_in
ISS ISO
GO_REF:0000024 (PMID:20123736)
UniProt RGD
PMID:20123736
GO_REF:0000024
NCBI chr 5:138,445,284...138,487,544
Ensembl chr 5:138,445,295...138,487,477
G
Tra2a
transformer 2 alpha
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 (PMID:22194695)
GO_Central RGD
PMID:22194695
GO_REF:0000033
NCBI chr 4:78,220,838...78,239,737
Ensembl chr 4:78,220,883...78,239,712
G
Tra2b
transformer 2 beta
involved_in acts_upstream_of_or_within
ISS ISO IBA IEA
GO_REF:0000024 MGI:2176173|MGI:4450919 (PMID:22194695) GO_REF:0000033 GO_REF:0000107 (PMID:15009664)
UniProt RGD GO_Central Ensembl
PMID:15009664 PMID:22194695
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr11:78,788,880...78,807,252
Ensembl chr11:78,788,884...78,807,249
G
Zfp64
zinc finger protein 64
acts_upstream_of_or_within
ISO
(PMID:23636947)
RGD
PMID:23636947
NCBI chr 3:157,666,819...157,695,774
Ensembl chr 3:157,633,211...157,695,809
G
Arb2a
ARB2 cotranscriptional regulator A
involved_in
ISO
(PMID:29311329)
RGD
PMID:29311329
NCBI chr 2:7,553,873...8,018,183
Ensembl chr 2:7,553,891...8,018,162
G
Arglu1
arginine and glutamate rich 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:30698747)
UniProt RGD
PMID:30698747
GO_REF:0000024
NCBI chr16:80,753,300...80,777,350
Ensembl chr16:80,753,315...80,777,349
G
Celf1
CUGBP, Elav-like family member 1
involved_in acts_upstream_of_or_within
IEA ISO IBA
GO_REF:0000107 (PMID:32109384) GO_REF:0000033
Ensembl RGD GO_Central
PMID:32109384
GO_REF:0000033 GO_REF:0000107
NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426
G
Celf2
CUGBP, Elav-like family member 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr17:70,904,462...71,729,072
Ensembl chr17:71,210,853...71,728,333
G
Celf3
CUGBP, Elav-like family member 3
involved_in
ISO IBA
(PMID:11158314) GO_REF:0000033
RGD GO_Central
PMID:11158314
GO_REF:0000033
NCBI chr 2:182,116,034...182,130,163
Ensembl chr 2:182,116,073...182,130,163
G
Celf4
CUGBP, Elav-like family member 4
involved_in acts_upstream_of_or_within
ISO
(PMID:11158314) (PMID:19720736)
RGD
PMID:11158314 PMID:19720736
NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786
G
Celf5
CUGBP, Elav-like family member 5
involved_in
ISO IBA
(PMID:11158314) GO_REF:0000033
RGD GO_Central
PMID:11158314
GO_REF:0000033
NCBI chr 7:8,225,787...8,250,322
Ensembl chr 7:8,225,825...8,250,322
G
Celf6
CUGBP, Elav-like family member 6
involved_in
ISO IBA
(PMID:14761971) GO_REF:0000033
RGD GO_Central
PMID:14761971
GO_REF:0000033
NCBI chr 8:59,975,095...60,006,060
Ensembl chr 8:59,975,088...60,005,041
G
Ddx17
DEAD-box helicase 17
involved_in
ISO
(PMID:23022728)
RGD
PMID:23022728
NCBI chr 7:111,091,127...111,109,353
Ensembl chr 7:111,089,445...111,109,193
G
Ddx5
DEAD-box helicase 5
involved_in
ISO
(PMID:21343338), (PMID:23022728) (PMID:23022728)
RGD
PMID:21343338 PMID:23022728
NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283
G
Dyrk1a
dual specificity tyrosine phosphorylation regulated kinase 1A
involved_in
IDA
PMID:22767602
UniProt
PMID:22767602
RGD:8554210
NCBI chr11:33,890,706...34,009,420
Ensembl chr11:33,890,490...34,009,420
G
Eif4a3
eukaryotic translation initiation factor 4A3
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057
G
Fblim1
filamin binding LIM protein 1
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 5:153,883,945...153,915,524
Ensembl chr 5:153,883,960...153,913,757
G
Fmr1
fragile X messenger ribonucleoprotein 1
involved_in
ISO ISS
(PMID:18653529) GO_REF:0000024
RGD UniProt
PMID:18653529
GO_REF:0000024
NCBI chr X:147,240,239...147,278,057
Ensembl chr X:147,240,301...147,278,050
G
Hnrnpa1
heterogeneous nuclear ribonucleoprotein A1
involved_in
ISO IEA
(PMID:25689357) GO_REF:0000107
RGD Ensembl
PMID:25689357
GO_REF:0000107
NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609
G
Hnrnpl
heterogeneous nuclear ribonucleoprotein L
involved_in
ISO IEA ISS
(PMID:25623890) (PMID:22523384) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:22523384 PMID:25623890
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:84,098,558...84,111,568
Ensembl chr 1:84,100,879...84,111,553
G
Hnrnpu
heterogeneous nuclear ribonucleoprotein U
involved_in
IEA ISO
GO_REF:0000107 (PMID:22325991)
Ensembl RGD
PMID:22325991
GO_REF:0000107
NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588
G
Khdrbs1
KH RNA binding domain containing, signal transduction associated 1
involved_in
ISS IBA IDA ISO
GO_REF:0000024 GO_REF:0000033 PMID:15345239 (PMID:24514149)
UniProt GO_Central RGD
PMID:24514149 PMID:15345239
GO_REF:0000024 GO_REF:0000033, RGD:1358238
NCBI chr 5:142,051,844...142,089,175
Ensembl chr 5:142,063,570...142,089,180
G
Khdrbs2
KH RNA binding domain containing, signal transduction associated 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 9:34,447,023...34,953,684
Ensembl chr 9:34,447,056...34,915,530
G
Khdrbs3
KH RNA binding domain containing, signal transduction associated 3
involved_in
IDA IBA
PMID:15345239 GO_REF:0000033
GO_Central
PMID:15345239
GO_REF:0000033, RGD:1358238
NCBI chr 7:100,837,707...100,995,644
Ensembl chr 7:100,837,934...100,988,460
G
Magoh
mago homolog, exon junction complex subunit
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:22203037)
UniProt Ensembl RGD
PMID:22203037
GO_REF:0000024 GO_REF:0000107
NCBI chr 5:122,639,268...122,646,650
Ensembl chr 5:122,639,308...122,646,617
G
Mbnl1
muscleblind-like splicing regulator 1
involved_in
IMP
PMID:31283468
UniProt
PMID:31283468
RGD:243049249
NCBI chr 2:144,639,819...144,814,395
Ensembl chr 2:144,670,285...144,814,368
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Mbnl2
muscleblind-like splicing regulator 2
involved_in acts_upstream_of_or_within
IMP ISO
PMID:31283468 (PMID:19720736)
RGD
PMID:19720736 PMID:31283468
RGD:243049249
NCBI chr15:97,385,278...97,542,924
Ensembl chr15:97,385,244...97,542,937
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Myod1
myogenic differentiation 1
involved_in acts_upstream_of_or_within
ISS ISO
PMID:9525963 (PMID:9525963)
RGD
PMID:9525963 PMID:9525963
RGD:8553451
NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554
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Nova1
NOVA alternative splicing regulator 1
involved_in
ISS ISO IBA IEA
GO_REF:0000024 (PMID:14615540), (PMID:17065982), (PMID:27223325) GO_REF:0000033 GO_REF:0000107
UniProt RGD GO_Central Ensembl
PMID:14615540 PMID:17065982 PMID:27223325
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 6:63,780,105...63,905,567
Ensembl chr 6:63,783,489...63,906,289
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Nova2
NOVA alternative splicing regulator 2
involved_in
ISO IBA
(PMID:32197073) (PMID:14615540), (PMID:16041372), (PMID:17065982), (PMID:27223325) GO_REF:0000033
RGD GO_Central
PMID:14615540 PMID:16041372 PMID:17065982 PMID:27223325 PMID:32197073
GO_REF:0000033
NCBI chr 1:78,572,253...78,613,703
Ensembl chr 1:78,572,279...78,608,021
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Nsrp1
nuclear speckle splicing regulatory protein 1
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 GO_REF:0000002 (PMID:21296756)
UniProt Ensembl InterPro RGD
PMID:21296756
GO_REF:0000002 GO_REF:0000024 GO_REF:0000107
NCBI chr10:61,880,807...61,914,471
Ensembl chr10:61,880,825...61,914,471
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Ptbp1
polypyrimidine tract binding protein 1
involved_in
ISO ISS
(PMID:16260624), (PMID:21518792) GO_REF:0000024
RGD UniProt
PMID:16260624 PMID:21518792
GO_REF:0000024
NCBI chr 7:9,842,574...9,852,332
Ensembl chr 7:9,842,574...9,852,397
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Puf60
poly-U binding splicing factor 60
involved_in
IEA IBA
GO_REF:0000002 GO_REF:0000033
InterPro GO_Central
GO_REF:0000002 GO_REF:0000033
NCBI chr 7:107,782,799...107,793,759
Ensembl chr 7:107,782,770...107,794,531
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Rbfox1
RNA binding fox-1 homolog 1
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 (PMID:23300487)
GO_Central RGD
PMID:23300487
GO_REF:0000033
NCBI chr10:8,152,198...10,248,120
Ensembl chr10:8,152,198...9,686,659
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Rbfox2
RNA binding fox-1 homolog 2
involved_in acts_upstream_of_or_within
IEA ISO IBA IMP
GO_REF:0000002 (PMID:17101796), (PMID:17715393) MGI:1926224|MGI:4838182 (PMID:22357600) GO_REF:0000033 PMID:37548402 Cacna1c Fxr1, Mef2a, Mtmr3 Atp2b1, Mef2a Mcl1 GO_REF:0000107
InterPro RGD GO_Central Ensembl
PMID:17101796 PMID:17715393 PMID:22357600 PMID:37548402 PMID:28993448 PMID:27239029 PMID:31778749 PMID:35641779 More...
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107, RGD:401901235 , RGD:329848961 , RGD:329845874 , RGD:329845873 , RGD:329845872
NCBI chr 7:108,810,627...109,054,420
Ensembl chr 7:108,810,628...109,054,691
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Rbfox3
RNA binding fox-1 homolog 3
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:103,720,355...104,157,277
Ensembl chr10:103,720,636...104,156,935
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Rbm11
RNA binding motif protein 11
acts_upstream_of_or_within involved_in
ISO IBA
(PMID:21984414) GO_REF:0000033
RGD GO_Central
PMID:21984414
GO_REF:0000033
NCBI chr11:14,234,851...14,244,092
Ensembl chr11:14,234,890...14,244,090
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Rbm15
RNA binding motif protein 15
involved_in
ISO IBA
(PMID:26575292) (PMID:25468569) GO_REF:0000033
RGD GO_Central
PMID:25468569 PMID:26575292
GO_REF:0000033
NCBI chr 2:194,945,974...194,954,498
Ensembl chr 2:194,945,974...194,954,703
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Rbm15b
RNA binding motif protein 15B
involved_in
ISO IBA
(PMID:16129689) GO_REF:0000033
RGD GO_Central
PMID:16129689
GO_REF:0000033
NCBI chr 8:107,543,613...107,546,678
Ensembl chr 8:107,525,898...107,551,696
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Rbm20
RNA binding motif protein 20
involved_in
IMP IDA
PMID:33805770 PMID:27289039
UniProt
PMID:33805770 PMID:27289039
RGD:152995553 , RGD:152995577
NCBI chr 1:252,683,760...252,907,465
Ensembl chr 1:252,683,771...252,886,060
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Rbm24
RNA binding motif protein 24
involved_in
ISO IBA IDA
(PMID:26844700), (PMID:26990106), (PMID:29104163) (PMID:25313962) GO_REF:0000033 PMID:27289039
RGD GO_Central
PMID:25313962 PMID:26844700 PMID:26990106 PMID:29104163 PMID:27289039
GO_REF:0000033, RGD:152995577
NCBI chr17:18,275,681...18,288,231
Ensembl chr17:18,275,688...18,288,102
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Rbm25
RNA binding motif protein 25
involved_in
ISO IBA
(PMID:18663000) GO_REF:0000033
RGD GO_Central
PMID:18663000
GO_REF:0000033
NCBI chr 6:103,271,775...103,319,090
Ensembl chr 6:103,271,801...103,317,854
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Rbm25l1
RNA binding motif protein 25-like 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:10,267,026...10,270,510
Ensembl chr10:10,267,260...10,269,710
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Rbm4
RNA binding motif protein 4
involved_in acts_upstream_of_or_within
ISO
(PMID:12628928), (PMID:16260624), (PMID:16777844), (PMID:16934801), (PMID:21518792) MGI:5467987|MGI:5467988 (PMID:23129807)
RGD
PMID:12628928 PMID:16260624 PMID:16777844 PMID:16934801 PMID:21518792 PMID:23129807 More...
NCBI chr 1:202,078,442...202,087,506
Ensembl chr 1:202,085,279...202,105,380
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Rbm47
RNA binding motif protein 47
involved_in
ISO
(PMID:31358901)
RGD
PMID:31358901
NCBI chr14:42,053,290...42,191,572
Ensembl chr14:42,154,142...42,189,431
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Rbm5
RNA binding motif protein 5
involved_in
ISO IEA ISS
(PMID:18840686), (PMID:18951082) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:18840686 PMID:18951082
GO_REF:0000024 GO_REF:0000107
NCBI chr 8:108,420,220...108,449,481
Ensembl chr 8:108,420,222...108,449,430
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Rbm8a
RNA binding motif protein 8A
involved_in
ISS ISO
GO_REF:0000024 (PMID:22203037)
UniProt RGD
PMID:22203037
GO_REF:0000024
NCBI chr 2:184,165,189...184,167,959
Ensembl chr 2:184,165,193...184,167,959
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Rbmx
RNA binding motif protein, X-linked
involved_in
ISO IEA
(PMID:12165565), (PMID:12761049) GO_REF:0000107
RGD Ensembl
PMID:12165565 PMID:12761049
GO_REF:0000107
NCBI chr X:135,305,237...135,314,806
Ensembl chr X:135,305,325...135,314,743
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Rbmxl1
Rbmx like 1
involved_in
IDA
PMID:19282290
UniProt
PMID:19282290
RGD:2316827
NCBI chr19:29,407,902...29,411,519
Ensembl chr19:29,407,912...29,412,859
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Rbpms
RNA binding protein, mRNA processing factor
involved_in
IMP
PMID:37548402
UniProt
PMID:37548402
RGD:401901235
NCBI chr16:58,239,370...58,395,424
Ensembl chr16:58,239,474...58,395,426
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Rbpms2
RNA binding protein, mRNA processing factor 2
involved_in
IDA
PMID:31283468
UniProt
PMID:31283468
RGD:243049249
NCBI chr 8:66,153,169...66,184,278
Ensembl chr 8:66,153,593...66,184,268
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Rest
RE1-silencing transcription factor
involved_in
ISS ISO
GO_REF:0000024 (PMID:21884984)
UniProt RGD
PMID:21884984
GO_REF:0000024
NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
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Rnps1
RNA binding protein with serine rich domain 1
involved_in
ISO ISS
(PMID:22203037) GO_REF:0000024
RGD UniProt
PMID:22203037
GO_REF:0000024
NCBI chr10:13,445,516...13,455,858
Ensembl chr10:13,445,653...13,455,858
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Sap18
Sin3A associated protein 18
involved_in
ISO
(PMID:20966198), (PMID:22203037)
RGD
PMID:20966198 PMID:22203037
NCBI chr15:31,943,228...31,947,534
Ensembl chr15:31,943,230...31,950,038 Ensembl chr10:31,943,230...31,950,038
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Smu1
SMU1, DNA replication regulator and spliceosomal factor
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 5:55,856,691...55,875,262
Ensembl chr 5:55,856,246...55,875,300
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Srrm4
serine/arginine repetitive matrix 4
involved_in acts_upstream_of_or_within
ISO
(PMID:29961578) (PMID:25727884) MGI:1856676 (PMID:23055939)
RGD
PMID:23055939 PMID:25727884 PMID:29961578
NCBI chr12:39,998,975...40,158,897
Ensembl chr12:39,999,488...40,155,725
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Srsf12
serine and arginine rich splicing factor 12
involved_in
ISO
(PMID:11684676)
RGD
PMID:11684676
NCBI chr 5:47,606,526...47,631,509
Ensembl chr 5:47,606,285...47,629,778
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Srsf19
serine and arginine rich splicing factor 19
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:45,695,314...45,741,153
Ensembl chr X:45,695,313...45,741,134
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Srsf2
serine and arginine rich splicing factor 2
acts_upstream_of_or_within involved_in
ISO IBA
(PMID:21470964) GO_REF:0000033
RGD GO_Central
PMID:21470964
GO_REF:0000033
NCBI chr10:102,052,158...102,055,365
Ensembl chr10:102,052,314...102,055,338
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Srsf6
serine and arginine rich splicing factor 6
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 (PMID:23132731) (PMID:24440982)
UniProt RGD
PMID:23132731 PMID:24440982
GO_REF:0000024
NCBI chr 3:151,589,546...151,594,869
Ensembl chr 3:151,589,535...151,594,860
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Thrap3
thyroid hormone receptor associated protein 3
involved_in
ISO ISS
(PMID:20932480) GO_REF:0000024
RGD UniProt
PMID:20932480
GO_REF:0000024
NCBI chr 5:138,445,284...138,487,544
Ensembl chr 5:138,445,295...138,487,477
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Tia1
TIA1 cytotoxic granule-associated RNA binding protein
involved_in
ISO
(PMID:14966131), (PMID:17580305) (PMID:10938105), (PMID:11514562)
RGD
PMID:10938105 PMID:11514562 PMID:14966131 PMID:17580305
NCBI chr 4:118,852,765...118,883,252
Ensembl chr 4:118,852,837...118,880,586
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Tra2b
transformer 2 beta
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:12165565), (PMID:12761049), (PMID:25689357)
UniProt Ensembl RGD
PMID:12165565 PMID:12761049 PMID:25689357
GO_REF:0000024 GO_REF:0000107
NCBI chr11:78,788,880...78,807,252
Ensembl chr11:78,788,884...78,807,249
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Wtap
WT1 associated protein
involved_in
ISO IBA
(PMID:24407421) GO_REF:0000033
RGD GO_Central
PMID:24407421
GO_REF:0000033
NCBI chr 1:47,665,965...47,691,067
Ensembl chr 1:47,665,965...47,691,065
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Ythdc1
YTH N6-methyladenosine RNA binding protein C1
involved_in acts_upstream_of_or_within
IEA ISO IBA
GO_REF:0000107 (PMID:29799838) GO_REF:0000033
Ensembl RGD GO_Central
PMID:29799838
GO_REF:0000033 GO_REF:0000107
NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028
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Zbtb7a
zinc finger and BTB domain containing 7a
involved_in
ISO ISS IEA
(PMID:24514149) GO_REF:0000024 GO_REF:0000107
RGD UniProt Ensembl
PMID:24514149
GO_REF:0000024 GO_REF:0000107
NCBI chr 7:8,561,015...8,578,243
Ensembl chr 7:8,563,779...8,576,539
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Hnrnpk
heterogeneous nuclear ribonucleoprotein K
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997
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Jmjd6
jumonji domain containing 6, arginine demethylase and lysine hydroxylase
involved_in
ISO IEA ISS
(PMID:19574390) (PMID:21300889) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:19574390 PMID:21300889
GO_REF:0000024 GO_REF:0000107
NCBI chr10:102,041,131...102,047,182
Ensembl chr10:102,041,120...102,047,182
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Khdrbs1
KH RNA binding domain containing, signal transduction associated 1
involved_in
ISO
(PMID:22196734)
RGD
PMID:22196734
NCBI chr 5:142,051,844...142,089,175
Ensembl chr 5:142,063,570...142,089,180
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Khdrbs2
KH RNA binding domain containing, signal transduction associated 2
involved_in
ISO
(PMID:22196734)
RGD
PMID:22196734
NCBI chr 9:34,447,023...34,953,684
Ensembl chr 9:34,447,056...34,915,530
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Khdrbs3
KH RNA binding domain containing, signal transduction associated 3
involved_in
IEA ISO
GO_REF:0000117 (PMID:22196734)
UniProt RGD
PMID:22196734
GO_REF:0000117
NCBI chr 7:100,837,707...100,995,644
Ensembl chr 7:100,837,934...100,988,460
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Larp7
La ribonucleoprotein 7, transcriptional regulator
involved_in
ISO ISS
(PMID:32017898) (PMID:32017896) GO_REF:0000024
RGD UniProt
PMID:32017896 PMID:32017898
GO_REF:0000024
NCBI chr 2:215,997,641...216,012,833
Ensembl chr 2:215,997,649...216,012,865
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LOC100359916
heterogeneous nuclear ribonucleoprotein K-like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 5:58,668,326...58,670,222
Ensembl chr 5:58,668,327...58,670,220
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Mettl16
methyltransferase 16, RNA N6-adenosine
involved_in NOT|involved_in
ISO
(PMID:28525753) (PMID:29262316)
RGD
PMID:28525753 PMID:29262316
NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061
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Qki
QKI, KH domain containing RNA binding
involved_in
ISS ISO IBA IEA
GO_REF:0000024 (PMID:33378678), (PMID:33397958), (PMID:36627242) (PMID:29021242) GO_REF:0000033 (PMID:27029405), (PMID:31331967) (PMID:34428287) GO_REF:0000107
UniProt RGD GO_Central Ensembl
PMID:27029405 PMID:29021242 PMID:31331967 PMID:33378678 PMID:33397958 PMID:34428287 PMID:36627242 More...
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 1:50,387,716...50,501,568
Ensembl chr 1:50,387,698...50,498,831
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Rbm20
RNA binding motif protein 20
involved_in
ISO
(PMID:26604136), (PMID:27496873), (PMID:30948719), (PMID:32840935) (PMID:33188278)
RGD
PMID:26604136 PMID:27496873 PMID:30948719 PMID:32840935 PMID:33188278
NCBI chr 1:252,683,760...252,907,465
Ensembl chr 1:252,683,771...252,886,060
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Rbm39
RNA binding motif protein 39
involved_in
ISO
(PMID:15694343), (PMID:28302793), (PMID:28437394)
RGD
PMID:15694343 PMID:28302793 PMID:28437394
NCBI chr 3:144,662,998...144,696,222
Ensembl chr 3:144,663,001...144,696,213
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Sf1
splicing factor 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:203,670,016...203,683,432
Ensembl chr 1:203,670,018...203,684,330
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Son
SON DNA and RNA binding protein
involved_in
ISO IBA
(PMID:21504830) GO_REF:0000033
RGD GO_Central
PMID:21504830
GO_REF:0000033
NCBI chr11:30,850,890...30,923,167
Ensembl chr11:30,892,005...30,923,167
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Srrm1
serine and arginine repetitive matrix 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 5:147,559,515...147,591,895
Ensembl chr 5:147,559,514...147,591,849
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Srsf10
serine and arginine rich splicing factor 10
involved_in
ISO
(PMID:26876937)
RGD
PMID:26876937
NCBI chr 5:148,088,759...148,102,964
Ensembl chr 5:148,088,823...148,101,768
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Srsf3
serine and arginine rich splicing factor 3
involved_in
ISO
(PMID:26876937), (PMID:32440474)
RGD
PMID:26876937 PMID:32440474
NCBI chr20:7,091,928...7,101,860
Ensembl chr20:7,091,910...7,101,078
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Tia1
TIA1 cytotoxic granule-associated RNA binding protein
involved_in
ISO
(PMID:11106748), (PMID:7488725)
RGD
PMID:7488725 PMID:11106748
NCBI chr 4:118,852,765...118,883,252
Ensembl chr 4:118,852,837...118,880,586
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Ythdc1
YTH N6-methyladenosine RNA binding protein C1
involved_in
ISO ISS
(PMID:26876937), (PMID:28984244) GO_REF:0000024
RGD UniProt
PMID:26876937 PMID:28984244
GO_REF:0000024
NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028
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Crnkl1
crooked neck pre-mRNA splicing factor 1
involved_in
ISO IBA ISS
(PMID:12084575) GO_REF:0000033 GO_REF:0000024
RGD GO_Central UniProt
PMID:12084575
GO_REF:0000024 GO_REF:0000033
NCBI chr 3:133,338,593...133,354,329
Ensembl chr 3:133,337,039...133,354,302 Ensembl chr 6:133,337,039...133,354,302
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Ddx39b
DExD-box helicase 39B
involved_in
ISO IEA
(PMID:18593880) GO_REF:0000107
RGD Ensembl
PMID:18593880
GO_REF:0000107
NCBI chr20:3,547,702...3,585,064
Ensembl chr20:3,572,056...3,584,996
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Gcfc2
GC-rich sequence DNA-binding factor 2
involved_in
ISO
(PMID:24304693)
RGD
PMID:24304693
NCBI chr 4:114,481,613...114,519,268
Ensembl chr 4:114,481,607...114,519,962
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Gemin2
gem (nuclear organelle) associated protein 2
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 6:76,706,424...76,721,154
Ensembl chr 6:76,707,523...76,721,153
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Gemin6
gem (nuclear organelle) associated protein 6
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 6:14,786,090...14,790,617
Ensembl chr 6:14,786,070...14,790,612
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Ncbp1
nuclear cap binding protein subunit 1
involved_in
ISO
(PMID:23793891)
RGD
PMID:23793891
NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089
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Prpf19
pre-mRNA processing factor 19
involved_in
ISO IEA
(PMID:16332694) GO_REF:0000107
RGD Ensembl
PMID:16332694
GO_REF:0000107
NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
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Rbm5
RNA binding motif protein 5
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:18951082)
UniProt Ensembl RGD
PMID:18951082
GO_REF:0000024 GO_REF:0000107
NCBI chr 8:108,420,220...108,449,481
Ensembl chr 8:108,420,222...108,449,430
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Rsrp1
arginine and serine rich protein 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:34042961)
UniProt RGD
PMID:34042961
GO_REF:0000024
NCBI chr 5:147,147,774...147,151,523
Ensembl chr 5:147,147,784...147,151,523
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Scaf11
SR-related CTD-associated factor 11
involved_in
ISO IBA
(PMID:9447963) GO_REF:0000033
RGD GO_Central
PMID:9447963
GO_REF:0000033
NCBI chr 7:127,571,678...127,624,089
Ensembl chr 7:127,574,463...127,624,101
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Sf3a2
splicing factor 3A subunit 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530
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Sf3b1
splicing factor 3b, subunit 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300
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Smn1
survival of motor neuron 1, telomeric
involved_in
ISO
(PMID:9845364)
RGD
PMID:9845364
NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060
G
Srpk1
SRSF protein kinase 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr20:6,645,809...6,682,448
Ensembl chr20:6,645,809...6,682,134
G
Srpk2
SRSF protein kinase 2
involved_in
ISO IBA
(PMID:9472028) (PMID:9446799) GO_REF:0000033
RGD GO_Central
PMID:9446799 PMID:9472028
GO_REF:0000033
NCBI chr 4:11,464,684...11,655,993
Ensembl chr 4:11,464,674...11,655,990
G
Srpk3
SRSF protein kinase 3
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:151,510,452...151,515,208
Ensembl chr X:151,510,539...151,515,198
G
U2af2
U2 small nuclear RNA auxiliary factor 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:68,760,911...68,779,730
Ensembl chr 1:68,760,924...68,778,492
G
Usp39
ubiquitin specific peptidase 39
involved_in
ISO IBA
(PMID:11350945) GO_REF:0000033
RGD GO_Central
PMID:11350945
GO_REF:0000033
NCBI chr 4:104,373,948...104,406,359
Ensembl chr 4:104,373,955...104,406,359
G
Zrsr2
zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2
involved_in
ISO
(PMID:21041408)
RGD
PMID:21041408
NCBI chr X:30,547,424...30,571,613
Ensembl chr X:30,547,536...30,570,125
G
Dnajc17
DnaJ heat shock protein family (Hsp40) member C17
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:106,162,197...106,195,771
Ensembl chr 3:106,162,197...106,195,751
G
Tfip11
tuftelin interacting protein 11
involved_in
ISO IBA IEA ISS
(PMID:19103666) (PMID:19857462) GO_REF:0000033 GO_REF:0000002 GO_REF:0000024
RGD GO_Central InterPro UniProt
PMID:19103666 PMID:19857462
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033
NCBI chr12:44,299,619...44,311,851
Ensembl chr12:44,299,622...44,311,855
G
AABR07042226.1
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
Ensembl chr X:144,806,986...144,812,552
G
Clns1a
chloride nucleotide-sensitive channel 1A
involved_in
ISS IBA IEA ISO
GO_REF:0000024 GO_REF:0000033 GO_REF:0000002 (PMID:18984161)
UniProt GO_Central InterPro RGD
PMID:18984161
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033
NCBI chr 1:152,019,369...152,039,670
Ensembl chr 1:152,019,378...152,039,661
G
Coil
coilin
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:73,789,077...73,810,378
Ensembl chr10:73,789,488...73,810,393
G
Ddx20
DEAD-box helicase 20
involved_in
ISO IBA
(PMID:12067652), (PMID:18984161) GO_REF:0000033
RGD GO_Central
PMID:12067652 PMID:18984161
GO_REF:0000033
NCBI chr 2:193,158,761...193,168,484
Ensembl chr 2:193,158,823...193,166,774
G
ENSRNOG00000063060
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 6:84,273,587...84,274,496
G
ENSRNOG00000063333
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
Ensembl chr X:93,293,758...93,294,114
G
ENSRNOG00000064062
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
Ensembl chr19:33,454,456...33,455,388
G
ENSRNOG00000066758
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
Ensembl chr X:14,995,412...14,996,454
G
ENSRNOG00000068015
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr X:133,878,251...133,878,959
G
ENSRNOG00000068876
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 9:112,301,511...112,302,585
G
Gemin2
gem (nuclear organelle) associated protein 2
involved_in
ISS IBA ISO
GO_REF:0000024 GO_REF:0000033 (PMID:12067652), (PMID:18984161), (PMID:31799625)
UniProt GO_Central RGD
PMID:12067652 PMID:18984161 PMID:31799625
GO_REF:0000024 GO_REF:0000033
NCBI chr 6:76,706,424...76,721,154
Ensembl chr 6:76,707,523...76,721,153
G
Gemin4
gem (nuclear organelle) associated protein 4
involved_in
ISO IBA
(PMID:12067652), (PMID:18984161) GO_REF:0000033
RGD GO_Central
PMID:12067652 PMID:18984161
GO_REF:0000033
NCBI chr10:61,062,420...61,073,529
Ensembl chr10:61,066,425...61,073,431 Ensembl chr10:61,066,425...61,073,431
G
Gemin5
gem (nuclear organelle) associated protein 5
involved_in
ISO IBA
(PMID:12067652), (PMID:18984161) GO_REF:0000033
RGD GO_Central
PMID:12067652 PMID:18984161
GO_REF:0000033
NCBI chr10:42,295,729...42,342,902
Ensembl chr10:42,297,515...42,342,892
G
Gemin6
gem (nuclear organelle) associated protein 6
involved_in
ISO IBA
(PMID:12067652), (PMID:18984161) GO_REF:0000033
RGD GO_Central
PMID:12067652 PMID:18984161
GO_REF:0000033
NCBI chr 6:14,786,090...14,790,617
Ensembl chr 6:14,786,070...14,790,612
G
Gemin7
gem (nuclear organelle) associated protein 7
involved_in
ISO IBA
(PMID:12067652), (PMID:18984161) GO_REF:0000033
RGD GO_Central
PMID:12067652 PMID:18984161
GO_REF:0000033
NCBI chr 1:79,215,054...79,228,769
Ensembl chr 1:79,214,919...79,224,994
G
Gemin7l1
gem (nuclear organelle) associated protein 7-like 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:78,269,910...78,270,681
Ensembl chr 4:78,269,888...78,270,669
G
Gemin8
gem (nuclear organelle) associated protein 8
involved_in
ISO IBA
(PMID:12067652), (PMID:16434402), (PMID:18984161) GO_REF:0000033
RGD GO_Central
PMID:12067652 PMID:16434402 PMID:18984161
GO_REF:0000033
NCBI chr X:28,259,806...28,278,641
Ensembl chr X:28,259,793...28,278,663
G
Glod4
glyoxalase domain containing 4
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:61,077,535...61,095,876
Ensembl chr10:61,066,421...61,095,898
G
LOC108350623
small nuclear ribonucleoprotein F-like
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 3:155,116,497...155,116,945
G
LOC108352309
small nuclear ribonucleoprotein F-like
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr11:33,533,614...33,533,927
Ensembl chr11:33,533,512...33,533,871
G
LOC120099250
U1 small nuclear ribonucleoprotein C-like
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr X:135,673,708...135,678,865
G
LOC120100604
small nuclear ribonucleoprotein G-like
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr 2:186,400,521...186,402,953
Ensembl chr 2:186,400,857...186,401,087
G
Lsm4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr16:18,755,481...18,761,106
Ensembl chr16:18,755,484...18,760,926
G
Prmt5
protein arginine methyltransferase 5
involved_in
ISO
(PMID:17709427)
RGD
PMID:17709427
NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296
G
Prmt7
protein arginine methyltransferase 7
involved_in
ISO IEA ISS
(PMID:17709427) GO_REF:0000104 GO_REF:0000024
RGD UniProt
PMID:17709427
GO_REF:0000024 GO_REF:0000104
NCBI chr19:34,110,724...34,161,531
Ensembl chr19:34,110,747...34,162,577
G
Prpf4b
pre-mRNA processing factor 4B
involved_in
ISS ISO
GO_REF:0000024 (PMID:12077342)
UniProt RGD
PMID:12077342
GO_REF:0000024
NCBI chr17:29,985,343...30,020,285
Ensembl chr17:29,985,343...30,019,625
G
Sart3
spliceosome associated factor 3, U4/U6 recycling protein
involved_in NOT|involved_in
ISO
(PMID:14749385), (PMID:15314151) (PMID:15314151)
RGD
PMID:14749385 PMID:15314151
NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038
G
Smn1
survival of motor neuron 1, telomeric
involved_in
ISS IBA ISO
GO_REF:0000024 GO_REF:0000033 (PMID:12067652), (PMID:18984161)
UniProt GO_Central RGD
PMID:12067652 PMID:18984161
GO_REF:0000024 GO_REF:0000033
NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060
G
Snrpb
small nuclear ribonucleoprotein polypeptides B and B1
involved_in
ISO ISS
(PMID:18984161) GO_REF:0000024
RGD UniProt
PMID:18984161
GO_REF:0000024
NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339
G
Snrpc
small nuclear ribonucleoprotein polypeptide C
involved_in
ISO IEA
(PMID:8972845) GO_REF:0000104
RGD UniProt
PMID:8972845
GO_REF:0000104
NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638
G
Snrpd1
small nuclear ribonucleoprotein D1 polypeptide
involved_in
ISO IBA
(PMID:18984161) GO_REF:0000033
RGD GO_Central
PMID:18984161
GO_REF:0000033
NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256
G
Snrpd2
small nuclear ribonucleoprotein D2 polypeptide
involved_in
ISO IBA
(PMID:18984161) GO_REF:0000033
RGD GO_Central
PMID:18984161
GO_REF:0000033
NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351
G
Snrpd3
small nuclear ribonucleoprotein D3 polypeptide
involved_in
ISO IBA
(PMID:18984161) GO_REF:0000033
RGD GO_Central
PMID:18984161
GO_REF:0000033
NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978
G
Snrpd3l1
small nuclear ribonucleoprotein D3 polypeptide like 1
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr19:12,396,026...12,396,454
Ensembl chr19:12,396,026...12,396,454
G
Snrpe
small nuclear ribonucleoprotein polypeptide E
involved_in
ISO IBA
(PMID:18984161) GO_REF:0000033
RGD GO_Central
PMID:18984161
GO_REF:0000033
NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310 Ensembl chr 8:45,050,986...45,057,310
G
Snrpepl2
small nuclear ribonucleoprotein polypeptide E like 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:133,709,656...133,710,137
Ensembl chr 1:133,709,797...133,710,075
G
Snrpf
small nuclear ribonucleoprotein polypeptide F
involved_in
ISO
(PMID:18984161)
RGD
PMID:18984161
NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129
G
Snrpg
small nuclear ribonucleoprotein polypeptide G
involved_in
ISO
(PMID:18984161)
RGD
PMID:18984161
NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826
G
Strap
serine/threonine kinase receptor associated protein
involved_in
ISS IBA ISO
GO_REF:0000024 GO_REF:0000033 (PMID:12067652), (PMID:18984161)
UniProt GO_Central RGD
PMID:12067652 PMID:18984161
GO_REF:0000024 GO_REF:0000033
NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828
G
Tdrd6
tudor domain containing 6
involved_in
ISO
(PMID:28263986)
RGD
PMID:28263986
NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344
G
Tssc4
tumor suppressing subtransferable candidate 4
involved_in
ISO ISS
(PMID:35188580) GO_REF:0000024
RGD UniProt
PMID:35188580
GO_REF:0000024
NCBI chr 1:198,251,986...198,254,810
Ensembl chr 1:198,235,487...198,254,980
G
Zfp341
zinc finger protein 341
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:143,122,699...143,156,250
Ensembl chr 3:143,119,093...143,156,249
G
Aar2
AAR2 splicing factor
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:145,057,368...145,079,838
Ensembl chr 3:145,057,458...145,080,166
G
Linc00176
long intergenic non-protein coding RNA 176
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 3:168,771,350...168,775,133
Ensembl chr 3:168,704,299...168,774,991
G
Lsm2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
acts_upstream_of_or_within
ISO
(PMID:10523320)
RGD
PMID:10523320
NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266
G
Prpf19
pre-mRNA processing factor 19
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:20595234)
UniProt Ensembl RGD
PMID:20595234
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
G
Prpf3
pre-mRNA processing factor 3
involved_in
ISO
(PMID:20595234)
RGD
PMID:20595234
NCBI chr 2:183,379,041...183,403,526
Ensembl chr 2:183,378,718...183,403,489
G
Prpf31
pre-mRNA processing factor 31
acts_upstream_of_or_within involved_in
ISO
(PMID:11867543) (PMID:15257298), (PMID:20118938)
RGD
PMID:11867543 PMID:15257298 PMID:20118938
NCBI chr 1:65,575,887...65,587,561
Ensembl chr 1:65,575,887...65,587,873
G
Prpf4b
pre-mRNA processing factor 4B
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:20118938) GO_REF:0000024
Ensembl RGD UniProt
PMID:20118938
GO_REF:0000024 GO_REF:0000107
NCBI chr17:29,985,343...30,020,285
Ensembl chr17:29,985,343...30,019,625
G
Prpf6
pre-mRNA processing factor 6
involved_in
IEA ISO ISS IBA
GO_REF:0000107 (PMID:15257298), (PMID:20118938) GO_REF:0000024 GO_REF:0000033
Ensembl RGD UniProt GO_Central
PMID:15257298 PMID:20118938
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991
G
Prpf8
pre-mRNA processing factor 8
involved_in
ISO IBA
(PMID:20595234) GO_REF:0000033
RGD GO_Central
PMID:20595234
GO_REF:0000033
NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606
G
Sart3
spliceosome associated factor 3, U4/U6 recycling protein
involved_in
ISO
(PMID:12032085), (PMID:20595234)
RGD
PMID:12032085 PMID:20595234
NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038
G
Tssc4
tumor suppressing subtransferable candidate 4
involved_in
ISO IEA ISS
(PMID:34131137) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:34131137
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:198,251,986...198,254,810
Ensembl chr 1:198,235,487...198,254,980
G
Usp4
ubiquitin specific peptidase 4
involved_in
ISS ISO
GO_REF:0000024 (PMID:20595234)
UniProt RGD
PMID:20595234
GO_REF:0000024
NCBI chr 8:109,035,402...109,079,382
Ensembl chr 8:109,036,099...109,080,427
G
Snrnp200
small nuclear ribonucleoprotein U5 subunit 200
involved_in
ISO IBA IEA
(PMID:35241646) GO_REF:0000033 GO_REF:0000107
RGD GO_Central Ensembl
PMID:35241646
GO_REF:0000033 GO_REF:0000107
NCBI chr 3:114,428,854...114,458,194
Ensembl chr 3:114,428,854...114,458,182
G
Ilf3
interleukin enhancer binding factor 3
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:28625552)
UniProt Ensembl RGD
PMID:28625552
GO_REF:0000024 GO_REF:0000107
NCBI chr 8:19,922,409...19,960,495
Ensembl chr 8:19,922,460...19,960,350
G
Qki
QKI, KH domain containing RNA binding
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:37272356) GO_REF:0000107 (PMID:25768908)
UniProt RGD Ensembl
PMID:25768908 PMID:37272356
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:50,387,716...50,501,568
Ensembl chr 1:50,387,698...50,498,831
G
Rbm20
RNA binding motif protein 20
involved_in
ISO
(PMID:27531932) (PMID:37272356)
RGD
PMID:27531932 PMID:37272356
NCBI chr 1:252,683,760...252,907,465
Ensembl chr 1:252,683,771...252,886,060
G
Ddx42
DEAD-box helicase 42
involved_in
ISO
(PMID:36797247)
RGD
PMID:36797247
NCBI chr10:91,148,926...91,180,940
Ensembl chr10:91,148,254...91,180,939
G
Ddx46
DEAD-box helicase 46
involved_in
ISS ISO
GO_REF:0000024 (PMID:36797247)
UniProt RGD
PMID:36797247
GO_REF:0000024
NCBI chr17:8,942,070...8,988,440
Ensembl chr17:8,944,454...8,988,439
G
Htatsf1
HIV-1 Tat specific factor 1
involved_in
ISO
(PMID:32494006), (PMID:34822310)
RGD
PMID:32494006 PMID:34822310
NCBI chr X:134,935,426...134,949,607
Ensembl chr X:134,935,426...134,949,607
G
Sf3a1
splicing factor 3A subunit 1
involved_in
ISO
(PMID:10882114), (PMID:11533230)
RGD
PMID:10882114 PMID:11533230
NCBI chr14:79,031,394...79,052,144
Ensembl chr14:79,031,394...79,052,144
G
Sf3a2
splicing factor 3A subunit 2
involved_in
ISO ISS
(PMID:11533230) GO_REF:0000024
RGD UniProt
PMID:11533230
GO_REF:0000024
NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530
G
Sf3a3
splicing factor 3a, subunit 3
involved_in
ISO
(PMID:11533230)
RGD
PMID:11533230
NCBI chr 5:136,967,713...136,987,345
Ensembl chr 5:136,967,691...136,987,361
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all
Path 1
biological_process
20217
cellular process
19275
metabolic process
12045
primary metabolic process
10671
RNA processing
971
mRNA processing
486
mRNA splicing, via spliceosome
322
alternative mRNA splicing, via spliceosome +
80
mRNA cis splicing, via spliceosome +
29
mRNA trans splicing, via spliceosome +
0
negative regulation of mRNA splicing, via spliceosome +
25
positive regulation of mRNA splicing, via spliceosome +
33
regulation of mRNA splicing, via spliceosome +
114
spliceosomal complex assembly +
55
spliceosomal complex disassembly
2
spliceosomal conformational changes to generate catalytic conformation +
6
spliceosomal snRNP assembly +
51
spliceosome-depend formation of circular RNA
3
Path 2
biological_process
20217
cellular process
19275
metabolic process
12045
primary metabolic process
10671
nucleobase-containing compound metabolic process
5846
nucleobase-containing compound biosynthetic process
4775
nucleic acid biosynthetic process
4498
RNA biosynthetic process
4381
RNA processing
971
RNA splicing
442
RNA splicing, via transesterification reactions
322
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
322
mRNA splicing, via spliceosome
322
alternative mRNA splicing, via spliceosome +
80
mRNA cis splicing, via spliceosome +
29
mRNA trans splicing, via spliceosome +
0
negative regulation of mRNA splicing, via spliceosome +
25
positive regulation of mRNA splicing, via spliceosome +
33
regulation of mRNA splicing, via spliceosome +
114
spliceosomal complex assembly +
55
spliceosomal complex disassembly
2
spliceosomal conformational changes to generate catalytic conformation +
6
spliceosomal snRNP assembly +
51
spliceosome-depend formation of circular RNA
3