Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

EXPERIMENTAL FACTOR ONTOLOGY - ANNOTATIONS

Term:lycopene measurement
go back to main search page
Accession:EFO:0007801 term browser browse the term
Definition:quantification in a sample (eg blood) of lycopene, a bright red carotene and carotenoid pigment and phytochemical found in tomatoes and other red fruits and vegetables, such as red carrots, watermelons and papayas


show annotations for term's descendants           Sort by:
lycopene measurement term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
V rs2232315 IAGP GWAS_CATALOG PMID:26861389 NCBI chr 2:168,900,922...168,900,923 JBrowse link
V rs341075 IAGP GWAS_CATALOG PMID:26861389 NCBI chr11:72,546,919...72,546,920 JBrowse link
V rs4635297 IAGP GWAS_CATALOG PMID:26861389 NCBI chr15:38,035,207...38,035,208 JBrowse link
V rs6108801 IAGP GWAS_CATALOG PMID:26861389 NCBI chr20:11,008,871...11,008,872 JBrowse link
V rs7680948 IAGP GWAS_CATALOG PMID:26861389 NCBI chr 4:139,525,951...139,525,952 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  experimental factor 52367
    information entity 41340
      measurement 41333
        carotenoid measurement 4
          lycopene measurement 0
paths to the root