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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA cap binding
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Accession:GO:0000339 term browser browse the term
Definition:Binding to a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule.
Synonyms:narrow_synonym: binding to mRNA cap;   mRNA cap binding;   snRNA cap binding


show annotations for term's descendants           Sort by:
RNA cap binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Larp1 La ribonucleoprotein 1, translational regulator enables ISO
IEA 		(PMID:24532714)
GO_REF:0000107
GO_REF:0000002 		RGD
Ensembl
InterPro		 PMID:24532714 GO_REF:0000002 GO_REF:0000107 NCBI chr10:42,691,833...42,746,816
Ensembl chr10:42,191,325...42,243,371 		JBrowse link
G Larp1bl La ribonucleoprotein 1B like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:123,969,408...124,031,645
Ensembl chr 2:124,008,367...124,030,654 		JBrowse link
G Mcts1 MCTS1, re-initiation and release factor enables ISS
ISO 		GO_REF:0000024
(PMID:16982740) 		UniProt
RGD		 PMID:16982740 GO_REF:0000024 NCBI chr  X:122,215,602...122,228,101
Ensembl chr  X:117,350,889...117,362,504 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 enables IEA
IBA 		GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 enables IEA
IBA 		GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr11:82,326,002...82,334,839
Ensembl chr11:68,817,740...68,851,885 		JBrowse link
G Ncbp3 nuclear cap binding subunit 3 enables IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:26382858) 		GO_Central
Ensembl
RGD		 PMID:26382858 GO_REF:0000033 GO_REF:0000107 NCBI chr10:57,665,716...57,695,432
Ensembl chr10:57,665,716...57,695,432 		JBrowse link
G Snupn snurportin 1 TAS RGD PMID:10209022 RGD:1331354 NCBI chr 8:57,347,412...57,388,345
Ensembl chr 8:57,348,130...57,380,912 		JBrowse link
mRNA cap binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 enables ISS
ISO
IEA 		GO_REF:0000024
CHEBI:10596 (PMID:17524464), (PMID:23409027)
GO_REF:0000104
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:17524464 PMID:23409027 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107 NCBI chr 7:106,907,209...106,994,124
Ensembl chr 7:105,029,120...105,104,974 		JBrowse link
G Eif3d eukaryotic translation initiation factor 3, subunit D enables ISO
ISS
IEA 		(PMID:27462815)
GO_REF:0000024
GO_REF:0000104
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:27462815 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107 NCBI chr 7:109,539,795...109,552,184
Ensembl chr 7:109,539,356...109,552,206 		JBrowse link
G Eif4e eukaryotic translation initiation factor 4E enables ISS
ISO 		GO_REF:0000024
(PMID:16271312)
(PMID:11500381) 		UniProt
RGD		 PMID:11500381 PMID:16271312 GO_REF:0000024 NCBI chr 2:229,736,309...229,772,628
Ensembl chr 2:227,066,673...227,098,683 		JBrowse link
G Eif4e2 eukaryotic translation initiation factor 4E family member 2 enables ISO
IEA 		(PMID:17368478)
GO_REF:0000107 		RGD
Ensembl		 PMID:17368478 GO_REF:0000107 NCBI chr 9:95,333,439...95,362,366
Ensembl chr 9:87,878,085...87,914,482 		JBrowse link
RNA 7-methylguanosine cap binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 enables ISO
IEA
ISS 		(PMID:17524464)
GO_REF:0000107
GO_REF:0000024
GO_REF:0000104 		RGD
Ensembl
UniProt		 PMID:17524464 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107 NCBI chr 7:106,907,209...106,994,124
Ensembl chr 7:105,029,120...105,104,974 		JBrowse link
G Cyfip1 cytoplasmic FMR1 interacting protein 1 enables IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:25453757 GO_REF:0000033, RGD:11558007 NCBI chr 1:106,710,924...106,799,393
Ensembl chr 1:106,711,016...106,799,386 		JBrowse link
G Cyfip2 cytoplasmic FMR1 interacting protein 2 NOT|enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:30,621,318...30,741,113
Ensembl chr10:30,621,318...30,741,113 		JBrowse link
G Dcps decapping enzyme, scavenger enables ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
GO_REF:0000104
(PMID:12198172), (PMID:15383679), (PMID:18426921), (PMID:18441014), (PMID:22985415) 		UniProt
Ensembl
GO_Central
RGD		 PMID:12198172 PMID:15383679 PMID:18426921 PMID:18441014 PMID:22985415 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr 8:33,468,669...33,524,407
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
G Eif4e eukaryotic translation initiation factor 4E enables ISO
IBA
ISS 		(PMID:19750007)
GO_REF:0000033
GO_REF:0000024 		RGD
GO_Central
UniProt		 PMID:19750007 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:229,736,309...229,772,628
Ensembl chr 2:227,066,673...227,098,683 		JBrowse link
G Eif4e1b eukaryotic translation initiation factor 4E family member 1B enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:9,831,338...9,856,250
Ensembl chr17:9,832,230...9,835,137 		JBrowse link
G Eif4e2 eukaryotic translation initiation factor 4E family member 2 enables ISO
IEA 		(PMID:35878012)
GO_REF:0000107 		RGD
Ensembl		 PMID:35878012 GO_REF:0000107 NCBI chr 9:95,333,439...95,362,366
Ensembl chr 9:87,878,085...87,914,482 		JBrowse link
G ENSRNOG00000068600 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 2:136,282,917...136,284,328 JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 IDA RGD PMID:25453757 RGD:11558007 NCBI chr  X:152,284,857...152,322,686
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Gemin5 gem (nuclear organelle) associated protein 5 enables ISO
IEA 		(PMID:19750007), (PMID:27881600), (PMID:27881601)
GO_REF:0000107 		RGD
Ensembl		 PMID:19750007 PMID:27881600 PMID:27881601 GO_REF:0000107 NCBI chr10:42,797,975...42,843,356
Ensembl chr10:42,297,515...42,342,892 		JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator enables ISO
IEA 		(PMID:28379136)
GO_REF:0000107 		RGD
Ensembl		 PMID:28379136 GO_REF:0000107 NCBI chr10:42,691,833...42,746,816
Ensembl chr10:42,191,325...42,243,371 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 enables IC
IEA
ISO 		GO_REF:0000107
(PMID:23793891) 		Ensembl
RGD		 PMID:23793891 PMID:9933612 GO_REF:0000107, RGD:9684949 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 enables IDA
IEA
ISS
ISO 		GO_REF:0000107
GO_REF:0000024
(PMID:12434151), (PMID:18426921), (PMID:23793891) 		Ensembl
UniProt
RGD		 PMID:12434151 PMID:18426921 PMID:23793891 PMID:9933612 GO_REF:0000024 GO_REF:0000107, RGD:9684949 NCBI chr11:82,326,002...82,334,839
Ensembl chr11:68,817,740...68,851,885 		JBrowse link
G Ncbp3 nuclear cap binding subunit 3 enables ISO
IEA 		(PMID:26382858)
GO_REF:0000107
GO_REF:0000002 		RGD
Ensembl
InterPro		 PMID:26382858 GO_REF:0000002 GO_REF:0000107 NCBI chr10:57,665,716...57,695,432
Ensembl chr10:57,665,716...57,695,432 		JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 enables IEA GO_REF:0000104
GO_REF:0000107 		UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr 8:41,673,510...41,723,158
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21054
    binding 18050
      nucleic acid binding 3928
        RNA binding 1645
          RNA cap binding 19
            RNA 7-methylguanosine cap binding 15
            RNA cap 4 binding 0
            RNA trimethylguanosine cap binding 0
            mRNA cap binding 4
paths to the root