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ONTOLOGY REPORT - ANNOTATIONS

Term:cytoplasmic ubiquitin ligase complex
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Accession:GO:0000153 term browser browse the term
Definition:A ubiquitin ligase complex found in the cytoplasm.


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Hrd1p ubiquitin ligase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam8a1 family with sequence similarity 8, member A1 part_of ISO (PMID:28827405) RGD PMID:28827405 NCBI chr17:18,026,601...18,035,509
Ensembl chr17:18,026,601...18,035,470 		JBrowse link
Hrd1p ubiquitin ligase ERAD-L complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase part_of ISO
ISS		 (PMID:26471130)
GO_REF:0000024		 RGD
UniProt		 PMID:26471130 GO_REF:0000024 NCBI chr 6:110,735,450...110,779,695
Ensembl chr 6:110,735,450...110,779,648 		JBrowse link
G Syvn1 synoviolin 1 part_of ISO (PMID:26471130), (PMID:28827405) RGD PMID:26471130 PMID:28827405 NCBI chr 1:203,339,235...203,346,137
Ensembl chr 1:203,339,619...203,346,152 		JBrowse link
VCB complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002622.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:76,426,358...76,427,521 JBrowse link
G AC119015.3 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr10:73,743,526...73,743,822 JBrowse link
G Cul2 cullin 2 IDA RGD PMID:10213691 RGD:2301042 NCBI chr17:54,169,093...54,210,197
Ensembl chr17:54,169,086...54,209,968 		JBrowse link
G Elob elongin B part_of IDA
IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central
RGD		 PMID:10213691 GO_REF:0000002 GO_REF:0000033, RGD:2301042 NCBI chr10:12,848,830...12,853,897
Ensembl chr10:12,848,827...12,853,635 		JBrowse link
G Elob-ps13 elongin B, pseduogene 13 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:21,021,825...21,022,305
Ensembl chr 3:21,021,861...21,022,169
Ensembl chr 3:21,021,861...21,022,169 		JBrowse link
G Elob-ps4 elongin B, pseduogene 4 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:73,749,869...73,750,223
Ensembl chr10:73,747,952...73,750,403 		JBrowse link
G Elobl7 elongin B like 7 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:110,995,164...110,995,624
Ensembl chr 8:110,989,940...110,995,640 		JBrowse link
G Elobl9 elongin B like 9 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:73,765,641...73,765,970
Ensembl chr10:73,765,617...73,765,970 		JBrowse link
G Eloc elongin C IDA RGD PMID:10213691 RGD:2301042 NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890
Ensembl chr20:2,661,724...2,677,890 		JBrowse link
G ENSRNOG00000063973 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr  X:115,936,708...115,937,864 JBrowse link
G ENSRNOG00000064158 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:21,002,979...21,003,786 JBrowse link
G ENSRNOG00000065620 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:21,006,946...21,007,741 JBrowse link
G ENSRNOG00000066103 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:21,025,824...21,026,620 JBrowse link
G ENSRNOG00000066836 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 8:3,228,866...3,234,903 JBrowse link
G ENSRNOG00000068416 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:21,017,907...21,018,712 JBrowse link
G ENSRNOG00000068577 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:20,998,987...20,999,319 JBrowse link
G ENSRNOG00000069411 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:21,029,748...21,030,080 JBrowse link
G ENSRNOG00000069831 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:20,991,066...20,991,398 JBrowse link
G ENSRNOG00000070656 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 6:76,070,756...76,077,309 JBrowse link
G ENSRNOG00000071067 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 4:126,816,739...126,817,049 JBrowse link
G Neurl2 neuralized E3 ubiquitin protein ligase 2 part_of ISO (PMID:14960280) RGD PMID:14960280 NCBI chr 3:153,566,659...153,569,380
Ensembl chr 3:153,566,660...153,569,380 		JBrowse link
G Rbx1 ring-box 1 IDA RGD PMID:10213691 RGD:2301042 NCBI chr 7:112,976,863...113,001,051
Ensembl chr 7:112,990,835...113,001,051 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor part_of IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:9122164 PMID:10213691 GO_REF:0000033, RGD:1559276, RGD:2301042 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20833
    cellular anatomical structure 20633
      cytoplasm 11893
        cytoplasmic ubiquitin ligase complex 26
          ER ubiquitin ligase complex + 3
          VCB complex 23
          cytoplasmic SCF ubiquitin ligase complex 0
Path 2
Term Annotations click to browse term
  cellular_component 20833
    protein-containing complex 6558
      catalytic complex 1863
        transferase complex 933
          ubiquitin ligase complex 372
            cytoplasmic ubiquitin ligase complex 26
              ER ubiquitin ligase complex + 3
              VCB complex 23
              cytoplasmic SCF ubiquitin ligase complex 0
paths to the root