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ONTOLOGY REPORT - ANNOTATIONS

Term:nuclear chromosome
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Accession:GO:0000228 term browser browse the term
Definition:A chromosome that encodes the nuclear genome and is found in the nucleus of a eukaryotic cell during the cell cycle phases when the nucleus is intact.
Synonyms:narrow_synonym: nuclear interphase chromosome


show annotations for term's descendants           Sort by:
nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atrx ATRX, chromatin remodeler located_in IEA
ISO		 GO_REF:0000107
(PMID:11555636)		 Ensembl
RGD		 PMID:11555636 GO_REF:0000107 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330 		JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain, 1A is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:11555636), (PMID:9701556)		 GO_Central
RGD		 PMID:9701556 PMID:11555636 GO_REF:0000033 NCBI chr 6:72,389,701...72,512,516
Ensembl chr 6:72,389,703...72,512,459 		JBrowse link
G Birc5 baculoviral IAP repeat-containing 5 located_in ISO (PMID:16322459) RGD PMID:16322459 NCBI chr10:103,072,530...103,081,382
Ensembl chr10:103,073,408...103,081,380 		JBrowse link
G Blm BLM RecQ like helicase located_in ISO (PMID:23509288) RGD PMID:23509288 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 is_active_in ISO (PMID:9326634) RGD PMID:9326634 NCBI chr 1:56,661,743...56,729,119
Ensembl chr 1:56,664,054...56,728,125 		JBrowse link
G E2f1 E2F transcription factor 1 located_in IDA PMID:24250814 UniProt PMID:24250814 RGD:151356618 NCBI chr 3:143,064,535...143,075,362
Ensembl chr 3:143,049,478...143,075,361 		JBrowse link
G Exosc9 exosome component 9 located_in ISO
ISS		 (PMID:24105744)
GO_REF:0000024		 RGD
UniProt		 PMID:24105744 GO_REF:0000024 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051 		JBrowse link
G Fignl1 fidgetin-like 1 located_in ISO
ISS		 (PMID:23754376)
GO_REF:0000024		 RGD
UniProt		 PMID:23754376 GO_REF:0000024 NCBI chr14:86,368,670...86,381,728
Ensembl chr14:86,368,675...86,377,455 		JBrowse link
G Hcfc1 host cell factor C1 located_in IDA PMID:24250814 UniProt PMID:24250814 RGD:151356618 NCBI chr  X:151,687,779...151,712,688
Ensembl chr  X:151,687,779...151,712,638 		JBrowse link
G Hmga2 high mobility group AT-hook 2 located_in ISS
ISO		 GO_REF:0000024
(PMID:11555636)		 UniProt
RGD		 PMID:11555636 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U located_in ISO
IEA		 (PMID:11003645)
GO_REF:0000107		 RGD
Ensembl		 PMID:11003645 GO_REF:0000107 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Ik IK cytokine located_in ISS
ISO		 GO_REF:0000024
(PMID:24252166)		 UniProt
RGD		 PMID:24252166 GO_REF:0000024 NCBI chr18:28,358,004...28,372,809
Ensembl chr18:28,357,977...28,378,832 		JBrowse link
G Macroh2a1 macroH2A.1 histone located_in ISO (PMID:18936163) RGD PMID:18936163 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 located_in ISO (PMID:12138188) RGD PMID:12138188 NCBI chr 4:157,968,814...157,992,314
Ensembl chr 4:157,968,815...157,992,020 		JBrowse link
G Pinx1 PIN2/TERF1 interacting, telomerase inhibitor 1 located_in ISO
IEA		 (PMID:19393617)
GO_REF:0000107		 RGD
Ensembl		 PMID:19393617 GO_REF:0000107 NCBI chr15:38,097,896...38,157,143
Ensembl chr15:38,097,886...38,157,140 		JBrowse link
G Rad51 RAD51 recombinase located_in ISO (PMID:23754376) RGD PMID:23754376 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Setx senataxin located_in ISO (PMID:24105744) RGD PMID:24105744 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
G Smc2 structural maintenance of chromosomes 2 located_in ISO (PMID:10958694) RGD PMID:10958694 NCBI chr 5:66,806,882...66,853,478
Ensembl chr 5:66,807,011...66,853,242 		JBrowse link
G Spidr scaffold protein involved in DNA repair located_in
is_active_in		 ISO
IBA		 (PMID:23509288)
GO_REF:0000033		 RGD
GO_Central		 PMID:23509288 GO_REF:0000033 NCBI chr11:84,766,593...85,007,597
Ensembl chr11:84,766,593...85,007,600 		JBrowse link
G Spo11 SPO11 initiator of meiotic double strand breaks is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:161,755,299...161,770,930
Ensembl chr 3:161,757,519...161,770,925 		JBrowse link
G Top1 DNA topoisomerase I located_in IEA
ISO		 GO_REF:0000107
(PMID:9049244)		 Ensembl
RGD		 PMID:9049244 GO_REF:0000107 NCBI chr 3:149,293,469...149,376,618
Ensembl chr 3:149,293,403...149,376,623 		JBrowse link
G Top2a DNA topoisomerase II alpha located_in IEA
ISO		 GO_REF:0000107
(PMID:9049244)		 Ensembl
RGD		 PMID:9049244 GO_REF:0000107 NCBI chr10:83,945,731...83,976,874
Ensembl chr10:83,945,735...83,976,874 		JBrowse link
G Zbtb32 zinc finger and BTB domain containing 32 located_in ISO (PMID:11555636) RGD PMID:11555636 NCBI chr 1:85,841,931...85,851,116
Ensembl chr 1:85,841,931...85,844,236 		JBrowse link
alpha DNA polymerase:primase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit part_of IDA
ISO
IBA
IEA
ISS
IC		 (PMID:10523676), (PMID:8026492), (PMID:9584195)
GO_REF:0000114
GO_REF:0000033
(PMID:2175912), (PMID:22465957), (PMID:26975377), (PMID:8026492)
GO_REF:0000107
GO_REF:0000024		 RGD
ComplexPortal
GO_Central
Ensembl
UniProt		 PMID:2175912 PMID:8026492 PMID:9584195 PMID:10523676 PMID:22465957 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000114, RGD:1580605, RGD:2307013 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536 		JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit part_of TAS
ISO
IBA
IEA
ISS
IC		 (PMID:10523676), (PMID:8026492), (PMID:9584195)
GO_REF:0000114
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
(PMID:22465957), (PMID:26975377), (PMID:8026492)		 RGD
ComplexPortal
GO_Central
Ensembl
UniProt		 PMID:8026492 PMID:9584195 PMID:10523676 PMID:22465957 PMID:26975377 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000114, RGD:633584, RGD:2307013 NCBI chr 1:203,227,183...203,251,350
Ensembl chr 1:203,203,388...203,251,348 		JBrowse link
G Prim1 DNA primase subunit 1 part_of ISO (PMID:26975377), (PMID:8026492)
(PMID:10523676), (PMID:8026492)		 RGD PMID:8026492 PMID:10523676 PMID:26975377 NCBI chr 7:446,342...462,526
Ensembl chr 7:431,805...462,526 		JBrowse link
G Prim2 DNA primase subunit 2 part_of ISO
IBA
IEA
ISS		 (PMID:26975377), (PMID:8026492)
GO_REF:0000033
(PMID:10523676), (PMID:8026492)
GO_REF:0000114
GO_REF:0000117
GO_REF:0000024		 RGD
GO_Central
ComplexPortal
UniProt		 PMID:8026492 PMID:10523676 PMID:26975377 GO_REF:0000024 GO_REF:0000033 GO_REF:0000114 GO_REF:0000117 NCBI chr 9:35,692,376...35,904,521
Ensembl chr 9:35,692,376...35,903,030 		JBrowse link
Barr body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2az1 H2A.Z variant histone 1 NOT|located_in ISO (PMID:11331621) RGD PMID:11331621 NCBI chr 2:226,355,668...226,357,984
Ensembl chr 2:226,355,708...226,358,485 		JBrowse link
G H3f3a H3.3 histone A located_in ISO (PMID:15657431) RGD PMID:15657431 NCBI chr13:92,533,289...92,544,902
Ensembl chr13:92,533,298...92,544,908 		JBrowse link
G Lrif1 ligand dependent nuclear receptor interacting factor 1 located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:26391951)
(PMID:23542155)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:23542155 PMID:26391951 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:194,231,397...194,322,489
Ensembl chr 2:194,230,951...194,322,483 		JBrowse link
G Macroh2a1 macroH2A.1 histone located_in ISO (PMID:11331621), (PMID:18936163) RGD PMID:11331621 PMID:18936163 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Macroh2a2 macroH2A.2 histone located_in ISO (PMID:11331621) RGD PMID:11331621 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891 		JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 located_in
is_active_in		 ISO
IBA		 (PMID:23542155)
(PMID:18425126), (PMID:26391951)
GO_REF:0000033		 RGD
GO_Central		 PMID:18425126 PMID:23542155 PMID:26391951 GO_REF:0000033 NCBI chr 9:111,243,445...111,387,272
Ensembl chr 9:111,247,702...111,349,665 		JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Farsa phenylalanyl-tRNA synthetase subunit alpha is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:23,291,409...23,300,985
Ensembl chr19:23,268,869...23,300,980 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:12584241) RGD PMID:12584241 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Six6os1 Six6 opposite strand transcript 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:27796301)		 GO_Central
RGD		 PMID:27796301 GO_REF:0000033 NCBI chr 6:91,579,185...91,615,183
Ensembl chr 6:91,579,325...91,615,148 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in ISO (PMID:15944401), (PMID:22164254) RGD PMID:15944401 PMID:22164254 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce2 synaptonemal complex central element protein 2 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:15944401), (PMID:22164254), (PMID:22854038)		 GO_Central
RGD		 PMID:15944401 PMID:22164254 PMID:22854038 GO_REF:0000033 NCBI chr19:23,266,236...23,291,265
Ensembl chr19:23,268,869...23,300,980 		JBrowse link
G Syce3 synaptonemal complex central element protein 3 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:21637789), (PMID:22164254)		 GO_Central
RGD		 PMID:21637789 PMID:22164254 GO_REF:0000033 NCBI chr 7:120,456,800...120,482,882
Ensembl chr 7:120,456,800...120,482,973 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in
is_active_in		 IEA
ISO
IBA		 GO_REF:0000107
(PMID:12584241), (PMID:23133398)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:12584241 PMID:23133398 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Tex11 testis expressed 11 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:18316482)		 GO_Central
RGD		 PMID:18316482 GO_REF:0000033 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Tex12 testis expressed 12 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:16968740), (PMID:22164254), (PMID:22854038)		 GO_Central
RGD		 PMID:16968740 PMID:22164254 PMID:22854038 GO_REF:0000033 NCBI chr 8:50,908,161...50,913,202
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hus1 HUS1 checkpoint clamp component part_of ISO
IBA		 (PMID:31776186), (PMID:36841485)
GO_REF:0000033		 RGD
GO_Central		 PMID:31776186 PMID:36841485 GO_REF:0000033 NCBI chr14:83,688,702...83,703,466
Ensembl chr14:83,688,708...83,703,442 		JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease part_of ISO
IBA		 (PMID:31776186), (PMID:36841485)
GO_REF:0000033		 RGD
GO_Central		 PMID:31776186 PMID:36841485 GO_REF:0000033 NCBI chr 2:59,461,597...59,469,707
Ensembl chr 2:59,461,607...59,469,689 		JBrowse link
G Rad9a RAD9 checkpoint clamp component A part_of ISO
IBA		 (PMID:31776186), (PMID:36841485)
GO_REF:0000033		 RGD
GO_Central		 PMID:31776186 PMID:36841485 GO_REF:0000033 NCBI chr 1:201,488,511...201,553,582
Ensembl chr 1:201,487,136...201,553,608 		JBrowse link
G Rad9b RAD9 checkpoint clamp component B part_of IEA
IBA		 GO_REF:0000104
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000104 NCBI chr12:34,217,868...34,248,380
Ensembl chr12:34,218,024...34,248,372 		JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:17291760), (PMID:17696610), (PMID:21743440), (PMID:28031483), (PMID:30718482), (PMID:31839538)		 Ensembl
RGD		 PMID:17291760 PMID:17696610 PMID:21743440 PMID:28031483 PMID:30718482 More... GO_REF:0000107 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (PMID:12091911), (PMID:17696610) RGD PMID:12091911 PMID:17696610 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
CMG complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc45 cell division cycle 45 part_of ISO (PMID:22474384) RGD PMID:22474384 NCBI chr11:82,185,427...82,210,630
Ensembl chr11:82,185,473...82,210,619 		JBrowse link
G Gins1 GINS complex subunit 1 part_of ISO (PMID:22474384) RGD PMID:22474384 NCBI chr 3:139,724,513...139,745,930
Ensembl chr 3:139,724,490...139,745,936 		JBrowse link
G Gins2 GINS complex subunit 2 part_of ISO (PMID:22474384) RGD PMID:22474384 NCBI chr19:48,626,770...48,639,523
Ensembl chr19:48,626,770...48,639,339 		JBrowse link
G Gins3 GINS complex subunit 3 part_of ISO (PMID:22474384) RGD PMID:22474384 NCBI chr19:9,420,085...9,428,621
Ensembl chr19:9,420,086...9,428,687 		JBrowse link
G Gins4 GINS complex subunit 4 part_of ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:22474384)		 UniProt
Ensembl
RGD		 PMID:22474384 GO_REF:0000024 GO_REF:0000107 NCBI chr16:68,787,572...68,799,938
Ensembl chr16:68,767,339...68,802,273 		JBrowse link
G Mcm2 minichromosome maintenance complex component 2 part_of ISO (PMID:22474384) RGD PMID:22474384 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847 		JBrowse link
G Mcm3 minichromosome maintenance complex component 3 part_of ISO (PMID:22474384) RGD PMID:22474384 NCBI chr 9:23,219,169...23,237,314
Ensembl chr 9:23,219,169...23,237,314 		JBrowse link
G Mcm4 minichromosome maintenance complex component 4 part_of ISO (PMID:22474384) RGD PMID:22474384 NCBI chr11:85,258,443...85,272,144
Ensembl chr11:85,258,443...85,272,144 		JBrowse link
G Mcm5 minichromosome maintenance complex component 5 part_of ISO (PMID:22474384) RGD PMID:22474384 NCBI chr19:13,483,030...13,504,389
Ensembl chr19:13,483,066...13,504,389 		JBrowse link
G Mcm6 minichromosome maintenance complex component 6 part_of ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:22474384)		 UniProt
Ensembl
RGD		 PMID:22474384 GO_REF:0000024 GO_REF:0000107 NCBI chr13:39,826,745...39,851,937
Ensembl chr13:39,826,763...39,851,960 		JBrowse link
G Mcm7 minichromosome maintenance complex component 7 part_of ISO (PMID:22474384) RGD PMID:22474384 NCBI chr12:17,042,207...17,049,470
Ensembl chr12:17,042,212...17,050,063 		JBrowse link
condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Add3 adducin 3 located_in ISO (PMID:1864459) RGD PMID:1864459 NCBI chr 1:252,147,341...252,255,126
Ensembl chr 1:252,147,386...252,255,124 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 located_in ISO (PMID:22863743) RGD PMID:22863743 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230 		JBrowse link
G Brca1 BRCA1, DNA repair associated located_in ISO (PMID:20551173), (PMID:26490168) RGD PMID:20551173 PMID:26490168 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Brd4 bromodomain containing 4 located_in ISO (PMID:10938129)
(PMID:10938129), (PMID:16339075), (PMID:18039861)		 RGD PMID:10938129 PMID:16339075 PMID:18039861 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in ISO (PMID:24891606) RGD PMID:24891606 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475 		JBrowse link
G Cdx2 caudal type homeo box 2 located_in ISO (PMID:15509711) RGD PMID:15509711 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Chek1 checkpoint kinase 1 located_in ISO
ISS		 (PMID:9382850)
GO_REF:0000024		 RGD
UniProt		 PMID:9382850 GO_REF:0000024 NCBI chr 8:36,420,565...36,443,477
Ensembl chr 8:36,420,569...36,441,009 		JBrowse link
G Chmp1a charged multivesicular body protein 1A located_in ISO (PMID:11559747) RGD PMID:11559747 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254), (PMID:22530760), (PMID:22711701), (PMID:27760146)		 GO_Central
RGD		 PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 PMID:22530760 More... GO_REF:0000033 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like located_in IEA
ISO		 GO_REF:0000107
(PMID:16543361)		 Ensembl
RGD		 PMID:16543361 GO_REF:0000107 NCBI chr20:10,614,933...10,629,337
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G H1f6 H1.6 linker histone, cluster member located_in ISO (PMID:18316482) RGD PMID:18316482 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119 		JBrowse link
G H2ax H2A.X variant histone located_in ISO (PMID:20551173), (PMID:22164254), (PMID:22711701), (PMID:23555294), (PMID:26490168) RGD PMID:20551173 PMID:22164254 PMID:22711701 PMID:23555294 PMID:26490168 NCBI chr 8:44,671,907...44,673,262
Ensembl chr 8:44,671,786...44,673,239
Ensembl chr 4:44,671,786...44,673,239 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (PMID:22164254), (PMID:22530760) RGD PMID:22164254 PMID:22530760 NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383 		JBrowse link
G Iho1 interactor of HORMAD1 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:27723721)		 GO_Central
RGD		 PMID:27723721 GO_REF:0000033 NCBI chr 8:109,091,134...109,126,386
Ensembl chr 8:109,092,758...109,125,434 		JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO (PMID:16298999) RGD PMID:16298999 NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) RGD PMID:9001252 NCBI chr10:67,717,808...67,741,141
Ensembl chr10:67,717,812...67,798,414 		JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:12762840)		 HGNC-UCL
Ensembl
RGD		 PMID:12762840 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:9,859,816...9,942,294
Ensembl chr 6:9,859,867...9,942,293 		JBrowse link
G Mlh1 mutL homolog 1 located_in ISO (PMID:18316482), (PMID:23555294), (PMID:24891606) RGD PMID:18316482 PMID:23555294 PMID:24891606 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (PMID:24891606) RGD PMID:24891606 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease IDA sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO (PMID:18316482), (PMID:22164254), (PMID:23555294) RGD PMID:18316482 PMID:22164254 PMID:23555294 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 4:157,968,814...157,992,314
Ensembl chr 4:157,968,815...157,992,020 		JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 8:25,437,067...25,506,375
Ensembl chr 8:25,437,123...25,506,373 		JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 6:137,342,449...137,418,083
Ensembl chr 6:137,342,943...137,415,159 		JBrowse link
G Ncaph non-SMC condensin I complex, subunit H located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 3:114,371,937...114,399,178
Ensembl chr 3:114,371,941...114,399,180 		JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 located_in IEA
ISO		 GO_REF:0000107
(PMID:25474630)		 Ensembl
RGD		 PMID:25474630 GO_REF:0000107 NCBI chr 7:120,422,926...120,439,942
Ensembl chr 7:120,422,956...120,439,938 		JBrowse link
G Nek2 NIMA-related kinase 2 located_in ISO (PMID:15479717) RGD PMID:15479717 NCBI chr13:103,405,818...103,419,063
Ensembl chr13:103,405,819...103,419,051 		JBrowse link
G Nifk nucleolar protein interacting with the FHA domain of MKI67 located_in ISO
IEA		 (PMID:11342549)
GO_REF:0000107		 RGD
Ensembl		 PMID:11342549 GO_REF:0000107 NCBI chr13:29,393,303...29,403,387
Ensembl chr13:29,393,286...29,405,896 		JBrowse link
G Nol6 nucleolar protein 6 located_in ISO (PMID:11895476) RGD PMID:11895476 NCBI chr 5:56,259,919...56,270,540
Ensembl chr 5:56,260,830...56,270,336 		JBrowse link
G Psmc3ip PSMC3 interacting protein is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:86,024,281...86,027,928
Ensembl chr10:86,023,950...86,027,423 		JBrowse link
G Rad21 RAD21 cohesin complex component located_in ISO (PMID:24797475) RGD PMID:24797475 NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO (PMID:24797475) RGD PMID:24797475 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298 		JBrowse link
G Rad50 RAD50 double strand break repair protein is_active_in IDA
IBA		 sex vesicles/chromatin of XY bivalent
GO_REF:0000033		 GO_Central
RGD		 PMID:10855503 GO_REF:0000033, RGD:2300257 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396 		JBrowse link
G Rad51 RAD51 recombinase is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:14668445), (PMID:18283110), (PMID:20551173), (PMID:22164254), (PMID:22530760), (PMID:23555294), (PMID:24891606), (PMID:26490168), (PMID:27760146)		 GO_Central
RGD		 PMID:14668445 PMID:18283110 PMID:20551173 PMID:22164254 PMID:22530760 More... GO_REF:0000033 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 located_in ISO (PMID:15014043) RGD PMID:15014043 NCBI chr 5:144,526,025...144,544,445
Ensembl chr 5:144,526,025...144,544,577 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (PMID:18084284), (PMID:22164254), (PMID:24797475) RGD PMID:18084284 PMID:22164254 PMID:24797475 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rpa1 replication protein A1 located_in ISO (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254) RGD PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog located_in ISO (PMID:19465021) RGD PMID:19465021 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140 		JBrowse link
G Rsph1 radial spoke head component 1 located_in ISO (PMID:9578619) RGD PMID:9578619 NCBI chr20:9,341,910...9,360,640
Ensembl chr20:9,341,913...9,360,640 		JBrowse link
G Shoc1 shortage in chiasmata 1 located_in ISO (PMID:29742103) RGD PMID:29742103 NCBI chr 5:73,864,423...73,956,487
Ensembl chr 5:73,866,334...73,956,444 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:22164254) RGD PMID:22164254 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc2 structural maintenance of chromosomes 2 located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 5:66,806,882...66,853,478
Ensembl chr 5:66,807,011...66,853,242 		JBrowse link
G Smc4 structural maintenance of chromosomes 4 located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 2:153,240,243...153,268,722
Ensembl chr 2:153,240,283...153,271,571 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:22164254), (PMID:24797475) RGD PMID:22164254 PMID:24797475 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sun2 Sad1 and UNC84 domain containing 2 located_in ISO (PMID:17452644) RGD PMID:17452644 NCBI chr 7:111,275,374...111,292,565
Ensembl chr 7:111,275,380...111,292,553 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (PMID:22854038), (PMID:22863743), (PMID:24589552), (PMID:24891606) RGD PMID:22854038 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:18316482), (PMID:21621532), (PMID:22863743), (PMID:24589552), (PMID:24891606) RGD PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Tex11 testis expressed 11 located_in ISO (PMID:18316482) RGD PMID:18316482 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 located_in ISO (PMID:14718568) RGD PMID:14718568 NCBI chr 8:103,887,805...103,931,662
Ensembl chr 8:103,887,865...103,931,674 		JBrowse link
G Ttn titin located_in ISO (PMID:9548712) RGD PMID:9548712 NCBI chr 3:61,652,432...61,924,912
Ensembl chr 3:61,652,439...61,924,741 		JBrowse link
G Tubg1 tubulin, gamma 1 located_in ISO (PMID:15007207) RGD PMID:15007207 NCBI chr10:86,052,845...86,059,436
Ensembl chr10:86,052,743...86,059,433 		JBrowse link
delta DNA polymerase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit part_of IC
ISO
IBA
IEA
IDA		 (PMID:11595739)
(PMID:11595739), (PMID:12403614), (PMID:22465957)
GO_REF:0000114
GO_REF:0000033
GO_REF:0000117		 RGD
ComplexPortal
GO_Central
UniProt		 PMID:11595739 PMID:12403614 PMID:22465957 PMID:7503737 PMID:10541966 GO_REF:0000033 GO_REF:0000114 GO_REF:0000117, RGD:2307013, RGD:729526 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465 		JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit part_of IC
ISO
IBA
IEA
IDA		 (PMID:11595739)
(PMID:11595739), (PMID:12403614), (PMID:22465957)
GO_REF:0000114
GO_REF:0000033
GO_REF:0000117		 RGD
ComplexPortal
GO_Central
UniProt		 PMID:11595739 PMID:12403614 PMID:22465957 PMID:7503737 PMID:10541966 GO_REF:0000033 GO_REF:0000114 GO_REF:0000117, RGD:2307013, RGD:729526 NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160 		JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit part_of IC
ISO
IBA		 (PMID:11595739)
(PMID:11595739), (PMID:12403614), (PMID:22465957)
GO_REF:0000114
GO_REF:0000033		 RGD
ComplexPortal
GO_Central		 PMID:11595739 PMID:12403614 PMID:22465957 PMID:7503737 GO_REF:0000033 GO_REF:0000114, RGD:2307013 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665 		JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit part_of IC
ISO
IBA		 (PMID:12403614)
GO_REF:0000114
GO_REF:0000033		 RGD
ComplexPortal
GO_Central		 PMID:12403614 PMID:7503737 GO_REF:0000033 GO_REF:0000114, RGD:2307013 NCBI chr 1:201,526,591...201,528,406
Ensembl chr 1:201,526,665...201,528,401 		JBrowse link
DNA replication factor A complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcas2 BCAS2, pre-mRNA processing factor located_in ISO (PMID:24332808) RGD PMID:24332808 NCBI chr 2:190,692,503...190,700,386
Ensembl chr 2:190,692,461...190,700,389 		JBrowse link
G Cdc5l cell division cycle 5-like part_of
located_in		 IEA
ISO
ISS		 GO_REF:0000107
(PMID:24332808)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:24332808 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450 		JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease located_in ISO (PMID:7700386) RGD PMID:7700386 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472 		JBrowse link
G Helb DNA helicase B located_in ISO (PMID:26774285) RGD PMID:26774285 NCBI chr 7:55,588,510...55,615,979
Ensembl chr 7:55,588,798...55,615,585 		JBrowse link
G Plrg1 pleiotropic regulator 1 part_of
located_in		 IEA
ISO
ISS		 GO_REF:0000107
(PMID:24332808)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:24332808 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:168,408,139...168,424,470
Ensembl chr 2:168,408,124...168,424,522 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 part_of
located_in		 IEA
ISO
ISS		 GO_REF:0000107
(PMID:24332808)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:24332808 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662 		JBrowse link
G Rpa1 replication protein A1 part_of IDA
ISO
IBA		 (PMID:11927569), (PMID:27723717), (PMID:27723720), (PMID:7760808)
GO_REF:0000033		 RGD
GO_Central		 PMID:7760808 PMID:11927569 PMID:27723717 PMID:27723720 PMID:8463251 More... GO_REF:0000033, RGD:2307012, RGD:2307013 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Rpa2 replication protein A2 part_of IDA
IBA
ISO		 GO_REF:0000033
(PMID:11927569), (PMID:2406247), (PMID:27723717), (PMID:27723720)		 GO_Central
RGD		 PMID:2406247 PMID:11927569 PMID:27723717 PMID:27723720 PMID:8463251 More... GO_REF:0000033, RGD:2307012, RGD:2307013 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350 		JBrowse link
G Rpa3 replication protein A3 part_of IDA
ISO
IBA		 (PMID:11927569), (PMID:7760808)
GO_REF:0000033		 RGD
GO_Central		 PMID:7760808 PMID:11927569 PMID:7503737 GO_REF:0000033, RGD:2307013 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709 		JBrowse link
G Rpa3l1 replication protein A3 like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:45,908,653...45,909,063
Ensembl chr12:45,908,683...45,909,048 		JBrowse link
G Smarcal1 SNF2 related chromatin remodeling annealing helicase 1 located_in ISS
ISO		 GO_REF:0000024
(PMID:19793862), (PMID:19793863)		 UniProt
RGD		 PMID:19793862 PMID:19793863 GO_REF:0000024 NCBI chr 9:74,239,718...74,286,156
Ensembl chr 9:74,240,241...74,286,146 		JBrowse link
G Tonsl tonsoku-like, DNA repair protein located_in ISS
ISO		 GO_REF:0000024
(PMID:21055983)		 UniProt
RGD		 PMID:21055983 GO_REF:0000024 NCBI chr 7:108,345,704...108,360,792
Ensembl chr 7:108,346,047...108,360,750 		JBrowse link
G Xpa XPA, DNA damage recognition and repair factor located_in ISO (PMID:7700386) RGD PMID:7700386 NCBI chr 5:60,431,673...60,475,726
Ensembl chr 5:60,431,673...60,475,726 		JBrowse link
epsilon DNA polymerase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07052692.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 3:67,324,510...67,325,566 JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit part_of ISO
IBA		 (PMID:10801849), (PMID:22465957)
GO_REF:0000033		 RGD
GO_Central		 PMID:10801849 PMID:22465957 GO_REF:0000033 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939 		JBrowse link
G Pole2 DNA polymerase epsilon 2, accessory subunit part_of ISO
IBA		 (PMID:10801849), (PMID:22465957)
GO_REF:0000033		 RGD
GO_Central		 PMID:10801849 PMID:22465957 GO_REF:0000033 NCBI chr 6:87,674,702...87,712,723
Ensembl chr 6:87,674,702...87,699,305 		JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit part_of ISO
IBA
ISS		 (PMID:10801849)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:10801849 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
Ensembl chr 7:75,974,717...75,977,231 		JBrowse link
G Pole3-ps2 DNA polymerase epsilon 3, accessory subunit, pseudogene 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:26,135,927...26,136,417
Ensembl chr17:26,135,927...26,136,235
Ensembl chr17:26,135,927...26,136,235 		JBrowse link
G Pole4 DNA polymerase epsilon 4, accessory subunit part_of ISO
IBA		 (PMID:10801849)
GO_REF:0000033		 RGD
GO_Central		 PMID:10801849 GO_REF:0000033 NCBI chr 4:115,165,285...115,171,097
Ensembl chr 4:115,165,285...115,171,097 		JBrowse link
GINS complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gins1 GINS complex subunit 1 part_of IBA
ISO		 GO_REF:0000033
(PMID:17417653)		 GO_Central
RGD		 PMID:17417653 GO_REF:0000033 NCBI chr 3:139,724,513...139,745,930
Ensembl chr 3:139,724,490...139,745,936 		JBrowse link
G Gins2 GINS complex subunit 2 part_of IBA
ISO		 GO_REF:0000033
(PMID:17417653)		 GO_Central
RGD		 PMID:17417653 GO_REF:0000033 NCBI chr19:48,626,770...48,639,523
Ensembl chr19:48,626,770...48,639,339 		JBrowse link
G Gins3 GINS complex subunit 3 part_of IBA
ISO		 GO_REF:0000033
(PMID:17417653)		 GO_Central
RGD		 PMID:17417653 GO_REF:0000033 NCBI chr19:9,420,085...9,428,621
Ensembl chr19:9,420,086...9,428,687 		JBrowse link
G Gins4 GINS complex subunit 4 part_of IEA
ISO
IBA		 GO_REF:0000107
(PMID:17417653)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:17417653 GO_REF:0000033 GO_REF:0000107 NCBI chr16:68,787,572...68,799,938
Ensembl chr16:68,767,339...68,802,273 		JBrowse link
G Slc5a8 solute carrier family 5 member 8 part_of ISO (PMID:20211600) RGD PMID:20211600 NCBI chr 7:23,272,891...23,313,811
Ensembl chr 7:23,272,427...23,314,642 		JBrowse link
Ino80 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A part_of ISO (PMID:18026119), (PMID:21303910) RGD PMID:18026119 PMID:21303910 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401 		JBrowse link
G Actr5 actin related protein 5 part_of ISO
IBA		 (PMID:18026119), (PMID:21303910)
GO_REF:0000033		 RGD
GO_Central		 PMID:18026119 PMID:21303910 GO_REF:0000033 NCBI chr 3:147,282,461...147,295,870
Ensembl chr 3:147,282,624...147,296,110 		JBrowse link
G Actr8 actin related protein 8 part_of ISO
IBA		 (PMID:18026119), (PMID:21303910)
GO_REF:0000033		 RGD
GO_Central		 PMID:18026119 PMID:21303910 GO_REF:0000033 NCBI chr16:5,164,131...5,186,353
Ensembl chr16:5,164,129...5,178,577 		JBrowse link
G Ino80 INO80 complex ATPase subunit part_of ISO
IBA		 (PMID:18026119), (PMID:21303910)
GO_REF:0000033		 RGD
GO_Central		 PMID:18026119 PMID:21303910 GO_REF:0000033 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911 		JBrowse link
G Ino80b INO80 complex subunit B part_of ISO
IBA		 (PMID:21303910)
GO_REF:0000033		 RGD
GO_Central		 PMID:21303910 GO_REF:0000033 NCBI chr 4:115,627,907...115,631,069
Ensembl chr 4:115,627,908...115,631,456 		JBrowse link
G Ino80c INO80 complex subunit C part_of ISO
IBA
IEA		 (PMID:21303910)
GO_REF:0000033
GO_REF:0000002		 RGD
GO_Central
InterPro		 PMID:21303910 GO_REF:0000002 GO_REF:0000033 NCBI chr18:15,378,764...15,398,574
Ensembl chr18:15,378,770...15,393,403 		JBrowse link
G Ino80d INO80 complex subunit D part_of ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 9:64,447,075...64,514,013
Ensembl chr 9:64,457,165...64,515,242 		JBrowse link
G Ino80e INO80 complex subunit E part_of ISO
IBA
IEA		 (PMID:21303910)
GO_REF:0000033
GO_REF:0000002		 RGD
GO_Central
InterPro		 PMID:21303910 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:181,461,406...181,472,059
Ensembl chr 1:181,461,408...181,472,469 		JBrowse link
G Mcrs1 microspherule protein 1 part_of ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 7:130,383,853...130,392,667
Ensembl chr 7:130,383,853...130,392,685 		JBrowse link
G Nfrkb nuclear factor related to kappa B binding protein part_of
located_in		 ISO (PMID:21303910)
(PMID:18922472)		 RGD PMID:18922472 PMID:21303910 NCBI chr 8:29,831,802...29,863,360
Ensembl chr 8:29,831,812...29,863,359 		JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 part_of ISO
IBA		 (PMID:18026119), (PMID:21303910)
GO_REF:0000033		 RGD
GO_Central		 PMID:18026119 PMID:21303910 GO_REF:0000033 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384 		JBrowse link
G Ruvbl1-ps1 RuvB-like AAA ATPase 1, pseudogene 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:1,640,138...1,641,886
Ensembl chr  X:1,640,300...1,641,811 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 part_of ISO
IBA		 (PMID:18026119), (PMID:21303910)
GO_REF:0000033		 RGD
GO_Central		 PMID:18026119 PMID:21303910 GO_REF:0000033 NCBI chr 1:95,902,014...95,915,247
Ensembl chr 1:95,901,701...95,915,342 		JBrowse link
G Tfpt TCF3 fusion partner part_of IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
(PMID:21303910)		 Ensembl
GO_Central
RGD		 PMID:21303910 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:65,587,633...65,597,407
Ensembl chr 1:65,582,359...65,611,689 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 part_of
located_in		 ISO (PMID:21303910)
(PMID:18922472)		 RGD PMID:18922472 PMID:21303910 NCBI chr13:55,520,722...55,556,503
Ensembl chr13:55,520,729...55,556,502 		JBrowse link
G Yy1 YY1 transcription factor part_of ISO (PMID:18026119), (PMID:21303910) RGD PMID:18026119 PMID:21303910 NCBI chr 6:127,706,739...127,736,499
Ensembl chr 6:127,707,596...127,732,747 		JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:27760146)		 Ensembl
RGD		 PMID:27760146 GO_REF:0000107 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase located_in ISO (PMID:10728666) RGD PMID:10728666 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Brca1 BRCA1, DNA repair associated located_in ISO
IEA		 (PMID:9774970)
GO_REF:0000107		 RGD
Ensembl		 PMID:9774970 GO_REF:0000107 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Brca2 BRCA2, DNA repair associated located_in ISO
IEA		 (PMID:9774970)
GO_REF:0000107		 RGD
Ensembl		 PMID:9774970 GO_REF:0000107 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in ISO (PMID:30718482) RGD PMID:30718482 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:19283064) RGD PMID:19283064 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Kash5 KASH domain containing 5 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:24062341)		 GO_Central
RGD		 PMID:24062341 GO_REF:0000033 NCBI chr 1:95,668,918...95,691,353
Ensembl chr 1:95,668,886...95,691,368 		JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:20551173)		 GO_Central
RGD		 PMID:20551173 GO_REF:0000033 NCBI chr 8:82,765,661...82,939,649
Ensembl chr 8:82,765,661...82,939,649 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO (PMID:21743440) RGD PMID:21743440 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298 		JBrowse link
G Rad51 RAD51 recombinase located_in ISO (PMID:9774970)
(PMID:18694567), (PMID:21743440)		 RGD PMID:9774970 PMID:18694567 PMID:21743440 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (PMID:15870106), (PMID:32328639) RGD PMID:15870106 PMID:32328639 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rpa1 replication protein A1 located_in ISO (PMID:21743440), (PMID:22711701) RGD PMID:21743440 PMID:22711701 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A IDA MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chr  X:21,103,323...21,148,053
Ensembl chr  X:21,103,282...21,148,056 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:15870106), (PMID:22711701) RGD PMID:15870106 PMID:22711701 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in IEA
ISO		 GO_REF:0000107
(PMID:15870106), (PMID:22711701), (PMID:32328639)		 Ensembl
RGD		 PMID:15870106 PMID:22711701 PMID:32328639 GO_REF:0000107 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:22711701) RGD PMID:22711701 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in
is_active_in		 IDA
ISO
IBA
IEA		 PMID:9933407
(PMID:18283110), (PMID:22011390), (PMID:22711701), (PMID:23133398)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 PMID:9933407 GO_REF:0000033 GO_REF:0000107, RGD:11035335 NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789 		JBrowse link
G Sycp2l synaptonemal complex protein 2-like is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:26362258)		 GO_Central
RGD		 PMID:26362258 GO_REF:0000033 NCBI chr17:23,589,217...23,645,273
Ensembl chr17:23,592,899...23,648,306 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in IDA
ISO		 PMID:9933407
(PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 RGD PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 PMID:21743440 More... RGD:11035335 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
nuclear origin of replication recognition complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrwd1 leucine-rich repeats and WD repeat domain containing 1 part_of ISO
IBA		 (PMID:20932478), (PMID:21029866)
GO_REF:0000033		 RGD
GO_Central		 PMID:20932478 PMID:21029866 GO_REF:0000033 NCBI chr12:20,530,035...20,543,078
Ensembl chr12:20,530,012...20,549,536 		JBrowse link
G Mcm2 minichromosome maintenance complex component 2 part_of ISO (PMID:12941272) RGD PMID:12941272 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847 		JBrowse link
G Orc1 origin recognition complex, subunit 1 part_of ISS
ISO
IEA		 GO_REF:0000024
(PMID:16549788), (PMID:20932478), (PMID:21029866)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:16549788 PMID:20932478 PMID:21029866 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:123,324,273...123,348,375
Ensembl chr 5:123,324,315...123,348,375 		JBrowse link
G Orc2 origin recognition complex, subunit 2 part_of IEA
ISO
IBA		 GO_REF:0000104
(PMID:16549788), (PMID:20932478), (PMID:21029866)
(PMID:12941272)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:12941272 PMID:16549788 PMID:20932478 PMID:21029866 GO_REF:0000033 GO_REF:0000104 NCBI chr 9:60,001,631...60,038,301
Ensembl chr 9:60,001,910...60,038,195 		JBrowse link
G Orc3 origin recognition complex, subunit 3 part_of IEA
ISO
IBA
ISS		 GO_REF:0000002
(PMID:16549788), (PMID:20932478), (PMID:21029866)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 InterPro
RGD
GO_Central
Ensembl
UniProt		 PMID:16549788 PMID:20932478 PMID:21029866 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:49,123,758...49,181,552
Ensembl chr 5:49,126,955...49,181,633 		JBrowse link
G Orc4 origin recognition complex, subunit 4 part_of ISS
ISO
IBA
IEA		 GO_REF:0000024
(PMID:16549788), (PMID:20932478)
GO_REF:0000033
GO_REF:0000107		 UniProt
RGD
GO_Central
Ensembl		 PMID:16549788 PMID:20932478 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:33,290,844...33,334,022
Ensembl chr 3:33,294,355...33,333,824 		JBrowse link
G Orc5 origin recognition complex, subunit 5 part_of IBA
ISO		 GO_REF:0000033
(PMID:16549788), (PMID:20932478)		 GO_Central
RGD		 PMID:16549788 PMID:20932478 GO_REF:0000033 NCBI chr 4:12,548,007...12,612,611
Ensembl chr 4:12,548,007...12,612,568 		JBrowse link
G Orc6 origin recognition complex, subunit 6 part_of IBA
ISO		 GO_REF:0000033
(PMID:16549788)		 GO_Central
RGD		 PMID:16549788 GO_REF:0000033 NCBI chr19:21,757,867...21,765,638
Ensembl chr19:21,757,866...21,765,662 		JBrowse link
nuclear replication fork term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1b bromodomain adjacent to zinc finger domain, 1B located_in ISO (PMID:15543136) RGD PMID:15543136 NCBI chr12:21,431,985...21,489,956
Ensembl chr12:21,431,985...21,490,426 		JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 is_active_in ISS
ISO		 GO_REF:0000024
(PMID:33412112)		 UniProt
RGD		 PMID:33412112 GO_REF:0000024 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689 		JBrowse link
G Etaa1 ETAA1 activator of ATR kinase located_in
is_active_in		 ISO
IBA		 (PMID:27723717), (PMID:27723720)
GO_REF:0000033		 RGD
GO_Central		 PMID:27723717 PMID:27723720 GO_REF:0000033 NCBI chr14:92,298,461...92,314,044
Ensembl chr14:92,299,553...92,314,104 		JBrowse link
G Mcm10 minichromosome maintenance 10 replication initiation factor is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:73,263,788...73,288,346
Ensembl chr17:73,266,095...73,287,364 		JBrowse link
G Mms22l MMS22-like, DNA repair protein located_in
is_active_in		 ISO
IBA		 (PMID:21055983), (PMID:21055984)
GO_REF:0000033
(PMID:27797818)		 RGD
GO_Central		 PMID:21055983 PMID:21055984 PMID:27797818 GO_REF:0000033 NCBI chr 5:38,197,707...38,313,745
Ensembl chr 5:38,197,779...38,313,745 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 is_active_in ISO
ISS		 (PMID:33412112)
GO_REF:0000024		 RGD
UniProt		 PMID:33412112 GO_REF:0000024 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Pcna proliferating cell nuclear antigen located_in ISO (PMID:15543136), (PMID:21383955) RGD PMID:15543136 PMID:21383955 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995 		JBrowse link
G Smarca5 SNF2 related chromatin remodeling ATPase 5 located_in ISO (PMID:15543136) RGD PMID:15543136 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594 		JBrowse link
G Smarcad1 SNF2 related chromatin remodeling ATPase with DExD box 1 located_in ISO (PMID:21549307) RGD PMID:21549307 NCBI chr 4:94,311,441...94,379,184
Ensembl chr 4:94,311,489...94,372,563 		JBrowse link
G Smarcal1 SNF2 related chromatin remodeling annealing helicase 1 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:74,239,718...74,286,156
Ensembl chr 9:74,240,241...74,286,146 		JBrowse link
G Tonsl tonsoku-like, DNA repair protein located_in
is_active_in		 ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:26527279), (PMID:29478807)
(PMID:21055983), (PMID:21055984)		 UniProt
GO_Central
RGD		 PMID:21055983 PMID:21055984 PMID:26527279 PMID:29478807 GO_REF:0000024 GO_REF:0000033 NCBI chr 7:108,345,704...108,360,792
Ensembl chr 7:108,346,047...108,360,750 		JBrowse link
G Trex1 three prime repair exonuclease 1 located_in ISO (PMID:18045533) RGD PMID:18045533 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796 		JBrowse link
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:20,478,310...20,523,106
Ensembl chr15:20,489,291...20,523,096 		JBrowse link
G Zmiz2 zinc finger, MIZ-type containing 2 located_in ISO (PMID:16051670) RGD PMID:16051670 NCBI chr14:81,251,391...81,267,936
Ensembl chr14:81,251,417...81,267,936 		JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 located_in
is_active_in		 ISO
IBA		 (PMID:22704558), (PMID:22705370), (PMID:22759634)
GO_REF:0000033		 RGD
GO_Central		 PMID:22704558 PMID:22705370 PMID:22759634 GO_REF:0000033 NCBI chr13:39,440,653...39,595,782
Ensembl chr13:39,440,889...39,595,670 		JBrowse link
nucleolus organizer region term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt7 sirtuin 7 located_in ISO (PMID:19174463) RGD PMID:19174463 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172 		JBrowse link
perichromatin fibrils term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clock clock circadian regulator IDA RGD PMID:16208722 RGD:10401943 NCBI chr14:31,908,542...31,992,673
Ensembl chr14:31,908,566...31,990,400 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 located_in ISO (PMID:17267687) RGD PMID:17267687 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122 		JBrowse link
G Dhx9 DExH-box helicase 9 located_in ISO (PMID:10198287) RGD PMID:10198287 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Nufip1 nuclear FMR1 interacting protein 1 located_in ISO (PMID:12941608) RGD PMID:12941608 NCBI chr15:51,429,518...51,460,308
Ensembl chr15:51,429,549...51,460,310 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 located_in ISO (PMID:10318760) RGD PMID:10318760 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 IDA MMO:0000663 RGD PMID:19321046 RGD:150429709 NCBI chr10:102,052,158...102,055,365
Ensembl chr10:102,052,314...102,055,338 		JBrowse link
G Tardbp TAR DNA binding protein IDA RGD PMID:19539030 RGD:5687141 NCBI chr 5:159,050,518...159,062,218
Ensembl chr 5:159,051,799...159,062,055 		JBrowse link
G Trim24 tripartite motif-containing 24 located_in ISO (PMID:10318760) RGD PMID:10318760 NCBI chr 4:66,567,342...66,692,029
Ensembl chr 4:66,566,686...66,717,241 		JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msh4 mutS homolog 4 located_in ISO (PMID:27760146) RGD PMID:27760146 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
replication fork protection complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC120094818 TIMELESS-interacting protein-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:113,693,252...113,694,434
Ensembl chr 9:113,543,173...113,605,998 		JBrowse link
G Timeless timeless circadian regulator part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:654,804...678,769
Ensembl chr 7:654,822...678,738 		JBrowse link
G Tipin timeless interacting protein part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:64,780,813...64,801,358
Ensembl chr 8:64,780,828...64,801,352
Ensembl chr 9:64,780,828...64,801,352 		JBrowse link
Rpd3L-Expanded complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kmt2e lysine methyltransferase 2E part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:11,658,218...11,727,373
Ensembl chr 4:11,658,979...11,727,373 		JBrowse link
G Setd5 SET domain containing 5 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:146,217,172...146,294,896
Ensembl chr 4:146,217,180...146,294,894 		JBrowse link
Set3 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kmt2e lysine methyltransferase 2E part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:11,658,218...11,727,373
Ensembl chr 4:11,658,979...11,727,373 		JBrowse link
G Setd5 SET domain containing 5 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:146,217,172...146,294,896
Ensembl chr 4:146,217,180...146,294,894 		JBrowse link
Sin3-type complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brms1 BRMS1, transcriptional repressor and anoikis regulator part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:202,345,766...202,355,028
Ensembl chr 1:202,345,704...202,355,028 		JBrowse link
G Brms1l BRMS1 like transcriptional repressor part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:73,266,673...73,300,630
Ensembl chr 6:73,266,691...73,300,631 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 part_of ISO (PMID:17827154) RGD PMID:17827154 NCBI chr 3:140,709,984...140,756,757
Ensembl chr 3:140,709,991...140,756,696 		JBrowse link
G Hdac1 histone deacetylase 1 part_of ISO (PMID:17827154) RGD PMID:17827154 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hdac2 histone deacetylase 2 part_of ISO (PMID:14966270), (PMID:17827154) RGD PMID:14966270 PMID:17827154 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Ing2 inhibitor of growth family, member 2 part_of ISO (PMID:16387653) RGD PMID:16387653 NCBI chr16:44,573,592...44,584,180
Ensembl chr16:44,575,597...44,583,482 		JBrowse link
G Morf4l1 mortality factor 4 like 1 part_of ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:14966270)		 UniProt
Ensembl
RGD		 PMID:14966270 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:90,642,988...90,664,518
Ensembl chr 8:90,642,988...90,664,519 		JBrowse link
G Phf12 PHD finger protein 12 part_of ISO
IBA		 (PMID:22048773)
GO_REF:0000033		 RGD
GO_Central		 PMID:22048773 GO_REF:0000033 NCBI chr10:62,871,309...62,919,026
Ensembl chr10:62,872,195...62,919,000 		JBrowse link
G Sap130 Sin3A associated protein 130 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:23,244,337...23,345,368
Ensembl chr18:23,267,256...23,345,359 		JBrowse link
G Sin3a SIN3 transcription regulator family member A part_of ISO
IBA		 (PMID:14966270), (PMID:17827154)
GO_REF:0000033		 RGD
GO_Central		 PMID:14966270 PMID:17827154 GO_REF:0000033 NCBI chr 8:57,481,539...57,536,195
Ensembl chr 8:57,481,573...57,536,192 		JBrowse link
G Sinhcaf SIN3-HDAC complex associated factor part_of ISO
IBA		 (PMID:22984288)
GO_REF:0000033		 RGD
GO_Central		 PMID:22984288 GO_REF:0000033 NCBI chr 4:181,888,301...181,913,294
Ensembl chr 4:181,888,312...181,910,276 		JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component part_of IBA
ISO		 GO_REF:0000033
(PMID:11909966)		 GO_Central
RGD		 PMID:11909966 GO_REF:0000033 NCBI chr12:39,477,181...39,499,633
Ensembl chr12:39,477,568...39,499,628 		JBrowse link
Slx1-Slx4 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slx1b SLX1 homolog B, structure-specific endonuclease subunit part_of ISO
IBA
IEA		 (PMID:19595721), (PMID:19596235), (PMID:19596236)
GO_REF:0000033
GO_REF:0000104		 RGD
GO_Central
UniProt		 PMID:19595721 PMID:19596235 PMID:19596236 GO_REF:0000033 GO_REF:0000104 NCBI chr 1:181,286,190...181,291,739
Ensembl chr 1:181,283,921...181,291,775 		JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit part_of ISO
IBA		 (PMID:19595721), (PMID:19596235), (PMID:19596236)
GO_REF:0000033		 RGD
GO_Central		 PMID:19595721 PMID:19596235 PMID:19596236 GO_REF:0000033 NCBI chr10:11,526,623...11,549,313
Ensembl chr10:11,528,424...11,549,295 		JBrowse link
Swi5-Sfr1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfr1 SWI5-dependent homologous recombination repair protein 1 part_of ISO
IBA
IEA
ISS		 (PMID:21252223)
(PMID:20976249)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:20976249 PMID:21252223 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:246,619,235...246,623,250
Ensembl chr 1:246,597,044...246,623,250 		JBrowse link
G Swi5 SWI5 homologous recombination repair protein part_of ISO
IBA
ISS		 (PMID:21252223)
(PMID:20976249)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:20976249 PMID:21252223 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:15,574,687...15,583,760
Ensembl chr 3:15,564,715...15,583,805 		JBrowse link
Swi5-Swi2 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Swi5 SWI5 homologous recombination repair protein part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:15,574,687...15,583,760
Ensembl chr 3:15,564,715...15,583,805 		JBrowse link
Swr1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr6 actin related protein 6 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:24,150,250...24,171,057
Ensembl chr 7:24,150,250...24,171,067 		JBrowse link
G Anp32e acidic nuclear phosphoprotein 32 family member E part_of ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:24463511)		 UniProt
Ensembl
RGD		 PMID:24463511 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:183,472,600...183,489,057
Ensembl chr 2:183,472,609...183,489,054 		JBrowse link
G Brd8 bromodomain containing 8 part_of ISO (PMID:24463511) RGD PMID:24463511 NCBI chr18:26,204,892...26,229,999
Ensembl chr18:26,181,732...26,229,884 		JBrowse link
G Cfdp1 craniofacial development protein 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:39,718,313...39,823,824
Ensembl chr19:39,718,347...39,823,824 		JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:131,143,726...131,151,760
Ensembl chr 5:131,143,729...131,151,742 		JBrowse link
G Ep400 E1A binding protein p400 part_of ISO
IBA		 (PMID:24463511)
GO_REF:0000033		 RGD
GO_Central		 PMID:24463511 GO_REF:0000033 NCBI chr12:45,891,886...46,002,523
Ensembl chr12:45,891,916...45,998,861 		JBrowse link
G Ing3 inhibitor of growth family, member 3 part_of ISS
ISO		 GO_REF:0000024
(PMID:24463511)		 UniProt
RGD		 PMID:24463511 GO_REF:0000024 NCBI chr 4:50,477,954...50,505,168
Ensembl chr 4:50,477,962...50,503,715 		JBrowse link
G Kat5 lysine acetyltransferase 5 part_of ISO
IEA
ISS		 (PMID:24463511)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:24463511 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458 		JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 part_of ISO
IBA
ISS		 (PMID:24463511)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:24463511 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384 		JBrowse link
G Ruvbl1-ps1 RuvB-like AAA ATPase 1, pseudogene 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:1,640,138...1,641,886
Ensembl chr  X:1,640,300...1,641,811 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 part_of ISO
IBA		 (PMID:24463511)
GO_REF:0000033		 RGD
GO_Central		 PMID:24463511 GO_REF:0000033 NCBI chr 1:95,902,014...95,915,247
Ensembl chr 1:95,901,701...95,915,342 		JBrowse link
G Srcap Snf2-related CREBBP activator protein part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:182,123,562...182,172,643
Ensembl chr 1:182,118,416...182,176,610 		JBrowse link
G Trrap transformation/transcription domain-associated protein part_of ISO (PMID:24463511) RGD PMID:24463511 NCBI chr12:9,738,006...9,827,708
Ensembl chr12:9,738,006...9,827,674 		JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in ISO (PMID:24390283) RGD PMID:24390283 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475 		JBrowse link
G Fam9c family with sequence similarity 9, member C is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:146,236,386...146,256,079
Ensembl chr  X:146,236,934...146,256,051 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:12764197)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:12764197 GO_REF:0000024 GO_REF:0000107 NCBI chr12:21,318,251...21,390,350
Ensembl chr12:21,319,568...21,390,350 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (PMID:22854038) RGD PMID:22854038 NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383 		JBrowse link
G Hormad2 HORMA domain containing 2 located_in ISO (PMID:22854038) RGD PMID:22854038 NCBI chr14:79,215,013...79,300,447
Ensembl chr14:79,214,998...79,299,910 		JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 located_in ISO (PMID:8622925) RGD PMID:8622925 NCBI chr 6:95,128,504...95,131,281
Ensembl chr 6:95,128,350...95,131,287 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:12584241) RGD PMID:12584241 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) RGD PMID:9001252 NCBI chr10:67,717,808...67,741,141
Ensembl chr10:67,717,812...67,798,414 		JBrowse link
G LOC100911047 X-linked lymphocyte-regulated protein 3A-like is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,935,437...150,947,126
Ensembl chr  X:150,935,511...150,946,614 		JBrowse link
G LOC134484028 X-linked lymphocyte-regulated protein 3A-like is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Mlh1 mutL homolog 1 located_in IEA
ISO
IDA		 GO_REF:0000107
(PMID:15467367), (PMID:16260499)
PMID:16968740		 Ensembl
RGD		 PMID:15467367 PMID:16260499 PMID:16968740 GO_REF:0000107, RGD:8554354 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (PMID:15467367), (PMID:16260499) RGD PMID:15467367 PMID:16260499 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO (PMID:10809667), (PMID:16260499) RGD PMID:10809667 PMID:16260499 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
G Msh5 mutS homolog 5 located_in ISO (PMID:16260499) RGD PMID:16260499 NCBI chr20:3,773,867...3,793,337
Ensembl chr20:3,776,942...3,793,336 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 IDA RGD PMID:1363622 RGD:633987 NCBI chr10:85,338,158...85,345,108
Ensembl chr10:85,338,161...85,345,093 		JBrowse link
G Plk1 polo-like kinase 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:22854038)		 Ensembl
RGD		 PMID:22854038 GO_REF:0000107 NCBI chr 1:176,716,420...176,726,400
Ensembl chr 1:176,716,420...176,726,400 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (PMID:12759374) RGD PMID:12759374 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rnf212 ring finger protein 212 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:23396135), (PMID:24390283)		 GO_Central
RGD		 PMID:23396135 PMID:24390283 GO_REF:0000033 NCBI chr14:949,397...988,377
Ensembl chr14:949,448...987,831 		JBrowse link
G Rnf212b ring finger protein 212B located_in IEA
ISO		 GO_REF:0000107
(PMID:38865271)		 Ensembl
RGD		 PMID:38865271 GO_REF:0000107 NCBI chr15:28,274,629...28,321,093
Ensembl chr15:28,244,083...28,321,347 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A IDA MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr  X:21,103,323...21,148,053
Ensembl chr  X:21,103,282...21,148,056 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:11564881), (PMID:16968740) RGD PMID:11564881 PMID:16968740 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 IDA MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in TAS
ISO		 (PMID:10698974) RGD PMID:10698974 PMID:11599053 RGD:727325 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in
is_active_in		 IDA
IBA		 PMID:16968740
GO_REF:0000033		 GO_Central PMID:16968740 GO_REF:0000033, RGD:8554354 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce1l synaptonemal complex central element protein 1-like is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:41,625,074...41,635,541
Ensembl chr19:41,617,180...41,635,526 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in IDA
ISO
IEA		 (PMID:12815066), (PMID:15937223), (PMID:16968740), (PMID:17696610), (PMID:18070917), (PMID:18316482), (PMID:20551173), (PMID:22011390), (PMID:25675407), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482)
GO_REF:0000002		 RGD
InterPro		 PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 PMID:18070917 More... GO_REF:0000002, RGD:9686370, RGD:8554354 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in IDA
ISO		 (PMID:18316482), (PMID:26362258) RGD PMID:18316482 PMID:26362258 PMID:9592139 RGD:69387 NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in
is_active_in		 ISO
IBA		 (PMID:9774970)
(PMID:12815066), (PMID:14736746), (PMID:15657431), (PMID:16428451), (PMID:16968740), (PMID:17141210), (PMID:17696610), (PMID:17912366), (PMID:18070917), (PMID:20551173), (PMID:22854038), (PMID:23810942), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482), (PMID:31839538)
GO_REF:0000033		 RGD
GO_Central		 PMID:9774970 PMID:12815066 PMID:14736746 PMID:15657431 PMID:16428451 More... GO_REF:0000033 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Sycp3l1 synaptonemal complex protein 3 like 1 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:186,108,544...186,111,598
Ensembl chr 1:186,108,920...186,109,630 		JBrowse link
G Syn1 synapsin I located_in ISO (PMID:14736746) RGD PMID:14736746 NCBI chr  X:1,172,208...1,227,400
Ensembl chr  X:1,172,208...1,227,396 		JBrowse link
G Tex11 testis expressed 11 located_in ISO (PMID:18369460) RGD PMID:18369460 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Tex12 testis expressed 12 located_in ISO (PMID:16968740) RGD PMID:16968740 NCBI chr 8:50,908,161...50,913,202
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
G Xlr3a X-linked lymphocyte-regulated 3A is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,967,914...150,978,992
Ensembl chr  X:150,967,919...150,978,992 		JBrowse link
G Xlr4a X-linked lymphocyte-regulated 4A is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,916,647...150,925,201
Ensembl chr  X:150,916,932...150,929,786 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:15870106) RGD PMID:15870106 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in
is_active_in		 IDA
ISO
IBA
IEA		 (PMID:15870106), (PMID:18283110), (PMID:21539824), (PMID:22711701)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701 PMID:1464329 GO_REF:0000033 GO_REF:0000107, RGD:729937 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:15870106) RGD PMID:15870106 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20832
    cellular anatomical structure 20632
      membrane-enclosed lumen 4566
        organelle lumen 4566
          intracellular organelle lumen 4565
            nuclear lumen 4056
              nuclear chromosome 226
                Barr body 6
                CMG complex 11
                COMA complex 0
                GINS complex 5
                Ino80 complex 16
                RITS complex 0
                Rpd3L-Expanded complex 2
                Set3 complex 2
                Sin3-type complex + 12
                Slx1-Slx4 complex 2
                Smp focus 0
                Swi5-Sfr1 complex 2
                Swi5-Swi2 complex 1
                Swr1 complex 14
                condensed nuclear chromosome + 86
                epsilon DNA polymerase complex 6
                nuclear origin of replication recognition complex 8
                nuclear replication fork + 37
                nucleolar chromatin + 1
                perichromatin fibrils 8
Path 2
Term Annotations click to browse term
  cellular_component 20832
    cellular anatomical structure 20632
      intracellular anatomical structure 15188
        intracellular organelle 13568
          intracellular membrane-bounded organelle 12009
            nucleus 7454
              nuclear lumen 4056
                nuclear chromosome 226
                  Barr body 6
                  CMG complex 11
                  COMA complex 0
                  GINS complex 5
                  Ino80 complex 16
                  RITS complex 0
                  Rpd3L-Expanded complex 2
                  Set3 complex 2
                  Sin3-type complex + 12
                  Slx1-Slx4 complex 2
                  Smp focus 0
                  Swi5-Sfr1 complex 2
                  Swi5-Swi2 complex 1
                  Swr1 complex 14
                  condensed nuclear chromosome + 86
                  epsilon DNA polymerase complex 6
                  nuclear origin of replication recognition complex 8
                  nuclear replication fork + 37
                  nucleolar chromatin + 1
                  perichromatin fibrils 8
paths to the root