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ONTOLOGY REPORT - ANNOTATIONS

Term:histone deacetylase complex
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Accession:GO:0000118 term browser browse the term
Definition:A protein complex that possesses histone deacetylase activity.
Comment:Note that this term represents a location, not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function of this complex is represented by the molecular function term 'histone deacetylase activity ; GO:0004407'.
Synonyms:exact_synonym: HDAC complex


show annotations for term's descendants           Sort by:
histone deacetylase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbx5 chromobox 5 part_of IEA
ISO 		GO_REF:0000107
(PMID:12242305) 		Ensembl
RGD		 PMID:12242305 GO_REF:0000107 NCBI chr 7:136,203,827...136,254,575
Ensembl chr 7:136,211,649...136,229,118 		JBrowse link
G Dnttip1 deoxynucleotidyltransferase, terminal, interacting protein 1 part_of ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:25653165) 		UniProt
Ensembl
RGD		 PMID:25653165 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:173,901,070...173,924,742
Ensembl chr 3:173,900,945...173,925,098 		JBrowse link
G Hdac1 histone deacetylase 1 part_of ISO (PMID:9651585)
PR:Q80TZ9 (PMID:14645126) 		RGD PMID:9651585 PMID:14645126 NCBI chr 5:147,138,328...147,165,387
Ensembl chr 5:147,138,156...147,165,387 		JBrowse link
G Hdac10 histone deacetylase 10 part_of ISO (PMID:11861901) RGD PMID:11861901 NCBI chr 7:122,078,768...122,084,457
Ensembl chr 7:122,078,768...122,083,870 		JBrowse link
G Hdac11 histone deacetylase 11 part_of ISO
IEA
IBA 		(PMID:11948178)
GO_REF:0000117
GO_REF:0000033 		RGD
UniProt
GO_Central		 PMID:11948178 GO_REF:0000033 GO_REF:0000117 NCBI chr 4:125,203,044...125,224,584
Ensembl chr 4:125,202,299...125,224,582 		JBrowse link
G Hdac2 histone deacetylase 2 part_of ISO
IEA 		(PMID:9651585)
GO_REF:0000107 		RGD
Ensembl		 PMID:9651585 GO_REF:0000107 NCBI chr20:42,101,815...42,126,486
Ensembl chr20:42,102,861...42,126,311 		JBrowse link
G Hdac3 histone deacetylase 3 part_of ISO
IBA
IEA 		(PMID:18326024)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:18326024 GO_REF:0000033 GO_REF:0000107 NCBI chr18:30,021,847...30,041,061
Ensembl chr18:30,021,941...30,041,025 		JBrowse link
G Hdac4 histone deacetylase 4 part_of ISO
IBA 		(PMID:11804585)
GO_REF:0000033 		RGD
GO_Central		 PMID:11804585 GO_REF:0000033 NCBI chr 9:99,950,972...100,200,994
Ensembl chr 9:99,955,116...100,197,637 		JBrowse link
G Hdac5 histone deacetylase 5 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:87,653,139...87,688,078
Ensembl chr10:87,652,656...87,694,244 		JBrowse link
G Hdac6 histone deacetylase 6 part_of ISO
IEA 		(PMID:11948178)
GO_REF:0000107 		RGD
Ensembl		 PMID:11948178 GO_REF:0000107 NCBI chr  X:17,222,538...17,244,373
Ensembl chr  X:17,222,856...17,244,370 		JBrowse link
G Hdac7 histone deacetylase 7 part_of TAS PMID:12711221 UniProt PMID:12711221 RGD:8553516 NCBI chr 7:130,803,013...130,841,181
Ensembl chr 7:130,803,013...130,841,017 		JBrowse link
G Hdac8 histone deacetylase 8 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:71,425,240...71,632,865
Ensembl chr  X:71,394,928...71,632,865 		JBrowse link
G Hdac9 histone deacetylase 9 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:56,489,472...57,351,654
Ensembl chr 6:56,490,988...57,351,835 		JBrowse link
G Hint1 histidine triad nucleotide binding protein 1 part_of ISS
ISO 		GO_REF:0000024
(PMID:16835243) 		UniProt
RGD		 PMID:16835243 GO_REF:0000024 NCBI chr10:39,490,225...39,493,970
Ensembl chr 4:93,430,926...93,431,642
Ensembl chr10:93,430,926...93,431,642 		JBrowse link
G Hr HR, lysine demethylase and nuclear receptor corepressor part_of IDA
IBA
IEA 		matrix-associated deacetylase (MAD) bodies
GO_REF:0000033
GO_REF:0000104 		GO_Central
UniProt
RGD		 PMID:11641275 GO_REF:0000033 GO_REF:0000104, RGD:1599577 NCBI chr15:52,036,540...52,056,019
Ensembl chr15:52,036,540...52,056,015 		JBrowse link
G Jmjd1c jumonji domain containing 1C part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:21,330,990...21,508,580
Ensembl chr20:21,330,990...21,461,916 		JBrowse link
G Kdm3a lysine demethylase 3A part_of IEA
IBA 		GO_REF:0000104
GO_REF:0000033 		UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000104 NCBI chr 4:105,189,208...105,233,526
Ensembl chr 4:105,189,208...105,233,370 		JBrowse link
G Kdm3b lysine demethylase 3B part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000104 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104 NCBI chr18:26,655,004...26,710,814
Ensembl chr18:26,655,687...26,710,814 		JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 part_of IEA
ISO 		GO_REF:0000107
(PMID:11274056)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:11274056 GO_REF:0000107 GO_REF:0000117 NCBI chr18:66,449,196...66,516,112
Ensembl chr18:66,449,358...66,516,111 		JBrowse link
G Mecom MDS1 and EVI1 complex locus located_in ISO (PMID:11568182) RGD PMID:11568182 NCBI chr 2:114,837,815...115,393,052
Ensembl chr 2:114,837,840...115,393,038 		JBrowse link
G Mideas mitotic deacetylase associated SANT domain protein part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:109,519,011...109,585,631
Ensembl chr 6:109,519,011...109,560,312 		JBrowse link
G Mta2 metastasis associated 1 family, member 2 part_of IEA
ISO 		GO_REF:0000107
(PMID:10444591) 		Ensembl
RGD		 PMID:10444591 GO_REF:0000107 NCBI chr 1:215,267,286...215,276,008
Ensembl chr 1:215,267,046...215,276,062 		JBrowse link
G Ncor1 nuclear receptor co-repressor 1 part_of ISO (PMID:18326024) RGD PMID:18326024 NCBI chr10:47,498,852...47,641,612
Ensembl chr10:47,498,852...47,640,350 		JBrowse link
G Ncor2 nuclear receptor co-repressor 2 part_of ISO (PMID:15832170) RGD PMID:15832170 NCBI chr12:37,127,736...37,289,612
Ensembl chr12:37,127,686...37,289,612 		JBrowse link
G Nrip1 nuclear receptor interacting protein 1 part_of ISO UniProtKB:O15379 (PMID:11278635) RGD PMID:11278635 NCBI chr11:28,382,835...28,466,483
Ensembl chr11:28,378,878...28,467,353 		JBrowse link
G Phf21a PHD finger protein 21A part_of ISO
IEA 		(PMID:15325272)
GO_REF:0000107 		RGD
Ensembl		 PMID:15325272 GO_REF:0000107 NCBI chr 3:98,600,933...98,791,132
Ensembl chr 3:98,613,844...98,787,350 		JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor part_of ISO (PMID:9651585) RGD PMID:9651585 NCBI chr 5:146,940,207...146,959,501
Ensembl chr 5:146,922,611...146,959,501 		JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor part_of ISO
IEA 		(PMID:9651585)
GO_REF:0000107 		RGD
Ensembl		 PMID:9651585 GO_REF:0000107 NCBI chr  X:35,544,873...35,563,030
Ensembl chr  X:35,544,873...35,563,030 		JBrowse link
G Rcor1 REST corepressor 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:135,890,851...135,967,367
Ensembl chr 6:135,890,851...135,967,367 		JBrowse link
G Rcor2 REST corepressor 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:213,882,585...213,890,022
Ensembl chr 1:213,878,519...213,890,022 		JBrowse link
G Rcor3 REST corepressor 3 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:106,156,166...106,196,542
Ensembl chr13:106,157,232...106,196,575 		JBrowse link
G Rere arginine-glutamic acid dipeptide repeats part_of IEA
ISO 		GO_REF:0000107
PR:O09106 (PMID:14645126) 		Ensembl
RGD		 PMID:14645126 GO_REF:0000107 NCBI chr 5:166,048,770...166,380,559
Ensembl chr 5:166,048,844...166,380,558 		JBrowse link
G Sap30 Sin3A associated protein 30 part_of ISO
IEA 		(PMID:9651585)
GO_REF:0000107 		RGD
Ensembl		 PMID:9651585 GO_REF:0000107 NCBI chr16:37,758,494...37,763,825
Ensembl chr16:37,757,656...37,763,823 		JBrowse link
G Sap30l SAP30-like part_of ISO
IBA 		(PMID:18070604)
GO_REF:0000033 		RGD
GO_Central		 PMID:18070604 GO_REF:0000033 NCBI chr10:42,480,201...42,488,139
Ensembl chr10:42,480,201...42,488,139 		JBrowse link
G Satb2 SATB homeobox 2 part_of IEA
ISO 		GO_REF:0000107
(PMID:18255031) 		Ensembl
RGD		 PMID:18255031 GO_REF:0000107 NCBI chr 9:65,842,351...66,028,569
Ensembl chr 9:65,844,570...66,021,238 		JBrowse link
G Sin3a SIN3 transcription regulator family member A part_of ISO
IEA 		(PMID:9651585)
GO_REF:0000107 		RGD
Ensembl		 PMID:9651585 GO_REF:0000107 NCBI chr 8:66,377,471...66,432,150
Ensembl chr 8:66,381,657...66,434,542 		JBrowse link
G Tbl1x transducin (beta)-like 1 X-linked part_of ISO
IBA 		(PMID:18326024)
GO_REF:0000033 		RGD
GO_Central		 PMID:18326024 GO_REF:0000033 NCBI chr  X:45,452,983...45,609,532
Ensembl chr  X:45,454,482...45,609,525 		JBrowse link
G Tbl1xr1 TBL1X/Y related 1 part_of ISO
IBA 		(PMID:18326024)
GO_REF:0000033 		RGD
GO_Central		 PMID:18326024 GO_REF:0000033 NCBI chr 2:106,718,811...106,857,989
Ensembl chr 2:106,730,665...106,857,989 		JBrowse link
G Trerf1 transcriptional regulating factor 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:21,131,772...21,355,830
Ensembl chr 9:21,131,777...21,176,016 		JBrowse link
G Zfp217 zinc finger protein 217 part_of ISO
IEA 		(PMID:18625718)
GO_REF:0000107 		RGD
Ensembl		 PMID:18625718 GO_REF:0000107 NCBI chr 3:179,309,178...179,349,853
Ensembl chr 3:179,310,973...179,321,892 		JBrowse link
G Zfp541 zinc finger protein 541 part_of IBA
ISO 		GO_REF:0000033
(PMID:18849567) 		GO_Central
RGD		 PMID:18849567 GO_REF:0000033 NCBI chr 1:85,878,329...85,914,754
Ensembl chr 1:85,878,392...85,913,183 		JBrowse link
NuRD complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2ap1 cyclin-dependent kinase 2 associated protein 1 part_of ISO (PMID:20523938), (PMID:33283408) RGD PMID:20523938 PMID:33283408 NCBI chr12:37,910,718...37,919,446
Ensembl chr12:37,910,718...37,919,446 		JBrowse link
G Cdk2ap2 cyclin-dependent kinase 2 associated protein 2 part_of ISO
IEA 		(PMID:33283408)
GO_REF:0000107 		RGD
Ensembl		 PMID:33283408 GO_REF:0000107 NCBI chr 1:210,819,155...210,822,604
Ensembl chr 1:210,820,507...210,823,010 		JBrowse link
G Chd3 chromodomain helicase DNA binding protein 3 part_of ISO
IEA
IBA 		UniProtKB:O94776|UniProtKB:O95983|UniProtKB:Q09028|UniProtKB:Q92769 (PMID:17827154), (PMID:27068747), (PMID:33283408)
(PMID:10204490)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:10204490 PMID:17827154 PMID:27068747 PMID:33283408 GO_REF:0000033 GO_REF:0000107 NCBI chr10:54,562,437...54,588,842
Ensembl chr10:54,562,437...54,588,810 		JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 part_of ISO
IEA
IBA 		(PMID:19644445), (PMID:33283408)
(PMID:22075476)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000033 		RGD
UniProt
Ensembl
GO_Central		 PMID:19644445 PMID:22075476 PMID:33283408 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 4:159,584,623...159,617,867
Ensembl chr 4:159,584,654...159,617,866 		JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 part_of ISS
ISO
IBA 		GO_REF:0000024
(PMID:21931736)
GO_REF:0000033 		UniProt
RGD
GO_Central		 PMID:21931736 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:168,130,851...168,181,705
Ensembl chr 5:168,130,575...168,179,441 		JBrowse link
G Gatad2a GATA zinc finger domain containing 2A part_of ISO
IBA 		(PMID:12183469), (PMID:33283408)
GO_REF:0000033 		RGD
GO_Central		 PMID:12183469 PMID:33283408 GO_REF:0000033 NCBI chr16:19,463,500...19,553,497
Ensembl chr16:19,463,500...19,553,497 		JBrowse link
G Gatad2b GATA zinc finger domain containing 2B part_of ISO
IEA
IBA 		(PMID:33283408)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:33283408 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:178,046,192...178,127,633
Ensembl chr 2:178,046,085...178,147,315 		JBrowse link
G Hdac1 histone deacetylase 1 part_of ISS
ISO
IBA 		GO_REF:0000024
PR:Q8K4B0|PR:Q9R190|PR:Q9Z2D8 (PMID:11836251), (PMID:14645126), (PMID:16462733), (PMID:22075476)
GO_REF:0000033
(PMID:17827154), (PMID:19644445), (PMID:22926524), (PMID:33283408) 		UniProt
RGD
GO_Central		 PMID:11836251 PMID:14645126 PMID:16462733 PMID:17827154 PMID:19644445 More... GO_REF:0000024 GO_REF:0000033 NCBI chr 5:147,138,328...147,165,387
Ensembl chr 5:147,138,156...147,165,387 		JBrowse link
G Hdac1l histone deacetylase 1-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:87,901,045...87,903,045
Ensembl chr 9:87,896,472...87,903,613 		JBrowse link
G Hdac2 histone deacetylase 2 part_of ISO
IEA
IBA 		(PMID:17827154), (PMID:19644445), (PMID:22926524), (PMID:33283408)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:17827154 PMID:19644445 PMID:22926524 PMID:33283408 GO_REF:0000033 GO_REF:0000107 NCBI chr20:42,101,815...42,126,486
Ensembl chr20:42,102,861...42,126,311 		JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 part_of ISO
IEA 		(PMID:33283408)
GO_REF:0000107 		RGD
Ensembl		 PMID:33283408 GO_REF:0000107 NCBI chr18:66,449,196...66,516,112
Ensembl chr18:66,449,358...66,516,111 		JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 part_of ISO
IEA 		(PMID:33283408)
PR:O09106|PR:Q8K4B0|PR:Q9R190 (PMID:16462733)
GO_REF:0000107 		RGD
Ensembl		 PMID:16462733 PMID:33283408 GO_REF:0000107 NCBI chr 7:9,961,053...9,970,845
Ensembl chr 7:9,963,797...9,970,265 		JBrowse link
G Mta1 metastasis associated 1 part_of ISS
ISO
IBA
IEA 		GO_REF:0000024
PR:O09106|PR:Q9R190|PR:Q9Z2D8 (PMID:16462733)
GO_REF:0000033
GO_REF:0000107
(PMID:22926524), (PMID:33283408) 		UniProt
RGD
GO_Central
Ensembl		 PMID:16462733 PMID:22926524 PMID:33283408 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:137,999,845...138,038,696
Ensembl chr 6:137,999,915...138,038,696 		JBrowse link
G Mta2 metastasis associated 1 family, member 2 part_of ISO
IEA
IBA 		(PMID:19644445), (PMID:22926524), (PMID:33283408)
PR:O09106|PR:Q8K4B0|PR:Q9Z2D8 (PMID:14645126), (PMID:16462733)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:14645126 PMID:16462733 PMID:19644445 PMID:22926524 PMID:33283408 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:215,267,286...215,276,008
Ensembl chr 1:215,267,046...215,276,062 		JBrowse link
G Mta3 metastasis associated 1 family, member 3 part_of ISO
IEA
IBA 		(PMID:22926524), (PMID:33283408)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:22926524 PMID:33283408 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:16,619,575...16,739,732
Ensembl chr 6:16,621,998...16,739,485 		JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor part_of ISO
IBA 		(PMID:19644445), (PMID:22926524), (PMID:33283408)
(PMID:14645126)
GO_REF:0000033 		RGD
GO_Central		 PMID:14645126 PMID:19644445 PMID:22926524 PMID:33283408 GO_REF:0000033 NCBI chr 5:146,940,207...146,959,501
Ensembl chr 5:146,922,611...146,959,501 		JBrowse link
G Rbbp4l1 RB binding protein 4, chromatin remodeling factor like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:156,268,806...156,270,963
Ensembl chr 2:156,268,880...156,270,682 		JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor part_of ISS
ISO
IEA
IBA 		GO_REF:0000024
(PMID:14645126)
GO_REF:0000107
GO_REF:0000033
(PMID:19644445), (PMID:22926524), (PMID:33283408) 		UniProt
RGD
Ensembl
GO_Central		 PMID:14645126 PMID:19644445 PMID:22926524 PMID:33283408 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:35,544,873...35,563,030
Ensembl chr  X:35,544,873...35,563,030 		JBrowse link
G Sall1 spalt-like transcription factor 1 part_of ISO (PMID:11836251) RGD PMID:11836251 NCBI chr19:34,179,316...34,196,278
Ensembl chr19:34,181,078...34,196,278 		JBrowse link
Rpd3L-Expanded complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kmt2e lysine methyltransferase 2E part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:12,550,570...12,655,329
Ensembl chr 4:12,550,570...12,619,721 		JBrowse link
G Setd5 SET domain containing 5 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:147,772,955...147,850,669
Ensembl chr 4:147,773,028...147,850,667 		JBrowse link
Set3 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kmt2e lysine methyltransferase 2E part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:12,550,570...12,655,329
Ensembl chr 4:12,550,570...12,619,721 		JBrowse link
G Setd5 SET domain containing 5 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:147,772,955...147,850,669
Ensembl chr 4:147,773,028...147,850,667 		JBrowse link
Sin3-type complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brms1 BRMS1, transcriptional repressor and anoikis regulator part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:211,775,142...211,784,411
Ensembl chr 1:211,775,095...211,784,410 		JBrowse link
G Brms1l BRMS1 like transcriptional repressor part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:79,001,803...79,035,735
Ensembl chr 6:79,000,615...79,035,734 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 part_of ISO (PMID:17827154) RGD PMID:17827154 NCBI chr 3:161,170,295...161,217,073
Ensembl chr 3:161,170,405...161,215,698 		JBrowse link
G Hdac1 histone deacetylase 1 part_of ISO (PMID:17827154) RGD PMID:17827154 NCBI chr 5:147,138,328...147,165,387
Ensembl chr 5:147,138,156...147,165,387 		JBrowse link
G Hdac2 histone deacetylase 2 part_of ISO
IEA 		(PMID:14966270), (PMID:17827154)
GO_REF:0000107 		RGD
Ensembl		 PMID:14966270 PMID:17827154 GO_REF:0000107 NCBI chr20:42,101,815...42,126,486
Ensembl chr20:42,102,861...42,126,311 		JBrowse link
G Ing2 inhibitor of growth family, member 2 part_of ISO (PMID:16387653) RGD PMID:16387653 NCBI chr16:51,305,311...51,316,177
Ensembl chr16:51,307,466...51,316,177 		JBrowse link
G Morf4l1 mortality factor 4 like 1 part_of ISS
ISO
IEA 		GO_REF:0000024
(PMID:14966270)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:14966270 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:99,522,801...99,544,432
Ensembl chr 8:99,500,898...99,544,331 		JBrowse link
G Phf12 PHD finger protein 12 part_of ISO
IBA
IEA 		(PMID:22048773)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:22048773 GO_REF:0000033 GO_REF:0000107 NCBI chr10:63,368,547...63,417,079
Ensembl chr10:63,370,210...63,417,073 		JBrowse link
G Sap130 Sin3A associated protein 130 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:23,518,773...23,619,840
Ensembl chr18:23,518,680...23,619,840 		JBrowse link
G Sin3a SIN3 transcription regulator family member A part_of ISO
IBA
IEA 		(PMID:14966270), (PMID:17827154)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:14966270 PMID:17827154 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:66,377,471...66,432,150
Ensembl chr 8:66,381,657...66,434,542 		JBrowse link
G Sin3b SIN3 transcription regulator family member B part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:17,157,352...17,194,051
Ensembl chr16:17,157,352...17,270,664 		JBrowse link
G Sinhcaf SIN3-HDAC complex associated factor part_of ISO
IBA 		(PMID:22984288)
GO_REF:0000033 		RGD
GO_Central		 PMID:22984288 GO_REF:0000033 NCBI chr 4:183,619,647...183,644,628
Ensembl chr 4:183,619,658...183,641,626 		JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component part_of IBA
ISO 		GO_REF:0000033
(PMID:11909966) 		GO_Central
RGD		 PMID:11909966 GO_REF:0000033 NCBI chr12:45,137,964...45,160,413
Ensembl chr12:45,138,400...45,160,411 		JBrowse link
Swr1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr6 actin related protein 6 part_of IBA
ISO 		GO_REF:0000033
(PMID:30337683) 		GO_Central
RGD		 PMID:30337683 GO_REF:0000033 NCBI chr 7:26,037,574...26,058,362
Ensembl chr 7:26,037,574...26,060,604 		JBrowse link
G Anp32e acidic nuclear phosphoprotein 32 family member E part_of ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:24463511) 		UniProt
Ensembl
RGD		 PMID:24463511 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:186,161,520...186,177,984
Ensembl chr 2:186,161,532...186,177,986 		JBrowse link
G Brd8 bromodomain containing 8 part_of ISO
IEA 		(PMID:24463511)
GO_REF:0000107 		RGD
Ensembl		 PMID:24463511 GO_REF:0000107 NCBI chr18:26,455,824...26,504,106
Ensembl chr18:26,455,512...26,504,006 		JBrowse link
G Cfdp1 craniofacial development protein 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:56,627,596...56,733,099
Ensembl chr19:56,626,963...56,733,098 		JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:136,380,211...136,388,229
Ensembl chr 5:136,380,216...136,388,219 		JBrowse link
G Ep400 E1A binding protein p400 part_of ISO
IEA
IBA 		(PMID:24463511)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:24463511 GO_REF:0000033 GO_REF:0000107 NCBI chr12:51,551,665...51,658,635
Ensembl chr12:51,551,695...51,658,634 		JBrowse link
G Ing3 inhibitor of growth family, member 3 part_of ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:24463511) 		UniProt
Ensembl
RGD		 PMID:24463511 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:51,439,218...51,469,502
Ensembl chr 4:51,443,763...51,470,951 		JBrowse link
G Kat5 lysine acetyltransferase 5 part_of ISO
IEA
ISS 		(PMID:24463511)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:24463511 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:212,325,089...212,332,640
Ensembl chr 1:212,325,090...212,332,587 		JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 part_of ISS
IBA
ISO 		GO_REF:0000024
GO_REF:0000033
(PMID:24463511), (PMID:30337683) 		UniProt
GO_Central
RGD		 PMID:24463511 PMID:30337683 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:122,489,754...122,524,666
Ensembl chr 4:122,489,680...122,524,665 		JBrowse link
G Ruvbl1-ps1 RuvB-like AAA ATPase 1, pseudogene 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:4,193,748...4,195,389
Ensembl chr  X:4,193,801...4,195,311 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 part_of IBA
ISO
IEA 		GO_REF:0000033
(PMID:24463511), (PMID:30337683)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:24463511 PMID:30337683 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:105,038,487...105,051,851
Ensembl chr 1:105,038,174...105,051,720 		JBrowse link
G Srcap Snf2-related CREBBP activator protein part_of IBA
ISO 		GO_REF:0000033
(PMID:16634648), (PMID:17617668), (PMID:30337683) 		GO_Central
RGD		 PMID:16634648 PMID:17617668 PMID:30337683 GO_REF:0000033 NCBI chr 1:191,554,043...191,607,096
Ensembl chr 1:191,554,043...191,604,265 		JBrowse link
G Trrap transformation/transcription domain-associated protein part_of ISO (PMID:24463511) RGD PMID:24463511 NCBI chr12:14,851,758...14,941,444
Ensembl chr12:14,851,758...14,941,407 		JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:25,323,292...25,329,566
Ensembl chr12:25,323,114...25,329,563 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19485
    protein-containing complex 6265
      catalytic complex 1874
        histone deacetylase complex 80
          HDA1 complex 0
          NuRD complex + 19
          Rpd3L-Expanded complex 2
          Set3 complex 2
          Sin3-type complex + 13
          Snt2C complex 0
          Swr1 complex 14
Path 2
Term Annotations click to browse term
  cellular_component 19485
    cellular anatomical structure 19353
      organelle 13686
        intracellular organelle 13261
          intracellular membrane-bounded organelle 11899
            nucleus 7471
              nuclear lumen 4263
                nucleoplasm 3734
                  histone deacetylase complex 80
                    HDA1 complex 0
                    NuRD complex + 19
                    Rpd3L-Expanded complex 2
                    Set3 complex 2
                    Sin3-type complex + 13
                    Snt2C complex 0
                    Swr1 complex 14
paths to the root