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ONTOLOGY REPORT - ANNOTATIONS

Term:nuclear chromosome
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Accession:GO:0000228 term browser browse the term
Definition:A chromosome that encodes the nuclear genome and is found in the nucleus of a eukaryotic cell during the cell cycle phases when the nucleus is intact.
Synonyms:narrow_synonym: nuclear interphase chromosome


show annotations for term's descendants           Sort by:
nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATRX ATRX chromatin remodeler located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:66,682,968...66,969,421
Ensembl chr  X:76,795,574...77,083,486 		JBrowse link
G BAZ1A bromodomain adjacent to zinc finger domain 1A located_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:15,510,881...15,632,516
Ensembl chr14:33,699,424...33,804,473 		JBrowse link
G BIRC5 baculoviral IAP repeat containing 5 located_in ISO (PMID:16322459) UniProt PMID:16322459 NCBI chr17:72,292,332...72,303,493
Ensembl chr17:77,842,724...77,854,159 		JBrowse link
G BLM BLM RecQ like helicase located_in IEA Ensembl GO_REF:0000107 NCBI chr15:69,407,248...69,508,070
Ensembl chr15:88,607,157...88,707,864 		JBrowse link
G CHD1 chromodomain helicase DNA binding protein 1 is_active_in
located_in		 ISO
IEA		 (PMID:9326634) GO_Central
Ensembl		 PMID:9326634 GO_REF:0000107 NCBI chr 5:94,165,414...94,238,836
Ensembl chr 5:99,721,032...99,790,263 		JBrowse link
G E2F1 E2F transcription factor 1 located_in ISO PMID:24250814 UniProt PMID:24250814 RGD:151356618 NCBI chr20:29,963,083...29,973,860
Ensembl chr20:31,103,764...31,110,604 		JBrowse link
G EXOSC9 exosome component 9 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:114,001,770...114,017,395
Ensembl chr 4:125,138,668...125,154,288 		JBrowse link
G FIGNL1 fidgetin like 1 located_in ISO (PMID:23754376) UniProt PMID:23754376 NCBI chr 7:51,080,052...51,093,694 JBrowse link
G GINS2 GINS complex subunit 2 located_in IEA UniProt GO_REF:0000117 NCBI chr16:66,344,706...66,356,079
Ensembl chr16:85,681,716...85,691,626 		JBrowse link
G HCFC1 host cell factor C1 located_in ISO PMID:24250814 UniProt PMID:24250814 RGD:151356618 NCBI chr  X:143,502,159...143,526,418
Ensembl chr  X:153,389,859...153,412,999 		JBrowse link
G HMGA2 high mobility group AT-hook 2 located_in ISO (PMID:11555636) MGI PMID:11555636 NCBI chr12:22,954,946...23,096,623 JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:220,450,218...220,461,412
Ensembl chr 1:225,817,899...225,842,031 		JBrowse link
G IK IK cytokine located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:136,012,381...136,027,099
Ensembl chr 5:142,129,130...142,143,393 		JBrowse link
G LOC100974858 core histone macro-H2A.1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834 		JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:6,623,568...6,662,741
Ensembl chr12:6,540,750...6,580,206 		JBrowse link
G PINX1 PIN2 (TERF1) interacting telomerase inhibitor 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:8,366,819...8,443,359 JBrowse link
G RAD51 RAD51 recombinase located_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,638,310...19,672,474
Ensembl chr15:37,891,056...37,925,207 		JBrowse link
G SETX senataxin located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:103,381,356...103,474,902
Ensembl chr 9:132,016,767...132,109,665 		JBrowse link
G SMARCB1 SWI/SNF related BAF chromatin remodeling complex subunit B1 located_in IEA InterPro GO_REF:0000002 NCBI chr22:4,542,764...4,589,461
Ensembl chr22:22,627,982...22,673,921 		JBrowse link
G SMC2 structural maintenance of chromosomes 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:75,273,163...75,323,486
Ensembl chr 9:103,402,967...103,449,949 		JBrowse link
G SPIDR scaffold protein involved in DNA repair located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:43,691,454...44,166,259
Ensembl chr 8:41,083,964...41,558,170 		JBrowse link
G SPO11 SPO11 initiator of meiotic double strand breaks located_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:53,669,128...53,684,328
Ensembl chr20:54,948,661...54,963,384 		JBrowse link
G TOP1 DNA topoisomerase I located_in IEA Ensembl GO_REF:0000107 NCBI chr20:37,368,606...37,464,649
Ensembl chr20:38,468,452...38,562,652 		JBrowse link
G TOP2A DNA topoisomerase II alpha located_in IEA Ensembl GO_REF:0000107 NCBI chr17:16,872,169...16,901,605
Ensembl chr17:17,097,778...17,126,207 		JBrowse link
G ZBTB32 zinc finger and BTB domain containing 32 located_in ISO (PMID:11555636) MGI PMID:11555636 NCBI chr19:32,633,923...32,647,675
Ensembl chr19:41,369,043...41,381,634 		JBrowse link
alpha DNA polymerase:primase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLA1 DNA polymerase alpha 1, catalytic subunit part_of ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:7670930 GO_REF:0000107 GO_REF:0000118 RGD:1580605 NCBI chr  X:17,290,805...17,592,163
Ensembl chr  X:24,657,878...24,960,231 		JBrowse link
G POLA2 DNA polymerase alpha 2, accessory subunit part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:60,626,555...60,670,716
Ensembl chr11:63,966,531...64,001,335 		JBrowse link
G PRIM1 DNA primase subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr12:32,155,541...32,176,363
Ensembl chr12:32,408,929...32,428,734 		JBrowse link
G PRIM2 DNA primase subunit 2 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 6:56,875,331...56,884,118 JBrowse link
Barr body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100970414 histone H3.3A located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447 		JBrowse link
G LOC100974647 core histone macro-H2A.2 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:66,526,013...66,585,568
Ensembl chr10:69,077,456...69,114,194 		JBrowse link
G LOC100974858 core histone macro-H2A.1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834 		JBrowse link
G LOC100974973 histone H2A.Z NOT|located_in ISO (PMID:11331621) MGI PMID:11331621 NCBI chr 4:92,371,150...92,373,454
Ensembl chr 4:103,030,469...103,033,397 		JBrowse link
G LOC100988671 histone H3.3A located_in IEA Ensembl GO_REF:0000107 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106 		JBrowse link
G LRIF1 ligand dependent nuclear receptor interacting factor 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:113,523,567...113,611,043
Ensembl chr 1:126,736,039...126,752,907 		JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr18:11,479,742...11,627,035
Ensembl chr18:13,785,912...13,933,887 		JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C15H14orf39 chromosome 15 C14orf39 homolog located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:41,040,315...41,090,267
Ensembl chr14:59,304,040...59,351,956 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr11:57,488,790...57,519,552
Ensembl chr11:60,846,199...60,874,540 		JBrowse link
G SYCE1 synaptonemal complex central element protein 1 located_in ISO (PMID:15944401), (PMID:22164254) HGNC-UCL PMID:15944401 PMID:22164254 Ensembl chr10:134,866,705...134,878,566 JBrowse link
G SYCE2 synaptonemal complex central element protein 2 located_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr19:12,459,646...12,481,833
Ensembl chr19:13,203,595...13,224,052 		JBrowse link
G SYCE3 synaptonemal complex central element protein 3 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:30,797,389...30,809,517
Ensembl chr22:49,908,095...49,913,903 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:87,565,888...87,701,530
Ensembl chr 1:122,614,520...122,754,137 		JBrowse link
G TEX11 testis expressed 11 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:59,796,821...60,175,517
Ensembl chr  X:69,877,751...70,233,320 		JBrowse link
G TEX12 testis expressed 12 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:107,048,417...107,053,655
Ensembl chr11:110,817,016...110,896,829 		JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HUS1 HUS1 checkpoint clamp component part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:48,606,848...48,622,194
Ensembl chr 7:48,714,668...48,731,005 		JBrowse link
G HUS1B HUS1 checkpoint clamp component B part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 6:466,508...469,590
Ensembl chr 6:601,288...602,124 		JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:75,452,153...75,465,022
Ensembl chr 5:80,732,954...80,744,448 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A part_of IEA InterPro
TreeGrafter
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr11:62,675,480...62,756,886
Ensembl chr11:66,061,208...66,068,214 		JBrowse link
G RAD9B RAD9 checkpoint clamp component B part_of IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr12:108,072,061...108,103,338
Ensembl chr12:111,467,845...111,498,350 		JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801 		JBrowse link
G MLH3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:55,568,033...55,603,672
Ensembl chr14:74,413,319...74,445,749 		JBrowse link
CMG complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC45 cell division cycle 45 part_of IEA Ensembl GO_REF:0000107 NCBI chr22:2,239,040...2,279,807
Ensembl chr22:17,913,729...17,955,195 		JBrowse link
G GINS1 GINS complex subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr20:25,352,711...25,393,926
Ensembl chr20:25,757,555...25,797,829 		JBrowse link
G GINS2 GINS complex subunit 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr16:66,344,706...66,356,079
Ensembl chr16:85,681,716...85,691,626 		JBrowse link
G GINS3 GINS complex subunit 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr16:38,653,876...38,672,154
Ensembl chr16:57,790,392...57,801,904 		JBrowse link
G GINS4 GINS complex subunit 4 part_of IEA Ensembl GO_REF:0000107 NCBI chr 8:40,774,253...40,790,609
Ensembl chr 8:38,224,907...38,240,562 		JBrowse link
G MCM2 minichromosome maintenance complex component 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr 3:124,643,362...124,667,121
Ensembl chr 3:131,950,887...131,974,641 		JBrowse link
G MCM3 minichromosome maintenance complex component 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:51,816,615...51,837,404
Ensembl chr 6:53,085,231...53,105,344 		JBrowse link
G MCM4 minichromosome maintenance complex component 4 part_of IEA Ensembl GO_REF:0000107 NCBI chr 8:44,387,529...44,404,773
Ensembl chr 8:41,778,247...41,794,783 		JBrowse link
G MCM5 minichromosome maintenance complex component 5 part_of IEA Ensembl GO_REF:0000107 NCBI chr22:16,407,145...16,431,822
Ensembl chr22:34,249,831...34,274,423 		JBrowse link
G MCM6 minichromosome maintenance complex component 6 part_of IEA Ensembl GO_REF:0000107 NCBI chr2B:23,986,278...24,023,045
Ensembl chr2B:139,911,909...139,947,687 		JBrowse link
G MCM7 minichromosome maintenance complex component 7 part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:92,128,037...92,136,976
Ensembl chr 7:105,561,591...105,570,720 		JBrowse link
condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADD3 adducin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:106,597,693...106,727,494
Ensembl chr10:110,123,270...110,178,671 		JBrowse link
G AGO3 argonaute RISC catalytic component 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:35,196,371...35,322,220
Ensembl chr 1:36,372,221...36,497,190 		JBrowse link
G BRCA1 BRCA1 DNA repair associated located_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,197,946...14,279,064
Ensembl chr17:14,428,526...14,506,815 		JBrowse link
G BRD4 bromodomain containing 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr19:14,768,239...14,805,770
Ensembl chr19:15,754,930...15,789,600 		JBrowse link
G CCNB1IP1 cyclin B1 interacting protein 1 located_in ISO (PMID:24891606) MGI PMID:24891606 NCBI chr14:1,182,025...1,205,471
Ensembl chr14:19,235,987...19,258,663 		JBrowse link
G CDX2 caudal type homeobox 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:9,241,856...9,250,297
Ensembl chr13:27,586,340...27,593,632 		JBrowse link
G CHEK1 checkpoint kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:120,446,352...120,478,207
Ensembl chr11:124,359,218...124,390,981 		JBrowse link
G CHMP1A charged multivesicular body protein 1A located_in IEA Ensembl GO_REF:0000107 NCBI chr16:70,398,021...70,411,383
Ensembl chr16:90,003,892...90,017,653 		JBrowse link
G DMC1 DNA meiotic recombinase 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:19,433,989...19,485,804
Ensembl chr22:37,253,609...37,305,769 		JBrowse link
G DNMT3L DNA methyltransferase 3 like located_in IEA Ensembl GO_REF:0000107 NCBI chr21:30,503,194...30,520,237
Ensembl chr21:43,798,778...43,814,283 		JBrowse link
G H1-6 H1.6 linker histone, cluster member located_in ISO (PMID:18316482) MGI PMID:18316482 NCBI chr 6:25,941,055...25,943,565
Ensembl chr 6:26,600,454...26,601,083 		JBrowse link
G HORMAD1 HORMA domain containing 1 located_in ISO (PMID:22164254), (PMID:22530760) MGI PMID:22164254 PMID:22530760 NCBI chr 1:126,054,585...126,077,361
Ensembl chr 1:129,704,451...129,726,691 		JBrowse link
G IHO1 interactor of HORMAD1 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:49,122,120...49,181,228
Ensembl chr 3:50,239,250...50,259,890 		JBrowse link
G KIFAP3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:145,410,755...145,564,248
Ensembl chr 1:149,127,548...149,280,831 		JBrowse link
G LIG3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chr17:21,776,483...21,805,706
Ensembl chr17:22,074,046...22,095,220 		JBrowse link
G LOC100994157 histone H2AX located_in ISO (PMID:20551173), (PMID:22164254), (PMID:22711701), (PMID:23555294), (PMID:26490168) MGI PMID:20551173 PMID:22164254 PMID:22711701 PMID:23555294 PMID:26490168 NCBI chr11:113,932,078...113,933,679 JBrowse link
G LRPPRC leucine rich pentatricopeptide repeat containing located_in IEA Ensembl GO_REF:0000107 NCBI chr2A:43,975,949...44,083,846
Ensembl chr2A:44,914,578...45,021,434 		JBrowse link
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801 		JBrowse link
G MLH3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:55,568,033...55,603,672
Ensembl chr14:74,413,319...74,445,749 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease ISO sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chr11:89,418,537...89,500,705
Ensembl chr11:92,918,549...92,985,966 		JBrowse link
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:75,011,947...75,130,036
Ensembl chr 1:76,983,852...77,099,896 		JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 located_in ISO (PMID:25474630) ComplexPortal PMID:25474630 NCBI chr12:6,623,568...6,662,741
Ensembl chr12:6,540,750...6,580,206 		JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 located_in ISO (PMID:25474630) ComplexPortal PMID:25474630 NCBI chr11:129,005,365...129,078,581
Ensembl chr11:132,865,349...132,935,590 		JBrowse link
G NCAPG non-SMC condensin I complex subunit G located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:12,232,614...12,265,320
Ensembl chr 4:17,524,826...17,571,798 		JBrowse link
G NCAPG2 non-SMC condensin II complex subunit G2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:150,441,385...150,513,391
Ensembl chr 7:161,905,762...161,977,093 		JBrowse link
G NCAPH non-SMC condensin I complex subunit H located_in ISO (PMID:25474630) ComplexPortal PMID:25474630 NCBI chr2A:102,939,357...102,980,091
Ensembl chr2A:97,258,412...97,299,906 		JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 located_in IEA Ensembl GO_REF:0000107 NCBI chr22:30,754,994...30,771,103
Ensembl chr22:49,873,223...49,881,027 		JBrowse link
G NEK2 NIMA related kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:187,225,947...187,243,605
Ensembl chr 1:192,092,885...192,105,737 		JBrowse link
G NIFK nucleolar protein interacting with the FHA domain of MKI67 located_in IEA Ensembl GO_REF:0000107 NCBI chr2B:38,524,416...38,534,302
Ensembl chr2B:122,413,494...122,422,953 		JBrowse link
G NOL6 nucleolar protein 6 located_in ISO (PMID:11895476) UniProt PMID:11895476 NCBI chr 9:33,242,163...33,291,503
Ensembl chr 9:34,053,100...34,100,854 		JBrowse link
G PSMC3IP PSMC3 interacting protein located_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:14,738,205...14,744,215
Ensembl chr17:14,961,602...14,967,639 		JBrowse link
G RAD21 RAD21 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:113,520,456...113,549,339
Ensembl chr 8:116,063,503...116,092,421 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:1,385,935...1,413,301
Ensembl chr20:1,153,384...1,231,383 		JBrowse link
G RAD50 RAD50 double strand break repair protein located_in ISO
IEA		 sex vesicles/chromatin of XY bivalent RGD
TreeGrafter		 PMID:10855503 GO_REF:0000118 RGD:2300257 NCBI chr 5:127,972,630...128,059,911
Ensembl chr 5:134,134,495...134,222,261 		JBrowse link
G RAD51 RAD51 recombinase located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:19,638,310...19,672,474
Ensembl chr15:37,891,056...37,925,207 		JBrowse link
G RCC1 regulator of chromosome condensation 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:27,784,488...27,806,728
Ensembl chr 1:28,820,815...28,841,773 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr14:4,948,100...4,956,492
Ensembl chr14:23,071,724...23,079,948 		JBrowse link
G RPA1 replication protein A1 located_in ISO (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254) MGI PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 NCBI chr17:1,813,610...1,886,093
Ensembl chr17:1,705,380...1,775,596 		JBrowse link
G RRS1 ribosome biogenesis regulator 1 homolog located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:62,972,274...62,974,004
Ensembl chr 8:64,638,713...64,639,810 		JBrowse link
G RSPH1 radial spoke head component 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr21:28,779,994...28,804,130
Ensembl chr21:42,098,212...42,121,610 		JBrowse link
G SHOC1 shortage in chiasmata 1 located_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:82,816,269...82,916,515
Ensembl chr 9:110,978,485...111,085,856 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr22:26,229,904...26,299,559
Ensembl chr22:44,410,118...44,479,513 		JBrowse link
G SMC2 structural maintenance of chromosomes 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:75,273,163...75,323,486
Ensembl chr 9:103,402,967...103,449,949 		JBrowse link
G SMC4 structural maintenance of chromosomes 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:157,421,548...157,456,593
Ensembl chr 3:165,469,567...165,504,967 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,215,064...92,249,202
Ensembl chr 7:105,648,425...105,681,850 		JBrowse link
G SUN2 Sad1 and UNC84 domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr22:19,649,993...19,671,340
Ensembl chr22:37,466,953...37,487,779 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:87,565,888...87,701,530
Ensembl chr 1:122,614,520...122,754,137 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISO (PMID:18316482), (PMID:21621532), (PMID:22863743), (PMID:24589552), (PMID:24891606) MGI PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728 		JBrowse link
G TEX11 testis expressed 11 located_in ISO (PMID:18316482) MGI PMID:18316482 NCBI chr  X:59,796,821...60,175,517
Ensembl chr  X:69,877,751...70,233,320 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:130,667,998...130,729,569
Ensembl chr 3:138,143,893...138,203,363 		JBrowse link
G TTN titin located_in ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr2B:65,783,512...66,064,618 JBrowse link
G TUBG1 tubulin gamma 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,701,795...14,707,404
Ensembl chr17:14,925,451...14,931,340 		JBrowse link
delta DNA polymerase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLD1 DNA polymerase delta 1, catalytic subunit part_of ISO
IEA		 RGD
TreeGrafter
UniProt
Ensembl		 PMID:10541966 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 RGD:729526 NCBI chr19:47,347,919...47,381,772
Ensembl chr19:56,251,356...56,297,611 		JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit part_of ISO
IEA		 RGD
TreeGrafter
UniProt
Ensembl		 PMID:10541966 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 RGD:729526 NCBI chr 7:44,829,040...44,837,928
Ensembl chr 7:44,896,320...44,905,393 		JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr11:69,665,642...69,715,879
Ensembl chr11:72,969,844...73,018,295 		JBrowse link
G POLD4 DNA polymerase delta 4, accessory subunit part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:62,709,988...62,712,038
Ensembl chr11:66,022,395...66,024,442 		JBrowse link
G SPIB Spi-B transcription factor part_of IEA UniProt
TreeGrafter		 GO_REF:0000117 GO_REF:0000118 NCBI chr19:47,382,653...47,395,178
Ensembl chr19:56,251,356...56,297,611 		JBrowse link
DNA replication factor A complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCAS2 BCAS2 pre-mRNA processing factor part_of
located_in		 IEA
ISO		 (PMID:24332808) Ensembl
UniProt		 PMID:24332808 GO_REF:0000107 NCBI chr 1:87,972,721...87,986,819
Ensembl chr 1:123,024,910...123,039,068 		JBrowse link
G CDC5L cell division cycle 5 like part_of
located_in		 IEA
ISO		 (PMID:24332808) Ensembl
UniProt		 PMID:24332808 GO_REF:0000107 NCBI chr 6:43,983,840...44,043,029
Ensembl chr 6:45,265,845...45,326,383 		JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease located_in ISO (PMID:7700386) UniProt PMID:7700386 NCBI chr13:84,005,950...84,036,710
Ensembl chr13:103,096,344...103,174,182 		JBrowse link
G HELB DNA helicase B part_of
located_in		 IEA
ISO		 (PMID:26774285) Ensembl
UniProt		 PMID:26774285 GO_REF:0000107 NCBI chr12:22,571,448...22,607,417
Ensembl chr12:23,078,732...23,114,134 		JBrowse link
G PLRG1 pleiotropic regulator 1 part_of
located_in		 IEA
ISO		 (PMID:24332808) Ensembl
UniProt		 PMID:24332808 GO_REF:0000107 NCBI chr 4:146,900,494...146,917,016
Ensembl chr 4:158,719,568...158,735,103 		JBrowse link
G PRPF19 pre-mRNA processing factor 19 part_of
located_in		 IEA
ISO		 (PMID:24332808) Ensembl
UniProt		 PMID:24332808 GO_REF:0000107 NCBI chr11:56,153,965...56,169,821
Ensembl chr11:59,595,120...59,607,828 		JBrowse link
G RPA1 replication protein A1 part_of ISO
IEA		 RGD
Ensembl		 PMID:7503737 PMID:8463251 GO_REF:0000107 RGD:2307012 RGD:2307013 NCBI chr17:1,813,610...1,886,093
Ensembl chr17:1,705,380...1,775,596 		JBrowse link
G RPA2 replication protein A2 part_of ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:7503737 PMID:8463251 GO_REF:0000107 GO_REF:0000118 RGD:2307012 RGD:2307013 NCBI chr 1:27,151,784...27,175,110
Ensembl chr 1:28,191,731...28,214,666 		JBrowse link
G RPA3 replication protein A3 part_of ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:7503737 GO_REF:0000107 GO_REF:0000118 RGD:2307013 NCBI chr 7:8,361,623...8,365,098
Ensembl chr 7:7,713,629...7,717,169 		JBrowse link
G RPA4 replication protein A4 part_of ISO (PMID:19116208)
(PMID:7760808)		 UniProt
ComplexPortal		 PMID:7760808 PMID:19116208 NCBI chr  X:86,114,330...86,116,687 JBrowse link
G SMARCAL1 SNF2 related chromatin remodeling annealing helicase 1 part_of
located_in		 IEA
ISO		 (PMID:19793862), (PMID:19793863) Ensembl
UniProt		 PMID:19793862 PMID:19793863 GO_REF:0000107 NCBI chr2B:103,672,934...103,743,802
Ensembl chr2B:222,276,353...222,347,258 		JBrowse link
G TONSL tonsoku like, DNA repair protein part_of
located_in		 IEA
ISO		 (PMID:21055983) Ensembl
UniProt		 PMID:21055983 GO_REF:0000107 NCBI chr 8:141,195,959...141,211,849
Ensembl chr 8:144,185,674...144,201,040 		JBrowse link
G XPA XPA, DNA damage recognition and repair factor part_of
located_in		 IEA
ISO		 (PMID:7700386) Ensembl
UniProt		 PMID:7700386 GO_REF:0000107 NCBI chr 9:68,726,723...68,788,049
Ensembl chr 9:96,886,795...96,909,254 		JBrowse link
epsilon DNA polymerase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLE DNA polymerase epsilon, catalytic subunit part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr12:129,975,750...130,038,402
Ensembl chr12:134,695,976...134,758,650 		JBrowse link
G POLE2 DNA polymerase epsilon 2, accessory subunit part_of IEA InterPro
TreeGrafter
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr14:30,222,957...30,268,455
Ensembl chr14:48,531,945...48,576,700 		JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:84,509,237...84,512,651
Ensembl chr 9:112,879,047...112,882,951 		JBrowse link
G POLE4 DNA polymerase epsilon 4, accessory subunit part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:75,023,087...75,034,178
Ensembl chr2A:76,526,385...76,537,463 		JBrowse link
GINS complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GINS1 GINS complex subunit 1 part_of IEA Ensembl
TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr20:25,352,711...25,393,926
Ensembl chr20:25,757,555...25,797,829 		JBrowse link
G GINS2 GINS complex subunit 2 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:66,344,706...66,356,079
Ensembl chr16:85,681,716...85,691,626 		JBrowse link
G GINS3 GINS complex subunit 3 part_of IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr16:38,653,876...38,672,154
Ensembl chr16:57,790,392...57,801,904 		JBrowse link
G GINS4 GINS complex subunit 4 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:40,774,253...40,790,609
Ensembl chr 8:38,224,907...38,240,562 		JBrowse link
G SLC5A8 solute carrier family 5 member 8 part_of IEA Ensembl GO_REF:0000107 NCBI chr12:98,735,175...98,795,478
Ensembl chr12:102,137,701...102,198,148 		JBrowse link
Ino80 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A part_of IEA Ensembl GO_REF:0000107 NCBI chr 3:176,595,149...176,620,556
Ensembl chr 3:184,765,523...184,790,983 		JBrowse link
G ACTR5 actin related protein 5 part_of IEA Ensembl GO_REF:0000107 NCBI chr20:35,073,297...35,097,955
Ensembl chr20:36,181,343...36,204,996 		JBrowse link
G ACTR8 actin related protein 8 part_of IEA Ensembl GO_REF:0000107 NCBI chr 3:53,802,916...53,820,244
Ensembl chr 3:55,027,468...55,041,182 		JBrowse link
G INO80 INO80 complex ATPase subunit part_of IEA InterPro
TreeGrafter
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr15:19,920,980...20,058,117
Ensembl chr15:38,170,982...38,307,311 		JBrowse link
G INO80B INO80 complex subunit B part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:74,521,624...74,524,578
Ensembl chr2A:76,027,621...76,030,549 		JBrowse link
G INO80C INO80 complex subunit C part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr18:28,686,112...28,715,946
Ensembl chr18:32,260,924...32,304,152 		JBrowse link
G INO80D INO80 complex subunit D part_of IEA Ensembl GO_REF:0000107 NCBI chr2B:93,233,672...93,325,871
Ensembl chr2B:211,373,993...211,433,124 		JBrowse link
G INO80E INO80 complex subunit E part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 Ensembl chr16:30,369,610...30,379,198 JBrowse link
G MCRS1 microspherule protein 1 part_of IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr12:39,183,112...39,192,925
Ensembl chr12:40,073,860...40,083,655 		JBrowse link
G NFRKB nuclear factor related to kappaB binding protein part_of
located_in		 IEA
ISO		 (PMID:18922472) InterPro
UniProt
Ensembl		 PMID:18922472 GO_REF:0000002 GO_REF:0000107 NCBI chr11:124,676,456...124,708,349
Ensembl chr11:128,572,240...128,601,779 		JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 3:125,120,524...125,200,859
Ensembl chr 3:132,486,229...132,528,918 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr19:45,995,394...46,017,835
Ensembl chr19:54,739,474...54,761,407 		JBrowse link
G TFPT TCF3 fusion partner part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:51,039,142...51,048,346
Ensembl chr19:59,879,141...59,891,335 		JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 part_of
located_in		 IEA
ISO		 (PMID:18922472) Ensembl
UniProt
InterPro		 PMID:18922472 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:168,471,501...168,519,366
Ensembl chr 1:172,764,606...172,811,880 		JBrowse link
G YY1 YY1 transcription factor part_of ISO (PMID:18026119), (PMID:21303910) UniProt PMID:18026119 PMID:21303910 NCBI chr14:80,859,491...80,903,651 JBrowse link
G YY1AP1 YY1 associated protein 1 part_of
located_in		 IEA
ISO		 (PMID:27939641) Ensembl
UniProt		 PMID:27939641 GO_REF:0000107 NCBI chr 1:130,995,949...131,024,985
Ensembl chr 1:134,594,908...134,623,588 		JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase located_in IEA Ensembl GO_REF:0000107 NCBI chr15:69,407,248...69,508,070
Ensembl chr15:88,607,157...88,707,864 		JBrowse link
G BRCA1 BRCA1 DNA repair associated located_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,197,946...14,279,064
Ensembl chr17:14,428,526...14,506,815 		JBrowse link
G BRCA2 BRCA2 DNA repair associated located_in IEA Ensembl GO_REF:0000107 NCBI chr13:13,574,422...13,658,967
Ensembl chr13:32,010,066...32,091,332 		JBrowse link
G DMC1 DNA meiotic recombinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr22:19,433,989...19,485,804
Ensembl chr22:37,253,609...37,305,769 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr11:57,488,790...57,519,552
Ensembl chr11:60,846,199...60,874,540 		JBrowse link
G KASH5 KASH domain containing 5 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:46,402,586...46,432,002
Ensembl chr19:55,325,640...55,353,721 		JBrowse link
G MEI4 meiotic double-stranded break formation protein 4 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:75,500,343...75,769,319
Ensembl chr 6:78,783,853...79,047,119 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:1,385,935...1,413,301
Ensembl chr20:1,153,384...1,231,383 		JBrowse link
G RAD51 RAD51 recombinase located_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,638,310...19,672,474
Ensembl chr15:37,891,056...37,925,207 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr14:4,948,100...4,956,492
Ensembl chr14:23,071,724...23,079,948 		JBrowse link
G RPA1 replication protein A1 located_in ISO (PMID:21743440), (PMID:22711701) MGI PMID:21743440 PMID:22711701 NCBI chr17:1,813,610...1,886,093
Ensembl chr17:1,705,380...1,775,596 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A ISO MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chr  X:45,576,100...45,637,314
Ensembl chr  X:53,697,154...53,745,636 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr22:26,229,904...26,299,559
Ensembl chr22:44,410,118...44,479,513 		JBrowse link
G SMC3 structural maintenance of chromosomes 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:107,164,086...107,201,220
Ensembl chr10:110,613,824...110,653,075 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,215,064...92,249,202
Ensembl chr 7:105,648,425...105,681,850 		JBrowse link
G SYCP2 synaptonemal complex protein 2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:56,219,579...56,289,382
Ensembl chr20:57,571,935...57,629,016 		JBrowse link
G SYCP2L synaptonemal complex protein 2 like located_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:10,611,051...10,834,913
Ensembl chr 6:10,867,833...10,879,787 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISO PMID:9933407
(PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 UniProt
MGI		 PMID:9933407 PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 More... RGD:11035335 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728 		JBrowse link
nuclear origin of replication recognition complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRWD1 leucine rich repeats and WD repeat domain containing 1 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:94,605,364...94,613,348 JBrowse link
G MCM2 minichromosome maintenance complex component 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr 3:124,643,362...124,667,121
Ensembl chr 3:131,950,887...131,974,641 		JBrowse link
G ORC1 origin recognition complex subunit 1 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:51,630,344...51,666,327
Ensembl chr 1:53,238,377...53,273,653 		JBrowse link
G ORC2 origin recognition complex subunit 2 part_of IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:88,166,351...88,221,618
Ensembl chr2B:206,325,661...206,380,647 		JBrowse link
G ORC3 origin recognition complex subunit 3 part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:85,466,928...85,552,619
Ensembl chr 6:88,741,362...88,829,801 		JBrowse link
G ORC4 origin recognition complex subunit 4 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:11,841,808...11,931,620
Ensembl chr2B:152,292,822...152,379,487 		JBrowse link
G ORC5 origin recognition complex subunit 5 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:96,118,272...96,197,216
Ensembl chr 7:108,861,281...108,939,389 		JBrowse link
G ORC6 origin recognition complex subunit 6 part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr16:26,954,596...26,962,780
Ensembl chr16:45,846,747...45,854,836 		JBrowse link
nuclear replication fork term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ1B bromodomain adjacent to zinc finger domain 1B located_in IEA Ensembl GO_REF:0000107 Ensembl chr 7:80,594,626...80,675,709 JBrowse link
G CARM1 coactivator associated arginine methyltransferase 1 located_in
is_active_in		 IEA
ISO		 (PMID:33412112) Ensembl
UniProt		 PMID:33412112 GO_REF:0000107 NCBI chr19:10,424,993...10,476,702
Ensembl chr19:11,144,733...11,195,948 		JBrowse link
G ETAA1 ETAA1 activator of ATR kinase located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:67,455,668...67,470,509
Ensembl chr2A:68,578,554...68,591,534 		JBrowse link
G MCM10 minichromosome maintenance 10 replication initiation factor located_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:13,165,811...13,215,024
Ensembl chr10:13,138,824...13,187,991 		JBrowse link
G MMS22L MMS22 like, DNA repair protein located_in
is_active_in		 IEA
ISO		 (PMID:27797818) Ensembl
TreeGrafter
UniProt		 PMID:27797818 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:94,989,906...95,127,260
Ensembl chr 6:98,861,299...99,011,773 		JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 located_in
is_active_in		 IEA
ISO		 (PMID:33412112) Ensembl
UniProt		 PMID:33412112 GO_REF:0000107 NCBI chr 1:201,820,355...201,867,673
Ensembl chr 1:206,812,981...206,860,356 		JBrowse link
G PCNA proliferating cell nuclear antigen located_in IEA Ensembl GO_REF:0000107 NCBI chr20:5,134,930...5,146,603
Ensembl chr20:4,927,731...4,939,440 		JBrowse link
G SMARCA5 SNF2 related chromatin remodeling ATPase 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809 		JBrowse link
G SMARCAD1 SNF2 related chromatin remodeling ATPase with DExD box 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:86,567,722...86,651,527
Ensembl chr 4:97,240,614...97,324,366 		JBrowse link
G SMARCAL1 SNF2 related chromatin remodeling annealing helicase 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:103,672,934...103,743,802
Ensembl chr2B:222,276,353...222,347,258 		JBrowse link
G TONSL tonsoku like, DNA repair protein located_in
is_active_in		 IEA
ISO		 (PMID:26527279), (PMID:29478807) Ensembl
TreeGrafter
UniProt		 PMID:26527279 PMID:29478807 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:141,195,959...141,211,849
Ensembl chr 8:144,185,674...144,201,040 		JBrowse link
G TREX1 three prime repair exonuclease 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:48,387,762...48,389,693
Ensembl chr 3:49,470,222...49,471,331 		JBrowse link
G WDHD1 WD repeat and HMG-box DNA binding protein 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:35,528,981...35,614,145
Ensembl chr14:53,807,684...53,889,703 		JBrowse link
G ZMIZ2 zinc finger MIZ-type containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:45,462,031...45,482,209
Ensembl chr 7:45,532,224...45,552,081 		JBrowse link
G ZRANB3 zinc finger RANBP2-type containing 3 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:24,331,731...24,665,652
Ensembl chr2B:139,234,909...139,577,193 		JBrowse link
nucleolus organizer region term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT7 sirtuin 7 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:76,317,560...76,323,761
Ensembl chr17:82,020,077...82,026,289 		JBrowse link
perichromatin fibrils term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLOCK clock circadian regulator ISO RGD PMID:16208722 RGD:10401943 NCBI chr 4:68,391,310...68,509,813
Ensembl chr 4:75,018,898...75,066,726 		JBrowse link
G CPSF6 cleavage and polyadenylation specific factor 6 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:66,750,301...66,785,104
Ensembl chr12:69,535,302...69,550,789 		JBrowse link
G DHX9 DExH-box helicase 9 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:158,355,472...158,404,178
Ensembl chr 1:162,006,822...162,055,833 		JBrowse link
G NUFIP1 nuclear FMR1 interacting protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:26,106,480...26,156,325
Ensembl chr 3:197,915,448...197,962,867 		JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 located_in ISO (PMID:10318760) MGI PMID:10318760 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952 		JBrowse link
G SRSF2 serine and arginine rich splicing factor 2 ISO MMO:0000663 RGD PMID:19321046 RGD:150429709 NCBI chr17:70,809,931...70,813,191
Ensembl chr17:76,375,957...76,379,759 		JBrowse link
G TARDBP TAR DNA binding protein ISO RGD PMID:19539030 RGD:5687141 NCBI chr 1:9,775,084...9,786,710
Ensembl chr 1:10,996,006...11,008,732 		JBrowse link
G TRIM24 tripartite motif containing 24 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:130,420,334...130,547,489
Ensembl chr 7:142,909,009...143,036,526 		JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:75,011,947...75,130,036
Ensembl chr 1:76,983,852...77,099,896 		JBrowse link
replication fork protection complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TIMELESS timeless circadian regulator part_of IEA TreeGrafter GO_REF:0000118 NCBI chr12:32,465,529...32,497,581
Ensembl chr12:32,718,649...32,750,728 		JBrowse link
G TIPIN TIMELESS interacting protein part_of IEA TreeGrafter GO_REF:0000118 NCBI chr15:45,290,350...45,310,335
Ensembl chr15:63,566,463...63,585,717 		JBrowse link
Rpd3L-Expanded complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KMT2E lysine methyltransferase 2E (inactive) part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 7:97,001,250...97,099,956
Ensembl chr 7:109,734,808...109,832,851 		JBrowse link
G SETD5 SET domain containing 5 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 3:9,350,026...9,430,760
Ensembl chr 3:9,592,517...9,672,306 		JBrowse link
Set3 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KMT2E lysine methyltransferase 2E (inactive) part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 7:97,001,250...97,099,956
Ensembl chr 7:109,734,808...109,832,851 		JBrowse link
G SETD5 SET domain containing 5 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 3:9,350,026...9,430,760
Ensembl chr 3:9,592,517...9,672,306 		JBrowse link
Sin3-type complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSNK2A1 casein kinase 2 alpha 1 part_of ISO (PMID:17827154) BHF-UCL PMID:17827154 NCBI chr20:689,494...752,092
Ensembl chr20:456,629...521,126 		JBrowse link
G HDAC1 histone deacetylase 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:31,578,373...31,619,970
Ensembl chr 1:32,585,791...32,626,410 		JBrowse link
G HDAC2 histone deacetylase 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:111,731,139...111,761,826
Ensembl chr 6:115,802,367...115,833,004 		JBrowse link
G ING2 inhibitor of growth family member 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:175,683,040...175,689,646
Ensembl chr 4:187,909,495...187,915,674 		JBrowse link
G MORF4L1 mortality factor 4 like 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr15:57,844,220...57,869,139
Ensembl chr15:76,772,007...76,829,259 		JBrowse link
G PHF12 PHD finger protein 12 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:27,822,649...27,868,703
Ensembl chr17:28,331,701...28,377,943 		JBrowse link
G SAP130 Sin3A associated protein 130 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr2B:32,243,576...32,332,080
Ensembl chr2B:128,609,262...128,696,505 		JBrowse link
G SIN3A SIN3 transcription regulator family member A part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:54,285,587...54,371,376
Ensembl chr15:73,881,500...73,966,506 		JBrowse link
G SIN3B SIN3 transcription regulator family member B part_of IEA TreeGrafter GO_REF:0000118 NCBI chr19:16,317,329...16,367,320
Ensembl chr19:17,296,161...17,345,533 		JBrowse link
G SINHCAF SIN3-HDAC complex associated factor part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:54,914,625...54,960,258
Ensembl chr12:57,498,428...57,544,489 		JBrowse link
G SUDS3 SDS3 homolog, SIN3A corepressor complex component part_of ISO (PMID:11909966) UniProt PMID:11909966 NCBI chr12:115,957,736...115,999,217
Ensembl chr12:119,336,258...119,377,030 		JBrowse link
Slx1-Slx4 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit part_of IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118
G SLX4 SLX4 structure-specific endonuclease subunit part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr16:2,502,334...2,532,172
Ensembl chr16:3,678,018...3,707,842 		JBrowse link
Swi5-Sfr1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFR1 SWI5 dependent homologous recombination repair protein 1 part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr10:100,721,780...100,726,204
Ensembl chr10:104,180,672...104,184,880 		JBrowse link
G SWI5 SWI5 homologous recombination repair protein part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 9:99,396,439...99,410,054
Ensembl chr 9:128,064,569...128,078,380 		JBrowse link
Swi5-Swi2 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SWI5 SWI5 homologous recombination repair protein part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 9:99,396,439...99,410,054
Ensembl chr 9:128,064,569...128,078,380 		JBrowse link
Swr1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANP32E acidic nuclear phosphoprotein 32 family member E part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:125,563,953...125,581,396
Ensembl chr 1:129,220,730...129,233,218 		JBrowse link
G BRD8 bromodomain containing 8 part_of IEA Ensembl GO_REF:0000107 NCBI chr 5:133,535,321...133,557,304
Ensembl chr 5:139,652,112...139,690,468 		JBrowse link
G CFDP1 craniofacial development protein 1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr16:55,864,016...56,003,243
Ensembl chr16:75,214,588...75,351,811 		JBrowse link
G DMAP1 DNA methyltransferase 1 associated protein 1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 1:43,516,839...43,524,206
Ensembl chr 1:44,886,307...44,893,598 		JBrowse link
G ING3 inhibitor of growth family member 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:112,955,848...112,984,473
Ensembl chr 7:125,643,332...125,671,566 		JBrowse link
G KAT5 lysine acetyltransferase 5 part_of IEA Ensembl GO_REF:0000107 NCBI chr11:61,071,118...61,078,667
Ensembl chr11:64,404,572...64,412,667 		JBrowse link
G LOC100971447 E1A-binding protein p400 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:129,606,823...129,737,179
Ensembl chr12:134,045,829...134,163,185 		JBrowse link
G LOC100979122 acidic leucine-rich nuclear phosphoprotein 32 family member E part_of IEA Ensembl GO_REF:0000107 NCBI chr11:31,284,442...31,285,827
Ensembl chr 1:129,220,730...129,233,218 		JBrowse link
G LOC103785403 putative EP400-like protein part_of IEA TreeGrafter GO_REF:0000118 NCBI chr12:129,742,208...129,785,719 JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 3:125,120,524...125,200,859
Ensembl chr 3:132,486,229...132,528,918 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr19:45,995,394...46,017,835
Ensembl chr19:54,739,474...54,761,407 		JBrowse link
G SRCAP Snf2 related CREBBP activator protein part_of IEA TreeGrafter GO_REF:0000118 NCBI chr16:24,229,869...24,271,427
Ensembl chr16:31,065,964...31,106,312 		JBrowse link
G TRRAP transformation/transcription domain associated protein part_of ISO (PMID:24463511) UniProt PMID:24463511 NCBI chr 7:90,845,518...90,981,700
Ensembl chr 7:104,351,320...104,486,722 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1IP1 cyclin B1 interacting protein 1 located_in IEA InterPro GO_REF:0000002 NCBI chr14:1,182,025...1,205,471
Ensembl chr14:19,235,987...19,258,663 		JBrowse link
G FAM9A family with sequence similarity 9 member A located_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:1,309,417...1,318,806
Ensembl chr  X:8,685,789...8,693,707 		JBrowse link
G FAM9B family with sequence similarity 9 member B located_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:1,620,668...1,629,061
Ensembl chr  X:8,910,872...8,920,840 		JBrowse link
G FAM9C family with sequence similarity 9 member C located_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:5,647,848...5,657,551
Ensembl chr  X:12,936,617...12,945,919 		JBrowse link
G FKBP6 FKBP prolyl isomerase family member 6 (inactive) located_in ISO (PMID:12764197) UniProt PMID:12764197 Ensembl chr 7:80,481,443...80,511,813 JBrowse link
G HORMAD1 HORMA domain containing 1 located_in ISO (PMID:22854038) MGI PMID:22854038 NCBI chr 1:126,054,585...126,077,361
Ensembl chr 1:129,704,451...129,726,691 		JBrowse link
G HORMAD2 HORMA domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr22:11,113,654...11,213,291
Ensembl chr22:28,920,640...29,015,949 		JBrowse link
G HSPA2 heat shock protein family A (Hsp70) member 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:45,124,326...45,127,105
Ensembl chr14:63,373,840...63,375,762 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr11:57,488,790...57,519,552
Ensembl chr11:60,846,199...60,874,540 		JBrowse link
G LIG3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chr17:21,776,483...21,805,706
Ensembl chr17:22,074,046...22,095,220 		JBrowse link
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801 		JBrowse link
G MLH3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:55,568,033...55,603,672
Ensembl chr14:74,413,319...74,445,749 		JBrowse link
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:75,011,947...75,130,036
Ensembl chr 1:76,983,852...77,099,896 		JBrowse link
G MSH5 mutS homolog 5 located_in ISO (PMID:16260499) MGI PMID:16260499 NCBI chr 6:31,401,343...31,424,665
Ensembl chr 6:32,290,511...32,311,085 		JBrowse link
G P3H4 prolyl 3-hydroxylase family member 4 (inactive) ISO RGD PMID:1363622 RGD:633987 NCBI chr17:15,500,999...15,511,926 JBrowse link
G PLK1 polo like kinase 1 located_in ISO (PMID:22854038) MGI PMID:22854038 NCBI chr16:14,420,972...14,432,821
Ensembl chr16:23,928,773...23,940,779 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr14:4,948,100...4,956,492
Ensembl chr14:23,071,724...23,079,948 		JBrowse link
G RNF212 ring finger protein 212 located_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:1,167,176...1,259,080
Ensembl chr 4:1,102,342...1,146,153 		JBrowse link
G RNF212B ring finger protein 212B located_in IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr14:4,056,671...4,093,210
Ensembl chr14:22,153,247...22,188,319 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr  X:45,576,100...45,637,314
Ensembl chr  X:53,697,154...53,745,636 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr22:26,229,904...26,299,559
Ensembl chr22:44,410,118...44,479,513 		JBrowse link
G SMC3 structural maintenance of chromosomes 3 ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr10:107,164,086...107,201,220
Ensembl chr10:110,613,824...110,653,075 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,215,064...92,249,202
Ensembl chr 7:105,648,425...105,681,850 		JBrowse link
G SYCE1 synaptonemal complex central element protein 1 located_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 Ensembl chr10:134,866,705...134,878,566 JBrowse link
G SYCE1L synaptonemal complex central element protein 1 like located_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:57,774,445...57,789,221
Ensembl chr16:77,120,694...77,135,476 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in ISO
IEA		 RGD
InterPro
Ensembl		 PMID:8660935 GO_REF:0000002 GO_REF:0000107 RGD:9686370 NCBI chr 1:87,565,888...87,701,530
Ensembl chr 1:122,614,520...122,754,137 		JBrowse link
G SYCP2 synaptonemal complex protein 2 located_in ISO (PMID:18316482), (PMID:26362258) RGD
MGI		 PMID:9592139 PMID:18316482 PMID:26362258 RGD:69387 NCBI chr20:56,219,579...56,289,382
Ensembl chr20:57,571,935...57,629,016 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728 		JBrowse link
G SYN1 synapsin I located_in ISO (PMID:14736746) MGI PMID:14736746 NCBI chr  X:40,007,777...40,055,801 JBrowse link
G TEX11 testis expressed 11 located_in ISO (PMID:18369460) UniProt PMID:18369460 NCBI chr  X:59,796,821...60,175,517
Ensembl chr  X:69,877,751...70,233,320 		JBrowse link
G TEX12 testis expressed 12 located_in ISO (PMID:16968740) MGI PMID:16968740 NCBI chr11:107,048,417...107,053,655
Ensembl chr11:110,817,016...110,896,829 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,215,064...92,249,202
Ensembl chr 7:105,648,425...105,681,850 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:1464329 GO_REF:0000107 GO_REF:0000118 RGD:729937 NCBI chr 1:87,565,888...87,701,530
Ensembl chr 1:122,614,520...122,754,137 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISO (PMID:15870106) MGI PMID:15870106 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20468
    cellular anatomical structure 20035
      membrane-enclosed lumen 5318
        organelle lumen 5318
          intracellular organelle lumen 5317
            nuclear lumen 4814
              nuclear chromosome 222
                Barr body 7
                CMG complex 11
                COMA complex 0
                GINS complex 5
                Ino80 complex 16
                RITS complex 0
                Rpd3L-Expanded complex 2
                Set3 complex 2
                Sin3-type complex + 11
                Slx1-Slx4 complex 2
                Smp focus 0
                Swi5-Sfr1 complex 2
                Swi5-Swi2 complex 1
                Swr1 complex 13
                condensed nuclear chromosome + 84
                epsilon DNA polymerase complex 4
                nuclear origin of replication recognition complex 8
                nuclear replication fork + 37
                nucleolar chromatin + 1
                perichromatin fibrils 8
Path 2
Term Annotations click to browse term
  cellular_component 20468
    cellular anatomical structure 20035
      intracellular anatomical structure 16641
        intracellular organelle 14573
          intracellular membrane-bounded organelle 13019
            nucleus 8876
              nuclear lumen 4814
                nuclear chromosome 222
                  Barr body 7
                  CMG complex 11
                  COMA complex 0
                  GINS complex 5
                  Ino80 complex 16
                  RITS complex 0
                  Rpd3L-Expanded complex 2
                  Set3 complex 2
                  Sin3-type complex + 11
                  Slx1-Slx4 complex 2
                  Smp focus 0
                  Swi5-Sfr1 complex 2
                  Swi5-Swi2 complex 1
                  Swr1 complex 13
                  condensed nuclear chromosome + 84
                  epsilon DNA polymerase complex 4
                  nuclear origin of replication recognition complex 8
                  nuclear replication fork + 37
                  nucleolar chromatin + 1
                  perichromatin fibrils 8
paths to the root