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ONTOLOGY REPORT - ANNOTATIONS

Term:nuclear chromosome
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Accession:GO:0000228 term browser browse the term
Definition:A chromosome that encodes the nuclear genome and is found in the nucleus of a eukaryotic cell during the cell cycle phases when the nucleus is intact.
Synonyms:narrow_synonym: nuclear interphase chromosome

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nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atrx ATRX chromatin remodeler located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936683:2,496,307...2,718,539
Ensembl chrNW_004936683:2,495,959...2,718,620 		JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain 1A located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936494:8,968,704...9,080,620
Ensembl chrNW_004936494:8,968,704...9,080,620 		JBrowse link
G Birc5 baculoviral IAP repeat containing 5 located_in ISO (PMID:16322459) UniProt PMID:16322459 NCBI chrNW_004936594:2,812,165...2,820,618
Ensembl chrNW_004936594:2,812,238...2,820,636 		JBrowse link
G Blm BLM RecQ like helicase located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905 		JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 is_active_in
located_in		 ISO
IEA		 (PMID:9326634) GO_Central
Ensembl		 PMID:9326634 GO_REF:0000107 NCBI chrNW_004936523:4,945,650...5,016,209
Ensembl chrNW_004936523:4,945,650...5,018,145 		JBrowse link
G E2f1 E2F transcription factor 1 located_in ISO PMID:24250814 UniProt PMID:24250814 RGD:151356618 NCBI chrNW_004936561:6,894,827...6,901,058
Ensembl chrNW_004936561:6,896,063...6,900,026 		JBrowse link
G Exosc9 exosome component 9 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936662:1,062,461...1,073,425
Ensembl chrNW_004936662:1,062,527...1,074,772 		JBrowse link
G Fignl1 fidgetin like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936686:1,412,544...1,415,939
Ensembl chrNW_004936686:1,413,218...1,415,248 		JBrowse link
G Gins2 GINS complex subunit 2 located_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936641:2,757,150...2,775,904
Ensembl chrNW_004936641:2,757,150...2,776,681 		JBrowse link
G Hcfc1 host cell factor C1 located_in ISO PMID:24250814 UniProt PMID:24250814 RGD:151356618 NCBI chrNW_004936809:827,008...853,689
Ensembl chrNW_004936809:827,031...853,644 		JBrowse link
G Hmga2 high mobility group AT-hook 2 located_in ISO (PMID:11555636) MGI PMID:11555636 NCBI chrNW_004936545:3,944,419...3,958,289
Ensembl chrNW_004936545:3,944,419...4,064,193 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U located_in ISO (PMID:11003645) UniProt PMID:11003645 NCBI chrNW_004936526:6,014,745...6,022,213 JBrowse link
G Ik IK cytokine located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936531:9,589,035...9,601,266
Ensembl chrNW_004936531:9,588,555...9,601,293 		JBrowse link
G LOC101971629 core histone macro-H2A.1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352
Ensembl chrNW_004936597:2,495,862...2,556,603 		JBrowse link
G Ncapd2 non-SMC condensin I complex subunit D2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:1,250,442...1,275,823
Ensembl chrNW_004936709:1,250,495...1,275,769 		JBrowse link
G Pinx1 PIN2 (TERF1) interacting telomerase inhibitor 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936675:2,641,851...2,706,201
Ensembl chrNW_004936675:2,640,068...2,706,238 		JBrowse link
G Rad51 RAD51 recombinase located_in ISO (PMID:23754376) UniProt PMID:23754376 NCBI chrNW_004936471:4,119,020...4,136,811
Ensembl chrNW_004936471:4,114,530...4,136,248 		JBrowse link
G Setx senataxin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:18,858,384...18,945,253
Ensembl chrNW_004936487:18,855,744...18,944,158 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 located_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936619:1,276,239...1,308,945
Ensembl chrNW_004936619:1,275,362...1,308,913 		JBrowse link
G Smc2 structural maintenance of chromosomes 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936793:909,663...958,883
Ensembl chrNW_004936793:910,654...958,811 		JBrowse link
G Spidr scaffold protein involved in DNA repair located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936590:4,921,755...5,041,573
Ensembl chrNW_004936590:4,921,542...5,316,195 		JBrowse link
G Spo11 SPO11 initiator of meiotic double strand breaks located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936530:183,271...197,549
Ensembl chrNW_004936530:183,271...197,335 		JBrowse link
G Top1 DNA topoisomerase I located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:641,451...723,323
Ensembl chrNW_004936561:641,423...723,518 		JBrowse link
G Top2a DNA topoisomerase II alpha located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,441,463...15,465,692
Ensembl chrNW_004936490:15,441,575...15,466,978 		JBrowse link
G Zbtb32 zinc finger and BTB domain containing 32 located_in ISO (PMID:11555636) MGI PMID:11555636 NCBI chrNW_004936570:606,087...615,473 JBrowse link
alpha DNA polymerase:primase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit part_of ISO
IEA		 RGD
TreeGrafter		 PMID:7670930 GO_REF:0000118 RGD:1580605 NCBI chrNW_004936836:1,151...287,438 JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:4,105,365...4,132,079
Ensembl chrNW_004936599:4,105,301...4,132,054 		JBrowse link
G Prim1 DNA primase subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,033,921...1,054,203
Ensembl chrNW_004936646:1,036,777...1,054,108 		JBrowse link
G Prim2 DNA primase subunit 2 part_of IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004936476:3,736,663...3,997,936
Ensembl chrNW_004936476:3,737,061...3,996,910 		JBrowse link
Barr body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101956559 core histone macro-H2A.2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:8,474,408...8,509,269
Ensembl chrNW_004936521:8,473,794...8,509,268 		JBrowse link
G LOC101963041 histone H3.3A located_in ISO (PMID:15657431) MGI PMID:15657431 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101971629 core histone macro-H2A.1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352
Ensembl chrNW_004936597:2,495,862...2,556,603 		JBrowse link
G LOC101974663 histone H2A.Z NOT|located_in ISO (PMID:11331621) MGI PMID:11331621 NCBI chrNW_004936520:3,059,623...3,061,941 JBrowse link
G Lrif1 ligand dependent nuclear receptor interacting factor 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936704:2,313,923...2,334,839
Ensembl chrNW_004936704:2,319,145...2,333,400 		JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936672:1,686,070...1,838,315
Ensembl chrNW_004936672:1,685,734...1,838,315 		JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUNH14orf39 chromosome unknown C14orf39 homolog located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936495:4,660,616...4,695,338
Ensembl chrNW_004936495:4,660,641...4,694,402 		JBrowse link
G Incenp inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:999,148...1,028,157
Ensembl chrNW_004936581:999,497...1,025,062 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:19,723,354...19,731,175
Ensembl chrNW_004936486:19,723,627...19,727,770 		JBrowse link
G Syce2 synaptonemal complex central element protein 2 located_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936659:1,962,055...1,978,743
Ensembl chrNW_004936659:1,961,243...1,978,743 		JBrowse link
G Syce3 synaptonemal complex central element protein 3 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936629:264,077...281,119
Ensembl chrNW_004936629:264,077...281,119 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (PMID:12584241), (PMID:23133398) MGI PMID:12584241 PMID:23133398 NCBI chrNW_004936627:239,232...365,062 JBrowse link
G Tex11 testis expressed 11 located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936762:681,962...969,749
Ensembl chrNW_004936762:681,130...969,455 		JBrowse link
G Tex12 testis expressed 12 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936612:2,297,754...2,303,130 JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hus1 HUS1 checkpoint clamp component part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936478:22,393,952...22,414,349
Ensembl chrNW_004936478:22,400,111...22,414,115 		JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936518:6,620,325...6,626,328
Ensembl chrNW_004936518:6,620,325...6,628,393 		JBrowse link
G Rad9a RAD9 checkpoint clamp component A part_of IEA Ensembl
InterPro
UniProt
TreeGrafter		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:2,348,869...2,353,907
Ensembl chrNW_004936599:2,345,646...2,354,029 		JBrowse link
G Rad9b RAD9 checkpoint clamp component B part_of IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936558:3,462,187...3,489,741
Ensembl chrNW_004936558:3,459,223...3,489,413 		JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736 		JBrowse link
G Mlh3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:4,164,322...4,195,408
Ensembl chrNW_004936488:4,164,918...4,195,517 		JBrowse link
CMG complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc45 cell division cycle 45 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:3,420,110...3,452,419
Ensembl chrNW_004936619:3,420,191...3,452,436 		JBrowse link
G Gins1 GINS complex subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936620:421,845...446,853
Ensembl chrNW_004936620:422,230...446,753 		JBrowse link
G Gins2 GINS complex subunit 2 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:2,757,150...2,775,904
Ensembl chrNW_004936641:2,757,150...2,776,681 		JBrowse link
G Gins3 GINS complex subunit 3 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:10,209,127...10,216,701
Ensembl chrNW_004936475:10,209,071...10,218,051 		JBrowse link
G Gins4 GINS complex subunit 4 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936785:1,043,342...1,059,635
Ensembl chrNW_004936785:1,043,143...1,059,636 		JBrowse link
G Mcm2 minichromosome maintenance complex component 2 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:756,350...768,600
Ensembl chrNW_004936798:756,588...765,338 		JBrowse link
G Mcm3 minichromosome maintenance complex component 3 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:8,530,614...8,547,971
Ensembl chrNW_004936476:8,530,688...8,547,978 		JBrowse link
G Mcm4 minichromosome maintenance complex component 4 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:4,705,028...4,722,320
Ensembl chrNW_004936590:4,704,972...4,722,427 		JBrowse link
G Mcm5 minichromosome maintenance complex component 5 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:5,016,948...5,038,494
Ensembl chrNW_004936492:5,016,323...5,038,526 		JBrowse link
G Mcm6 minichromosome maintenance complex component 6 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:40,014,892...40,059,571
Ensembl chrNW_004936469:40,014,863...40,059,580 		JBrowse link
G Mcm7 minichromosome maintenance complex component 7 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:238,573...246,746
Ensembl chrNW_004936543:233,960...246,746 		JBrowse link
condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Add3 adducin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:928,956...1,042,168
Ensembl chrNW_004936486:928,522...1,043,084 		JBrowse link
G Brca1 BRCA1 DNA repair associated located_in ISO (PMID:20551173), (PMID:26490168) MGI PMID:20551173 PMID:26490168 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brd4 bromodomain containing 4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:5,176,682...5,246,102
Ensembl chrNW_004936596:5,177,147...5,246,518 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in ISO (PMID:24891606) MGI PMID:24891606 NCBI chrNW_004936877:523,022...528,387 JBrowse link
G Cdx2 caudal type homeobox 2 located_in ISO (PMID:15509711) MGI PMID:15509711 NCBI chrNW_004936472:23,137,936...23,141,205 JBrowse link
G Chek1 checkpoint kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936743:2,004,535...2,027,287
Ensembl chrNW_004936743:2,005,851...2,026,587 		JBrowse link
G Chmp1a charged multivesicular body protein 1A located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:366,563...376,303
Ensembl chrNW_004936641:366,569...376,337 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:2,754,694...2,788,249
Ensembl chrNW_004936492:2,753,289...2,788,102 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:143,078...160,318
Ensembl chrNW_004936500:143,078...160,212 		JBrowse link
G H1-6 H1.6 linker histone, cluster member located_in ISO (PMID:18316482) MGI PMID:18316482 NCBI chrNW_004936671:1,954,740...1,956,298
Ensembl chrNW_004936671:1,955,327...1,955,962 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:933,123...956,201
Ensembl chrNW_004936580:933,365...954,486 		JBrowse link
G Iho1 interactor of HORMAD1 1 located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936529:905,692...929,896
Ensembl chrNW_004936529:889,423...929,929 		JBrowse link
G Kifap3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:16,664,025...16,777,440
Ensembl chrNW_004936481:16,663,974...16,779,428 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chrNW_004936538:206,179...228,487
Ensembl chrNW_004936538:206,839...226,441 		JBrowse link
G LOC101966907 histone H2AX located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,046,930...4,049,017
Ensembl chrNW_004936542:4,047,915...4,048,346 		JBrowse link
G LOC101969275 tubulin gamma-1 chain located_in ISO (PMID:15007207) UniProt PMID:15007207 NCBI chrNW_004936490:17,357,782...17,363,006
Ensembl chrNW_004936490:17,357,608...17,398,008 		JBrowse link
G LOC101975928 protein argonaute-3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:18,479,811...18,552,457
Ensembl chrNW_004936474:18,443,453...18,552,143 		JBrowse link
G Lrpprc leucine rich pentatricopeptide repeat containing located_in ISO (PMID:12762840) HGNC-UCL PMID:12762840 NCBI chrNW_004936508:7,961,079...8,068,228 JBrowse link
G Mlh1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736 		JBrowse link
G Mlh3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:4,164,322...4,195,408
Ensembl chrNW_004936488:4,164,918...4,195,517 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease ISO sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chrNW_004936674:466,495...528,072
Ensembl chrNW_004936674:466,456...530,317 		JBrowse link
G Msh4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936571:2,827,283...2,898,562
Ensembl chrNW_004936571:2,822,058...2,898,562 		JBrowse link
G Ncapd2 non-SMC condensin I complex subunit D2 located_in ISO (PMID:25474630) ComplexPortal PMID:25474630 NCBI chrNW_004936709:1,250,442...1,275,823
Ensembl chrNW_004936709:1,250,495...1,275,769 		JBrowse link
G Ncapd3 non-SMC condensin II complex subunit D3 located_in ISO (PMID:25474630) ComplexPortal PMID:25474630 NCBI chrNW_004936684:1,618,271...1,687,905
Ensembl chrNW_004936684:1,616,974...1,692,235 		JBrowse link
G Ncapg non-SMC condensin I complex subunit G located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:10,408,347...10,445,361
Ensembl chrNW_004936477:10,405,997...10,445,206 		JBrowse link
G Ncapg2 non-SMC condensin II complex subunit G2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936856:567,765...625,745
Ensembl chrNW_004936856:567,306...625,800 		JBrowse link
G Ncaph non-SMC condensin I complex subunit H located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936744:440,958...468,964
Ensembl chrNW_004936744:440,956...468,972 		JBrowse link
G Ncaph2 non-SMC condensin II complex subunit H2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:320,885...327,290
Ensembl chrNW_004936629:321,011...327,607 		JBrowse link
G Nek2 NIMA related kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:1,683,027...1,695,410
Ensembl chrNW_004936557:1,682,984...1,695,414 		JBrowse link
G Nifk nucleolar protein interacting with the FHA domain of MKI67 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:48,984,370...49,003,058
Ensembl chrNW_004936469:48,994,003...49,005,522 		JBrowse link
G Nol6 nucleolar protein 6 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:1,981,832...1,997,153
Ensembl chrNW_004936524:1,982,898...1,997,054 		JBrowse link
G Psmc3ip PSMC3 interacting protein located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:17,328,195...17,333,700
Ensembl chrNW_004936490:17,328,494...17,333,657 		JBrowse link
G Rad21 RAD21 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:29,377,793...29,403,422
Ensembl chrNW_004936470:29,377,734...29,407,312 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:17,413,006...17,435,951
Ensembl chrNW_004936485:17,413,006...17,435,951 		JBrowse link
G Rad50 RAD50 double strand break repair protein located_in IEA
ISO		 sex vesicles/chromatin of XY bivalent TreeGrafter
RGD		 PMID:10855503 GO_REF:0000118 RGD:2300257 NCBI chrNW_004936647:2,546,100...2,637,524
Ensembl chrNW_004936647:2,543,599...2,637,846 		JBrowse link
G Rad51 RAD51 recombinase located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:4,119,020...4,136,811
Ensembl chrNW_004936471:4,114,530...4,136,248 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,635,175...12,646,907
Ensembl chrNW_004936474:12,635,175...12,647,231 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:369,366...375,243
Ensembl chrNW_004936722:369,423...375,243 		JBrowse link
G Rpa1 replication protein A1 located_in ISO (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254) MGI PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 NCBI chrNW_004936538:7,941,074...7,997,062
Ensembl chrNW_004936538:7,946,403...7,994,864 		JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:7,563,989...7,565,663
Ensembl chrNW_004936496:7,564,459...7,565,556 		JBrowse link
G Rsph1 radial spoke head component 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:1,402,289...1,423,398
Ensembl chrNW_004936500:1,402,219...1,423,509 		JBrowse link
G Shoc1 shortage in chiasmata 1 located_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936559:1,616,910...1,671,678
Ensembl chrNW_004936559:1,612,615...1,671,648 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:4,315,401...4,389,318
Ensembl chrNW_004936629:4,315,401...4,389,069 		JBrowse link
G Smc2 structural maintenance of chromosomes 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936793:909,663...958,883
Ensembl chrNW_004936793:910,654...958,811 		JBrowse link
G Smc4 structural maintenance of chromosomes 4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936708:362,605...395,217
Ensembl chrNW_004936708:362,603...395,246 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:430,804...458,112
Ensembl chrNW_004936543:432,552...458,112 		JBrowse link
G Sun2 Sad1 and UNC84 domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:2,609,444...2,629,050
Ensembl chrNW_004936492:2,609,406...2,626,564 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (PMID:22854038), (PMID:22863743), (PMID:24589552), (PMID:24891606) MGI PMID:22854038 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chrNW_004936627:239,232...365,062 JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:18316482), (PMID:21621532), (PMID:22863743), (PMID:24589552), (PMID:24891606) MGI PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chrNW_004936492:12,316,868...12,326,778
Ensembl chrNW_004936492:12,316,869...12,330,251 		JBrowse link
G Tex11 testis expressed 11 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:681,962...969,749
Ensembl chrNW_004936762:681,130...969,455 		JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:6,788,713...6,841,824
Ensembl chrNW_004936529:6,788,187...6,841,888 		JBrowse link
G Ttn titin located_in ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chrNW_004936509:7,733,426...7,999,503 JBrowse link
delta DNA polymerase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit part_of ISO
IEA		 RGD
UniProt
Ensembl
TreeGrafter		 PMID:10541966 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 RGD:729526 NCBI chrNW_004936889:231,373...250,985
Ensembl chrNW_004936889:231,373...250,987
Ensembl chrNW_004936889:231,373...250,987 		JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit part_of ISO
IEA		 RGD
UniProt
Ensembl
TreeGrafter		 PMID:10541966 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 RGD:729526 NCBI chrNW_004936478:19,074,871...19,083,624
Ensembl chrNW_004936478:19,072,810...19,083,669 		JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936498:3,544,001...3,584,456
Ensembl chrNW_004936498:3,543,914...3,585,934 		JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:2,383,919...2,385,705
Ensembl chrNW_004936599:2,383,792...2,386,537 		JBrowse link
DNA replication factor A complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcas2 BCAS2 pre-mRNA processing factor part_of
located_in		 IEA
ISO		 (PMID:24332808) Ensembl
UniProt		 PMID:24332808 GO_REF:0000107 NCBI chrNW_004936690:2,900,003...2,913,427
Ensembl chrNW_004936690:2,900,002...2,913,381 		JBrowse link
G Cdc5l cell division cycle 5 like located_in
part_of		 ISO
IEA		 (PMID:24332808) UniProt
Ensembl		 PMID:24332808 GO_REF:0000107 NCBI chrNW_004936476:15,647,470...15,698,095
Ensembl chrNW_004936476:15,648,678...15,698,106 		JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease located_in ISO (PMID:7700386) UniProt PMID:7700386 NCBI chrNW_004936472:8,209,482...8,234,696
Ensembl chrNW_004936472:8,209,540...8,234,334 		JBrowse link
G Helb DNA helicase B part_of
located_in		 IEA
ISO		 (PMID:26774285) Ensembl
UniProt		 PMID:26774285 GO_REF:0000107 NCBI chrNW_004936545:4,318,256...4,346,438
Ensembl chrNW_004936545:4,318,227...4,346,525 		JBrowse link
G Plrg1 pleiotropic regulator 1 located_in
part_of		 ISO
IEA		 (PMID:24332808) UniProt
Ensembl		 PMID:24332808 GO_REF:0000107 NCBI chrNW_004936576:1,284,758...1,297,758
Ensembl chrNW_004936576:1,282,664...1,297,818 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 part_of
located_in		 IEA
ISO		 (PMID:24332808) Ensembl
UniProt		 PMID:24332808 GO_REF:0000107 NCBI chrNW_004936581:2,031,894...2,042,294
Ensembl chrNW_004936581:2,031,822...2,042,424 		JBrowse link
G Rpa1 replication protein A1 part_of ISO
IEA		 RGD
Ensembl		 PMID:7503737 PMID:8463251 GO_REF:0000107 RGD:2307012 RGD:2307013 NCBI chrNW_004936538:7,941,074...7,997,062
Ensembl chrNW_004936538:7,946,403...7,994,864 		JBrowse link
G Rpa2 replication protein A2 part_of ISO
IEA		 RGD
Ensembl
TreeGrafter		 PMID:7503737 PMID:8463251 GO_REF:0000107 GO_REF:0000118 RGD:2307012 RGD:2307013 NCBI chrNW_004936474:12,127,026...12,147,120
Ensembl chrNW_004936474:12,126,245...12,147,130 		JBrowse link
G Rpa3 replication protein A3 part_of ISO
IEA		 RGD
Ensembl
TreeGrafter		 PMID:7503737 GO_REF:0000107 GO_REF:0000118 RGD:2307013 NCBI chrNW_004936585:2,267,113...2,270,635
Ensembl chrNW_004936585:2,266,706...2,272,259 		JBrowse link
G Smarcal1 SNF2 related chromatin remodeling annealing helicase 1 part_of
located_in		 IEA
ISO		 (PMID:19793862), (PMID:19793863) Ensembl
UniProt		 PMID:19793862 PMID:19793863 GO_REF:0000107 NCBI chrNW_004936586:828,661...887,988
Ensembl chrNW_004936586:828,650...888,047 		JBrowse link
G Tonsl tonsoku like, DNA repair protein located_in ISO (PMID:21055983) UniProt PMID:21055983 NCBI chrNW_004936470:7,817,444...7,829,124 JBrowse link
G Xpa XPA, DNA damage recognition and repair factor located_in
part_of		 ISO
IEA		 (PMID:7700386) UniProt
Ensembl		 PMID:7700386 GO_REF:0000107 NCBI chrNW_004936524:6,467,365...6,493,556
Ensembl chrNW_004936524:6,465,104...6,493,610 		JBrowse link
epsilon DNA polymerase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pole DNA polymerase epsilon, catalytic subunit part_of IEA TreeGrafter
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936660:2,575,255...2,622,867
Ensembl chrNW_004936660:2,575,360...2,622,852 		JBrowse link
G Pole2 DNA polymerase epsilon 2, accessory subunit part_of IEA TreeGrafter
InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936583:340,428...386,633
Ensembl chrNW_004936583:341,456...386,395 		JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936559:220,941...222,783 JBrowse link
G Pole4 DNA polymerase epsilon 4, accessory subunit part_of IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936556:1,161,359...1,167,283
Ensembl chrNW_004936556:1,160,385...1,170,843 		JBrowse link
GINS complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gins1 GINS complex subunit 1 part_of IEA InterPro
TreeGrafter
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936620:421,845...446,853
Ensembl chrNW_004936620:422,230...446,753 		JBrowse link
G Gins2 GINS complex subunit 2 part_of IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936641:2,757,150...2,775,904
Ensembl chrNW_004936641:2,757,150...2,776,681 		JBrowse link
G Gins3 GINS complex subunit 3 part_of IEA TreeGrafter
Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:10,209,127...10,216,701
Ensembl chrNW_004936475:10,209,071...10,218,051 		JBrowse link
G Gins4 GINS complex subunit 4 part_of IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936785:1,043,342...1,059,635
Ensembl chrNW_004936785:1,043,143...1,059,636 		JBrowse link
G Slc5a8 solute carrier family 5 member 8 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:12,747,654...12,792,865
Ensembl chrNW_004936492:12,746,996...12,795,421 		JBrowse link
Ino80 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin like 6A part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:3,577,412...3,587,182
Ensembl chrNW_004936566:3,573,974...3,595,534 		JBrowse link
G Actr5 actin related protein 5 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:2,676,515...2,701,447
Ensembl chrNW_004936561:2,676,498...2,701,507 		JBrowse link
G Actr8 actin related protein 8 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:4,523,865...4,542,476
Ensembl chrNW_004936473:4,525,837...4,542,497 		JBrowse link
G Ino80 INO80 complex ATPase subunit part_of IEA Ensembl
TreeGrafter
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:4,374,802...4,478,894
Ensembl chrNW_004936471:4,375,395...4,478,899 		JBrowse link
G Ino80b INO80 complex subunit B part_of IEA Ensembl
InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936556:678,073...681,157
Ensembl chrNW_004936556:677,944...681,147 		JBrowse link
G Ino80c INO80 complex subunit C part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936517:9,632,870...9,649,525
Ensembl chrNW_004936517:9,632,870...9,649,527 		JBrowse link
G Ino80d INO80 complex subunit D part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936631:2,405,056...2,474,798
Ensembl chrNW_004936631:2,410,300...2,474,811 		JBrowse link
G Ino80e INO80 complex subunit E part_of IEA TreeGrafter
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936501:12,463,592...12,472,271
Ensembl chrNW_004936501:12,463,520...12,472,257 		JBrowse link
G Mcrs1 microspherule protein 1 part_of IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936512:7,277,739...7,287,389
Ensembl chrNW_004936512:7,276,584...7,287,427 		JBrowse link
G Nfrkb nuclear factor related to kappaB binding protein located_in
part_of		 ISO
IEA		 (PMID:18922472) UniProt
InterPro
Ensembl		 PMID:18922472 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936572:2,435,875...2,468,848
Ensembl chrNW_004936572:2,435,847...2,471,655 		JBrowse link
G Ruvbl1 RuvB like AAA ATPase 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:559,706...572,710
Ensembl chrNW_004936798:559,778...572,506 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,995,212...3,010,563
Ensembl chrNW_004936664:2,995,213...3,010,853 		JBrowse link
G Tfpt TCF3 fusion partner part_of IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936994:234,978...239,425
Ensembl chrNW_004936994:234,992...239,425 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 located_in
part_of		 ISO
IEA		 (PMID:18922472) UniProt
Ensembl
InterPro		 PMID:18922472 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936638:1,242,950...1,289,376
Ensembl chrNW_004936638:1,242,893...1,290,512 		JBrowse link
G Yy1 YY1 transcription factor part_of ISO (PMID:18026119), (PMID:21303910) UniProt PMID:18026119 PMID:21303910 NCBI chrNW_004936604:3,911,407...3,945,405 JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905 		JBrowse link
G Brca1 BRCA1 DNA repair associated located_in ISO (PMID:9774970) MGI PMID:9774970 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brca2 BRCA2 DNA repair associated located_in ISO (PMID:9774970) MGI PMID:9774970 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:2,754,694...2,788,249
Ensembl chrNW_004936492:2,753,289...2,788,102 		JBrowse link
G Incenp inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:999,148...1,028,157
Ensembl chrNW_004936581:999,497...1,025,062 		JBrowse link
G Kash5 KASH domain containing 5 located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936664:3,268,824...3,300,689
Ensembl chrNW_004936664:3,275,669...3,297,605 		JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936510:12,063,763...12,208,789
Ensembl chrNW_004936510:12,063,763...12,208,799 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:17,413,006...17,435,951
Ensembl chrNW_004936485:17,413,006...17,435,951 		JBrowse link
G Rad51 RAD51 recombinase located_in ISO (PMID:9774970)
(PMID:18694567), (PMID:21743440)		 MGI PMID:9774970 PMID:18694567 PMID:21743440 NCBI chrNW_004936471:4,119,020...4,136,811
Ensembl chrNW_004936471:4,114,530...4,136,248 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:369,366...375,243
Ensembl chrNW_004936722:369,423...375,243 		JBrowse link
G Rpa1 replication protein A1 located_in ISO (PMID:21743440), (PMID:22711701) MGI PMID:21743440 PMID:22711701 NCBI chrNW_004936538:7,941,074...7,997,062
Ensembl chrNW_004936538:7,946,403...7,994,864 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A ISO MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chrNW_004936751:332,351...388,756
Ensembl chrNW_004936751:349,597...388,755 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:4,315,401...4,389,318
Ensembl chrNW_004936629:4,315,401...4,389,069 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:1,409,757...1,436,206
Ensembl chrNW_004936486:1,408,045...1,435,875 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:430,804...458,112
Ensembl chrNW_004936543:432,552...458,112 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in ISO PMID:9933407
(PMID:18283110), (PMID:22011390), (PMID:22711701), (PMID:23133398)		 UniProt
MGI		 PMID:9933407 PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 RGD:11035335 NCBI chrNW_004936514:8,264,628...8,331,577 JBrowse link
G Sycp2l synaptonemal complex protein 2 like located_in ISO (PMID:26362258) MGI PMID:26362258 NCBI chrNW_004936534:2,024,341...2,131,241 JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO PMID:9933407
(PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 UniProt
MGI		 PMID:9933407 PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 More... RGD:11035335 NCBI chrNW_004936492:12,316,868...12,326,778
Ensembl chrNW_004936492:12,316,869...12,330,251 		JBrowse link
nuclear origin of replication recognition complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrwd1 leucine rich repeats and WD repeat domain containing 1 part_of IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936543:1,889,072...1,895,643
Ensembl chrNW_004936543:1,888,768...1,896,966 		JBrowse link
G Mcm2 minichromosome maintenance complex component 2 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:756,350...768,600
Ensembl chrNW_004936798:756,588...765,338 		JBrowse link
G Orc1 origin recognition complex subunit 1 part_of IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936522:8,580,661...8,610,750
Ensembl chrNW_004936522:8,586,591...8,610,747 		JBrowse link
G Orc2 origin recognition complex subunit 2 part_of IEA TreeGrafter
Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936726:215,483...259,867
Ensembl chrNW_004936726:211,859...255,754 		JBrowse link
G Orc3 origin recognition complex subunit 3 part_of IEA TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936510:4,222,036...4,281,800
Ensembl chrNW_004936510:4,225,697...4,282,190 		JBrowse link
G Orc4 origin recognition complex subunit 4 part_of IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936469:29,131,892...29,193,258
Ensembl chrNW_004936469:29,131,789...29,194,863 		JBrowse link
G Orc5 origin recognition complex subunit 5 part_of IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936479:19,450,087...19,516,976
Ensembl chrNW_004936479:19,450,070...19,517,160 		JBrowse link
G Orc6 origin recognition complex subunit 6 part_of IEA TreeGrafter
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:78,234...85,387
Ensembl chrNW_004936475:78,217...85,517 		JBrowse link
nuclear replication fork term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1b bromodomain adjacent to zinc finger domain 1B located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:2,713,575...2,779,947
Ensembl chrNW_004936543:2,713,589...2,779,993 		JBrowse link
G Carm1 coactivator associated arginine methyltransferase 1 located_in
is_active_in		 IEA
ISO		 (PMID:33412112) Ensembl
UniProt		 PMID:33412112 GO_REF:0000107 NCBI chrNW_004936659:1,071,883...1,120,917
Ensembl chrNW_004936659:1,090,164...1,123,920 		JBrowse link
G Etaa1 ETAA1 activator of ATR kinase located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936491:11,962,161...11,975,164
Ensembl chrNW_004936491:11,962,087...11,979,349 		JBrowse link
G Mcm10 minichromosome maintenance 10 replication initiation factor located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004937104:132,692...160,965 JBrowse link
G Mms22l MMS22 like, DNA repair protein is_active_in
located_in		 ISO
IEA		 (PMID:27797818) UniProt
TreeGrafter
Ensembl		 PMID:27797818 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936699:486,510...608,532
Ensembl chrNW_004936699:486,491...608,562 		JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 located_in
is_active_in		 IEA
ISO		 (PMID:33412112) Ensembl
UniProt		 PMID:33412112 GO_REF:0000107 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
G Pcna proliferating cell nuclear antigen located_in ISO (PMID:15543136), (PMID:21383955) BHF-UCL PMID:15543136 PMID:21383955 NCBI chrNW_004936485:13,766,221...13,771,215 JBrowse link
G Smarca5 SNF2 related chromatin remodeling ATPase 5 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:4,857,816...4,890,266
Ensembl chrNW_004936535:4,856,672...4,890,225 		JBrowse link
G Smarcad1 SNF2 related chromatin remodeling ATPase with DExD box 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936687:1,728,848...1,803,992
Ensembl chrNW_004936687:1,729,417...1,803,992 		JBrowse link
G Smarcal1 SNF2 related chromatin remodeling annealing helicase 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936586:828,661...887,988
Ensembl chrNW_004936586:828,650...888,047 		JBrowse link
G Tonsl tonsoku like, DNA repair protein is_active_in
located_in		 ISO (PMID:26527279), (PMID:29478807)
(PMID:21055983), (PMID:21055984)		 UniProt PMID:21055983 PMID:21055984 PMID:26527279 PMID:29478807 NCBI chrNW_004936470:7,817,444...7,829,124 JBrowse link
G Trex1 three prime repair exonuclease 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:264,535...266,451
Ensembl chrNW_004936529:264,468...266,422 		JBrowse link
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936697:129,821...184,238
Ensembl chrNW_004936697:130,105...183,576 		JBrowse link
G Zmiz2 zinc finger MIZ-type containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:19,616,850...19,637,958
Ensembl chrNW_004936478:19,616,849...19,638,125 		JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936469:40,328,850...40,558,797
Ensembl chrNW_004936469:40,328,787...40,609,533 		JBrowse link
nucleolus organizer region term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt7 sirtuin 7 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:5,418,331...5,425,050
Ensembl chrNW_004936594:5,418,796...5,424,988 		JBrowse link
perichromatin fibrils term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clock clock circadian regulator ISO RGD PMID:16208722 RGD:10401943 NCBI chrNW_004936482:17,789,834...17,900,371
Ensembl chrNW_004936482:17,794,134...17,845,303 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:7,045,043...7,077,710
Ensembl chrNW_004936545:7,045,043...7,077,736 		JBrowse link
G Dhx9 DExH-box helicase 9 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:6,896,487...6,934,938
Ensembl chrNW_004936481:6,896,359...6,935,623 		JBrowse link
G Nufip1 nuclear FMR1 interacting protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936791:1,095,583...1,138,965
Ensembl chrNW_004936791:1,094,224...1,138,984 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 located_in ISO (PMID:10318760) MGI PMID:10318760 NCBI chrNW_004936659:1,152,846...1,246,718
Ensembl chrNW_004936659:1,169,792...1,249,213 		JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 ISO MMO:0000663 RGD PMID:19321046 RGD:150429709 NCBI chrNW_004936594:1,775,412...1,778,389
Ensembl chrNW_004936594:1,777,376...1,778,164 		JBrowse link
G Tardbp TAR DNA binding protein ISO RGD PMID:19539030 RGD:5687141 NCBI chrNW_004936474:90,813...103,713 JBrowse link
G Trim24 tripartite motif containing 24 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936592:2,902,805...2,962,602
Ensembl chrNW_004936592:2,863,743...2,963,977 		JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msh4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936571:2,827,283...2,898,562
Ensembl chrNW_004936571:2,822,058...2,898,562 		JBrowse link
replication fork protection complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Timeless timeless circadian regulator part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936646:780,021...792,856
Ensembl chrNW_004936646:780,087...792,837 		JBrowse link
G Tipin TIMELESS interacting protein part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:26,516,511...26,531,403
Ensembl chrNW_004936471:26,517,042...26,531,410 		JBrowse link
Rpd3L-Expanded complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kmt2e lysine methyltransferase 2E (inactive) part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936479:18,674,657...18,764,177
Ensembl chrNW_004936479:18,675,413...18,738,983 		JBrowse link
G Setd5 SET domain containing 5 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936602:3,577,543...3,654,179
Ensembl chrNW_004936602:3,577,525...3,654,269 		JBrowse link
Set3 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kmt2e lysine methyltransferase 2E (inactive) part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936479:18,674,657...18,764,177
Ensembl chrNW_004936479:18,675,413...18,738,983 		JBrowse link
G Setd5 SET domain containing 5 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936602:3,577,543...3,654,179
Ensembl chrNW_004936602:3,577,525...3,654,269 		JBrowse link
Sin3-type complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csnk2a1 casein kinase 2 alpha 1 part_of ISO (PMID:17827154) BHF-UCL PMID:17827154 NCBI chrNW_004936485:17,966,993...18,021,191 JBrowse link
G Hdac1 histone deacetylase 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:15,320,635...15,351,418
Ensembl chrNW_004936474:15,320,729...15,350,860 		JBrowse link
G Hdac2 histone deacetylase 2 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936679:2,448,676...2,474,641
Ensembl chrNW_004936679:2,448,390...2,474,641 		JBrowse link
G Ing2 inhibitor of growth family member 2 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936554:5,585,953...5,593,536
Ensembl chrNW_004936554:5,587,548...5,593,635 		JBrowse link
G LOC101968683 SIN3-HDAC complex-associated factor part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936473:2,116,846...2,117,787 JBrowse link
G LOC101970374 SIN3-HDAC complex-associated factor-like part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936582:279,558...280,246 JBrowse link
G LOC101972833 SIN3-HDAC complex-associated factor-like part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936482:14,099,060...14,099,887 JBrowse link
G Morf4l1 mortality factor 4 like 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:37,073,920...37,097,216
Ensembl chrNW_004936471:37,073,895...37,097,235 		JBrowse link
G Phf12 PHD finger protein 12 part_of IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:5,097,656...5,141,997
Ensembl chrNW_004936538:5,097,648...5,142,234 		JBrowse link
G Sap130 Sin3A associated protein 130 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936469:43,315,175...43,386,644
Ensembl chrNW_004936469:43,317,008...43,388,184 		JBrowse link
G Sin3a SIN3 transcription regulator family member A part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:34,206,084...34,260,538
Ensembl chrNW_004936471:34,204,524...34,260,564 		JBrowse link
G Sin3b SIN3 transcription regulator family member B part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936596:3,836,109...3,875,416
Ensembl chrNW_004936596:3,837,826...3,875,402 		JBrowse link
G Sinhcaf SIN3-HDAC complex associated factor part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936607:4,854,332...4,889,999 JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component part_of ISO (PMID:11909966) UniProt PMID:11909966 NCBI chrNW_004936668:2,078,783...2,113,154
Ensembl chrNW_004936668:2,077,729...2,113,361 		JBrowse link
Slx1-Slx4 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slx1a SLX1 homolog A, structure-specific endonuclease subunit part_of IEA TreeGrafter
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936501:12,332,135...12,335,081 JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936694:720,585...744,477
Ensembl chrNW_004936694:722,481...744,600 		JBrowse link
Swi5-Sfr1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfr1 SWI5 dependent homologous recombination repair protein 1 part_of IEA TreeGrafter
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936600:2,034,023...2,049,131
Ensembl chrNW_004936600:2,041,170...2,049,357 		JBrowse link
G Swi5 SWI5 homologous recombination repair protein part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936487:15,814,463...15,822,783
Ensembl chrNW_004936487:15,814,102...15,823,311 		JBrowse link
Swi5-Swi2 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Swi5 SWI5 homologous recombination repair protein part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936487:15,814,463...15,822,783
Ensembl chrNW_004936487:15,814,102...15,823,311 		JBrowse link
Swr1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32e acidic nuclear phosphoprotein 32 family member E part_of ISO (PMID:24463511) UniProt PMID:24463511 NCBI chrNW_004936580:519,135...526,079 JBrowse link
G Brd8 bromodomain containing 8 part_of ISO (PMID:24463511) UniProt PMID:24463511 NCBI chrNW_004936531:7,333,974...7,361,855
Ensembl chrNW_004936531:7,333,907...7,362,114 		JBrowse link
G Cfdp1 craniofacial development protein 1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936475:24,053,558...24,164,674
Ensembl chrNW_004936475:24,052,963...24,164,679 		JBrowse link
G Dmap1 DNA methyltransferase 1 associated protein 1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:25,486,447...25,495,909
Ensembl chrNW_004936474:25,486,462...25,495,992 		JBrowse link
G Ep400 E1A binding protein p400 part_of IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936660:2,212,063...2,297,730
Ensembl chrNW_004936660:2,212,243...2,295,862 		JBrowse link
G Ing3 inhibitor of growth family member 3 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936605:4,154,276...4,179,627
Ensembl chrNW_004936605:4,151,202...4,179,689 		JBrowse link
G Kat5 lysine acetyltransferase 5 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128 		JBrowse link
G Ruvbl1 RuvB like AAA ATPase 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:559,706...572,710
Ensembl chrNW_004936798:559,778...572,506 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,995,212...3,010,563
Ensembl chrNW_004936664:2,995,213...3,010,853 		JBrowse link
G Srcap Snf2 related CREBBP activator protein part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936501:13,095,690...13,131,183
Ensembl chrNW_004936501:13,096,840...13,131,183 		JBrowse link
G Trrap transformation/transcription domain associated protein part_of ISO (PMID:24463511) UniProt PMID:24463511 NCBI chrNW_004936750:1,245,926...1,360,226
Ensembl chrNW_004936750:1,248,320...1,359,473 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in ISO (PMID:24390283) UniProt PMID:24390283 NCBI chrNW_004936877:523,022...528,387 JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 (inactive) located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:2,638,189...2,646,589
Ensembl chrNW_004936543:2,638,016...2,646,589 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:933,123...956,201
Ensembl chrNW_004936580:933,365...954,486 		JBrowse link
G Hormad2 HORMA domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936904:477,398...546,574
Ensembl chrNW_004936904:477,398...546,574 		JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 located_in ISO (PMID:8622925) MGI PMID:8622925 NCBI chrNW_004936495:8,243,369...8,246,082 JBrowse link
G Incenp inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:999,148...1,028,157
Ensembl chrNW_004936581:999,497...1,025,062 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chrNW_004936538:206,179...228,487
Ensembl chrNW_004936538:206,839...226,441 		JBrowse link
G LOC101955845 synaptonemal complex protein 3-like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936809:42,732...53,271 JBrowse link
G LOC101977976 E3 ubiquitin-protein ligase CCNB1IP1 located_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936751:1,851,811...1,853,370 JBrowse link
G Mlh1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736 		JBrowse link
G Mlh3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:4,164,322...4,195,408
Ensembl chrNW_004936488:4,164,918...4,195,517 		JBrowse link
G Msh4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936571:2,827,283...2,898,562
Ensembl chrNW_004936571:2,822,058...2,898,562 		JBrowse link
G Msh5 mutS homolog 5 located_in ISO (PMID:16260499) MGI PMID:16260499 NCBI chrNW_004936727:1,776,038...1,794,152
Ensembl chrNW_004936727:1,777,570...1,793,711 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 (inactive) ISO RGD PMID:1363622 RGD:633987 NCBI chrNW_004936490:16,705,716...16,712,324
Ensembl chrNW_004936490:16,705,690...16,712,324 		JBrowse link
G Plk1 polo like kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:8,321,415...8,332,414
Ensembl chrNW_004936501:8,321,305...8,332,424 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:369,366...375,243
Ensembl chrNW_004936722:369,423...375,243 		JBrowse link
G Rnf212 ring finger protein 212 located_in ISO (PMID:23396135), (PMID:24390283) UniProt PMID:23396135 PMID:24390283 NCBI chrNW_004936477:22,122,854...22,173,324 JBrowse link
G Rnf212b ring finger protein 212B located_in IEA TreeGrafter
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936722:1,086,237...1,116,352
Ensembl chrNW_004936722:1,088,424...1,116,352 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chrNW_004936751:332,351...388,756
Ensembl chrNW_004936751:349,597...388,755 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:4,315,401...4,389,318
Ensembl chrNW_004936629:4,315,401...4,389,069 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chrNW_004936486:1,409,757...1,436,206
Ensembl chrNW_004936486:1,408,045...1,435,875 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:430,804...458,112
Ensembl chrNW_004936543:432,552...458,112 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936486:19,723,354...19,731,175
Ensembl chrNW_004936486:19,723,627...19,727,770 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (PMID:12815066), (PMID:16968740), (PMID:17696610), (PMID:18070917), (PMID:18316482), (PMID:20551173), (PMID:22011390), (PMID:25675407), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482)
(PMID:15937223)		 RGD
MGI
UniProt		 PMID:8660935 PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 More... RGD:8554354 RGD:9686370 NCBI chrNW_004936627:239,232...365,062 JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in ISO (PMID:18316482), (PMID:26362258) RGD
MGI		 PMID:9592139 PMID:18316482 PMID:26362258 RGD:69387 NCBI chrNW_004936514:8,264,628...8,331,577 JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:12,316,868...12,326,778
Ensembl chrNW_004936492:12,316,869...12,330,251 		JBrowse link
G Syn1 synapsin I located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:13,334,998...13,387,082
Ensembl chrNW_004936502:13,334,995...13,387,172 		JBrowse link
G Tex11 testis expressed 11 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:681,962...969,749
Ensembl chrNW_004936762:681,130...969,455 		JBrowse link
G Tex12 testis expressed 12 located_in ISO (PMID:16968740) MGI PMID:16968740 NCBI chrNW_004936612:2,297,754...2,303,130 JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stag3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:430,804...458,112
Ensembl chrNW_004936543:432,552...458,112 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (PMID:15870106), (PMID:18283110), (PMID:21539824), (PMID:22711701) RGD
MGI		 PMID:1464329 PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701 RGD:729937 NCBI chrNW_004936627:239,232...365,062 JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:15870106) MGI PMID:15870106 NCBI chrNW_004936492:12,316,868...12,326,778
Ensembl chrNW_004936492:12,316,869...12,330,251 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18223
    cellular anatomical structure 18002
      membrane-enclosed lumen 4588
        organelle lumen 4588
          intracellular organelle lumen 4587
            nuclear lumen 4141
              nuclear chromosome 216
                Barr body 6
                CMG complex 11
                COMA complex 0
                GINS complex 5
                Ino80 complex 15
                RITS complex 0
                Rpd3L-Expanded complex 2
                Set3 complex 2
                Sin3-type complex + 14
                Slx1-Slx4 complex 2
                Smp focus 0
                Swi5-Sfr1 complex 2
                Swi5-Swi2 complex 1
                Swr1 complex 11
                condensed nuclear chromosome + 81
                epsilon DNA polymerase complex 4
                nuclear origin of replication recognition complex 8
                nuclear replication fork + 35
                nucleolar chromatin + 1
                perichromatin fibrils 8
Path 2
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  cellular_component 18223
    cellular anatomical structure 18002
      intracellular anatomical structure 14383
        intracellular organelle 12959
          intracellular membrane-bounded organelle 11786
            nucleus 7731
              nuclear lumen 4141
                nuclear chromosome 216
                  Barr body 6
                  CMG complex 11
                  COMA complex 0
                  GINS complex 5
                  Ino80 complex 15
                  RITS complex 0
                  Rpd3L-Expanded complex 2
                  Set3 complex 2
                  Sin3-type complex + 14
                  Slx1-Slx4 complex 2
                  Smp focus 0
                  Swi5-Sfr1 complex 2
                  Swi5-Swi2 complex 1
                  Swr1 complex 11
                  condensed nuclear chromosome + 81
                  epsilon DNA polymerase complex 4
                  nuclear origin of replication recognition complex 8
                  nuclear replication fork + 35
                  nucleolar chromatin + 1
                  perichromatin fibrils 8
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