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ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear ubiquitin ligase complex
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Accession:GO:0000152 term browser browse the term
Definition:A ubiquitin ligase complex found in the nucleus.



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nuclear ubiquitin ligase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Babam2 BRISC and BRCA1 A complex member 2 part_of ISO
IEA
ISS
(PMID:14636569)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:14636569 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:24,369,021...24,788,416
Ensembl chr 6:24,369,022...24,833,951
JBrowse link
G Bard1 BRCA1 associated RING domain 1 part_of ISO (PMID:14636569) RGD PMID:14636569 NCBI chr 9:72,616,070...72,694,553
Ensembl chr 9:72,623,155...72,694,265
JBrowse link
G Brca1 BRCA1, DNA repair associated part_of ISO (PMID:14636569) RGD PMID:14636569 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G Brca2 BRCA2, DNA repair associated part_of IEA
ISO
GO_REF:0000107
(PMID:14636569)
Ensembl
RGD
PMID:14636569 GO_REF:0000107 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 part_of ISO (PMID:14636569) RGD PMID:14636569 NCBI chr 9:1,986,942...1,989,484
Ensembl chr 9:1,986,575...1,991,080
JBrowse link
G Rad51 RAD51 recombinase part_of ISO (PMID:14636569) RGD PMID:14636569 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
anaphase-promoting complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anapc1 anaphase promoting complex subunit 1 part_of IBA
ISO
GO_REF:0000033
(PMID:16364912), (PMID:27120157)
GO_Central
RGD
PMID:16364912 PMID:27120157 GO_REF:0000033 NCBI chr 3:115,850,117...115,930,259
Ensembl chr 3:115,850,185...115,930,273
JBrowse link
G Anapc10 anaphase promoting complex subunit 10 part_of IBA
ISO
GO_REF:0000033
(PMID:10318877), (PMID:16364912), (PMID:21926987), (PMID:27120157)
GO_Central
RGD
PMID:10318877 PMID:16364912 PMID:21926987 PMID:27120157 GO_REF:0000033 NCBI chr19:28,152,299...28,205,552
Ensembl chr19:28,152,299...28,205,467
JBrowse link
G Anapc11 anaphase promoting complex subunit 11 part_of IBA
ISO
GO_REF:0000033
(PMID:11739784), (PMID:16364912), (PMID:21926987), (PMID:27120157)
GO_Central
RGD
PMID:11739784 PMID:16364912 PMID:21926987 PMID:27120157 GO_REF:0000033 NCBI chr10:105,875,209...105,886,307 JBrowse link
G Anapc13 anaphase promoting complex subunit 13 part_of IBA
ISO
GO_REF:0000033
(PMID:16364912), (PMID:27120157)
GO_Central
RGD
PMID:16364912 PMID:27120157 GO_REF:0000033 NCBI chr 8:103,205,520...103,213,936
Ensembl chr 8:103,205,520...103,213,936
JBrowse link
G Anapc15 anaphase promoting complex subunit 15 part_of ISS
IEA
ISO
IBA
GO_REF:0000024
GO_REF:0000107
(PMID:21926987), (PMID:27120157)
GO_REF:0000033
GO_REF:0000002
UniProt
Ensembl
RGD
GO_Central
InterPro
PMID:21926987 PMID:27120157 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:156,238,640...156,266,005
Ensembl chr 1:156,262,841...156,268,145
JBrowse link
G Anapc16 anaphase promoting complex subunit 16 part_of IBA
ISO
GO_REF:0000033
(PMID:20360068), (PMID:27120157)
GO_Central
RGD
PMID:20360068 PMID:27120157 GO_REF:0000033 NCBI chr20:27,927,334...27,941,644
Ensembl chr20:27,927,334...27,941,984
JBrowse link
G Anapc2 anaphase promoting complex subunit 2 part_of IBA
ISO
GO_REF:0000033
(PMID:16364912), (PMID:27120157)
GO_Central
RGD
PMID:16364912 PMID:27120157 GO_REF:0000033 NCBI chr 3:8,086,434...8,098,182
Ensembl chr 3:8,086,462...8,098,178
JBrowse link
G Anapc4 anaphase promoting complex subunit 4 part_of IBA
ISO
GO_REF:0000033
(PMID:16364912), (PMID:21926987), (PMID:27120157)
GO_Central
RGD
PMID:16364912 PMID:21926987 PMID:27120157 GO_REF:0000033 NCBI chr14:58,125,995...58,159,253
Ensembl chr14:58,125,995...58,157,770
JBrowse link
G Anapc5 anaphase-promoting complex subunit 5 part_of IEA
ISO
IBA
ISS
GO_REF:0000107
(PMID:16364912), (PMID:27120157)
GO_REF:0000033
GO_REF:0000002
GO_REF:0000024
Ensembl
RGD
GO_Central
InterPro
UniProt
PMID:16364912 PMID:27120157 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr12:33,748,709...33,781,709
Ensembl chr12:33,748,735...33,781,781
JBrowse link
G Anapc7 anaphase promoting complex subunit 7 part_of IBA
ISO
GO_REF:0000033
(PMID:16364912), (PMID:21926987), (PMID:27120157), (PMID:34942119)
GO_Central
RGD
PMID:16364912 PMID:21926987 PMID:27120157 PMID:34942119 GO_REF:0000033 NCBI chr12:34,131,214...34,160,819
Ensembl chr12:34,133,429...34,160,005
JBrowse link
G Cdc16 cell division cycle 16 part_of IBA
ISO
GO_REF:0000033
(PMID:16364912), (PMID:21926987), (PMID:27120157)
GO_Central
RGD
PMID:16364912 PMID:21926987 PMID:27120157 GO_REF:0000033 NCBI chr16:75,773,026...75,796,586
Ensembl chr16:75,773,028...75,796,550
JBrowse link
G Cdc20 cell division cycle 20 part_of
located_in
ISO
IBA
ISS
IEA
(PMID:14743218)
GO_REF:0000033
(PMID:11459825)
GO_REF:0000024
GO_REF:0000107
RGD
GO_Central
UniProt
Ensembl
PMID:11459825 PMID:14743218 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:131,966,203...131,970,406
Ensembl chr 5:131,966,215...131,970,512
JBrowse link
G Cdc23 cell division cycle 23 part_of IBA
ISO
GO_REF:0000033
(PMID:14657031), (PMID:16364912), (PMID:21926987), (PMID:27120157)
GO_Central
RGD
PMID:14657031 PMID:16364912 PMID:21926987 PMID:27120157 GO_REF:0000033 NCBI chr18:26,236,891...26,260,611
Ensembl chr18:26,236,890...26,291,163
JBrowse link
G Cdc26 cell division cycle 26 part_of ISS
ISO
IBA
GO_REF:0000024
(PMID:10922056), (PMID:16364912), (PMID:27120157)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:10922056 PMID:16364912 PMID:27120157 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:75,844,852...75,859,830 JBrowse link
G Cdc27 cell division cycle 27 part_of ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:16364912), (PMID:21926987), (PMID:27120157)
GO_REF:0000033
GO_REF:0000107
UniProt
RGD
GO_Central
Ensembl
PMID:16364912 PMID:21926987 PMID:27120157 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:89,400,720...89,449,816
Ensembl chr10:89,400,940...89,449,736
JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:8,332,029...8,343,953
Ensembl chr 7:8,332,029...8,343,952
JBrowse link
G LOC103692897 anaphase-promoting complex subunit CDC26 pseudogene part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:73,462,396...73,462,806
Ensembl chr 7:73,462,368...73,462,806
Ensembl chr 7:73,462,368...73,462,806
JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 located_in ISS
ISO
GO_REF:0000024
(PMID:11459825)
UniProt
RGD
PMID:11459825 GO_REF:0000024 NCBI chr 5:158,563,545...158,576,698
Ensembl chr 5:158,563,567...158,576,693
JBrowse link
G Ube2c ubiquitin-conjugating enzyme E2C part_of ISO (PMID:16413484), (PMID:18485873), (PMID:19822757) RGD PMID:16413484 PMID:18485873 PMID:19822757 NCBI chr 3:153,506,636...153,509,036
Ensembl chr 3:153,506,636...153,513,339
JBrowse link
G Ube2s ubiquitin-conjugating enzyme E2S part_of ISO
ISS
(PMID:19822757)
GO_REF:0000024
RGD
UniProt
PMID:19822757 GO_REF:0000024 NCBI chr 1:69,028,853...69,032,914
Ensembl chr 1:69,028,750...69,032,914
JBrowse link
BCOR complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcor BCL6 co-repressor part_of ISO (PMID:16943429) RGD PMID:16943429 NCBI chr  X:10,609,756...10,729,613
Ensembl chr  X:10,687,732...10,729,613
JBrowse link
BRCA1-BARD1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bard1 BRCA1 associated RING domain 1 part_of ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:11573085), (PMID:12890688), (PMID:15265711), (PMID:19117993), (PMID:20351172)
GO_REF:0000033
GO_REF:0000107
UniProt
RGD
GO_Central
Ensembl
PMID:11573085 PMID:12890688 PMID:15265711 PMID:19117993 PMID:20351172 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:72,616,070...72,694,553
Ensembl chr 9:72,623,155...72,694,265
JBrowse link
G Brca1 BRCA1, DNA repair associated part_of ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000104
GO_REF:0000033
(PMID:11573085), (PMID:12890688), (PMID:15265711), (PMID:19117993), (PMID:20351172)
UniProt
GO_Central
RGD
PMID:11573085 PMID:12890688 PMID:15265711 PMID:19117993 PMID:20351172 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
PRC1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmi1 BMI1 proto-oncogene, polycomb ring finger part_of ISO
IBA
(PMID:12167701), (PMID:19636380)
GO_REF:0000033
(PMID:16359901)
RGD
GO_Central
PMID:12167701 PMID:16359901 PMID:19636380 GO_REF:0000033 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690
JBrowse link
G Cbx2 chromobox 2 part_of ISO
IBA
(PMID:12167701), (PMID:19636380)
GO_REF:0000033
RGD
GO_Central
PMID:12167701 PMID:19636380 GO_REF:0000033 NCBI chr10:104,278,517...104,287,384
Ensembl chr10:104,278,549...104,287,383
JBrowse link
G Cbx4 chromobox 4 part_of ISO
IBA
(PMID:12167701), (PMID:19636380)
GO_REF:0000033
RGD
GO_Central
PMID:12167701 PMID:19636380 GO_REF:0000033 NCBI chr10:104,337,140...104,343,210
Ensembl chr10:104,336,876...104,356,706
JBrowse link
G Cbx6 chromobox 6 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:111,372,979...111,383,026
Ensembl chr 7:111,372,980...111,383,091
JBrowse link
G Cbx7 chromobox 7 part_of ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000002
(PMID:19636380)
UniProt
InterPro
RGD
PMID:19636380 GO_REF:0000002 GO_REF:0000024 NCBI chr 7:111,460,656...111,479,231
Ensembl chr 7:111,460,656...111,477,973
JBrowse link
G Cbx8 chromobox 8 part_of ISO
IBA
(PMID:12167701), (PMID:19636380)
(PMID:16359901)
GO_REF:0000033
RGD
GO_Central
PMID:12167701 PMID:16359901 PMID:19636380 GO_REF:0000033 NCBI chr10:104,294,518...104,296,956
Ensembl chr10:104,294,518...104,297,024
JBrowse link
G Pcgf1 polycomb group ring finger 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:115,576,165...115,587,019
Ensembl chr 4:115,583,867...115,587,008
JBrowse link
G Pcgf2 polycomb group ring finger 2 part_of ISO
IBA
(PMID:19636380)
GO_REF:0000033
(PMID:16359901)
RGD
GO_Central
PMID:16359901 PMID:19636380 GO_REF:0000033 NCBI chr10:82,682,563...82,694,563
Ensembl chr10:82,683,553...82,693,406
JBrowse link
G Pcgf3 polycomb group ring finger 3 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:1,237,594...1,291,717
Ensembl chr14:1,233,947...1,291,793
JBrowse link
G Pcgf5 polycomb group ring finger 5 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:234,063,854...234,180,022
Ensembl chr 1:234,063,892...234,175,315
JBrowse link
G Pcgf6 polycomb group ring finger 6 part_of ISS
ISO
IBA
GO_REF:0000024
(PMID:19636380)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:19636380 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:245,925,354...245,944,964
Ensembl chr 1:245,925,360...245,944,914
JBrowse link
G Phc1 polyhomeotic homolog 1 part_of ISO
IBA
(PMID:12167701), (PMID:19636380)
GO_REF:0000033
RGD
GO_Central
PMID:12167701 PMID:19636380 GO_REF:0000033 NCBI chr 4:155,510,274...155,532,636
Ensembl chr 4:155,510,274...155,533,959
JBrowse link
G Phc2 polyhomeotic homolog 2 part_of ISO
IBA
(PMID:12167701), (PMID:19636380)
(PMID:16359901)
GO_REF:0000033
RGD
GO_Central
PMID:12167701 PMID:16359901 PMID:19636380 GO_REF:0000033 NCBI chr 5:141,000,604...141,099,268
Ensembl chr 5:141,050,842...141,099,268
JBrowse link
G Phc3 polyhomeotic homolog 3 part_of ISO
IBA
(PMID:12167701), (PMID:19636380)
GO_REF:0000033
RGD
GO_Central
PMID:12167701 PMID:19636380 GO_REF:0000033 NCBI chr 2:112,408,709...112,483,719
Ensembl chr 2:112,408,531...112,476,540
JBrowse link
G Ring1 ring finger protein 1 part_of ISS
ISO
IEA
GO_REF:0000024
(PMID:12167701), (PMID:19636380)
GO_REF:0000107
(PMID:16359901)
UniProt
RGD
Ensembl
PMID:12167701 PMID:16359901 PMID:19636380 GO_REF:0000024 GO_REF:0000107 NCBI chr20:4,830,120...4,833,623
Ensembl chr20:4,830,053...4,833,620
JBrowse link
G Rnf2 ring finger protein 2 part_of ISO
ISS
IEA
(PMID:12167701), (PMID:19636380)
GO_REF:0000024
GO_REF:0000107
(PMID:16359901)
RGD
UniProt
Ensembl
PMID:12167701 PMID:16359901 PMID:19636380 GO_REF:0000024 GO_REF:0000107 NCBI chr13:63,553,964...63,584,047
Ensembl chr13:63,554,862...63,583,099
JBrowse link
G Samd11 sterile alpha motif domain containing 11 part_of ISO (PMID:33603070) RGD PMID:33603070 NCBI chr 5:166,831,681...166,859,805
Ensembl chr 5:166,831,663...166,850,009
JBrowse link
G Samd7 sterile alpha motif domain containing 7 part_of ISO (PMID:28900001), (PMID:33603070) RGD PMID:28900001 PMID:33603070 NCBI chr 2:112,623,135...112,644,269
Ensembl chr 2:112,624,942...112,639,549
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20824
    protein-containing complex 6552
      nuclear protein-containing complex 1279
        nuclear ubiquitin ligase complex 45
          Asi complex 0
          BCOR complex 1
          BRCA1-BARD1 complex 2
          CLRC complex 0
          PRC1 complex 18
          SUMO-targeted ubiquitin ligase complex 0
          anaphase-promoting complex 20
          nuclear SCF ubiquitin ligase complex 0
Path 2
Term Annotations click to browse term
  cellular_component 20824
    cellular anatomical structure 20625
      organelle 13967
        membrane-bounded organelle 12555
          intracellular membrane-bounded organelle 12003
            nucleus 7451
              nuclear protein-containing complex 1279
                nuclear ubiquitin ligase complex 45
                  Asi complex 0
                  BCOR complex 1
                  BRCA1-BARD1 complex 2
                  CLRC complex 0
                  PRC1 complex 18
                  SUMO-targeted ubiquitin ligase complex 0
                  anaphase-promoting complex 20
                  nuclear SCF ubiquitin ligase complex 0
paths to the root