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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Breast Neoplasms
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Accession:DOID:9008939 term browser browse the term
Definition:Tumors or cancer of the human BREAST.
Synonyms:exact_synonym: breast neoplasm;   breast tumor;   breast tumors;   human mammary neoplasm;   human mammary neoplasms
 narrow_synonym: BRIP1-related disorder
 primary_id: MESH:D001943
 xref: EFO:0003869


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Breast Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1 ATP binding cassette subfamily B member 1 ISO CTD Direct Evidence: marker/mechanism
DNA:polymorphism: :3435C>T (human)
CTD
RGD
PMID:19752884 PMID:22311042 RGD:2315550 NCBI chrNW_004936763:1,225,355...1,308,257
Ensembl chrNW_004936763:1,226,482...1,297,427
JBrowse link
G Abcc1 ATP binding cassette subfamily C member 1 (ABCC1 blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:25078270 NCBI chrNW_004936501:3,400,971...3,467,061
Ensembl chrNW_004936501:3,401,285...3,470,460
JBrowse link
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:20234815 NCBI chrNW_004936487:17,690,206...17,819,619
Ensembl chrNW_004936487:17,690,968...17,819,669
JBrowse link
G Acacb acetyl-CoA carboxylase beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:35191604 NCBI chrNW_004936769:950,970...1,053,671
Ensembl chrNW_004936769:950,845...1,051,887
JBrowse link
G Ache acetylcholinesterase (Cartwright blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:23063927 NCBI chrNW_004936543:856,678...862,080
Ensembl chrNW_004936543:856,676...862,109
JBrowse link
G Acta2 actin alpha 2, smooth muscle ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chrNW_004936735:266,918...283,858
Ensembl chrNW_004936735:266,754...284,377
JBrowse link
G Acvr1 activin A receptor type 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23180569 NCBI chrNW_004936469:20,743,195...20,811,567
Ensembl chrNW_004936469:20,743,213...20,811,569
JBrowse link
G Adam10 ADAM metallopeptidase domain 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16583263 NCBI chrNW_004936471:19,760,709...19,911,759
Ensembl chrNW_004936471:19,758,118...19,911,759
JBrowse link
G Adam33 ADAM metallopeptidase domain 33 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30226539 NCBI chrNW_004936485:15,005,329...15,018,063
Ensembl chrNW_004936485:15,007,485...15,017,497
JBrowse link
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23289900 NCBI chrNW_004936640:959,405...967,305
Ensembl chrNW_004936640:959,417...968,842
JBrowse link
G Adar adenosine deaminase RNA specific ISO CTD Direct Evidence: marker/mechanism CTD PMID:28188287 NCBI chrNW_004936580:4,183,016...4,208,341
Ensembl chrNW_004936580:4,183,079...4,203,435
JBrowse link
G Afp alpha fetoprotein ISO CTD Direct Evidence: therapeutic CTD PMID:18497072 NCBI chrNW_004936598:2,058,474...2,077,711
Ensembl chrNW_004936598:2,058,117...2,077,728
JBrowse link
G Ager advanced glycosylation end-product specific receptor no_association ISO DNA:SNP, haplotype: :rs184003 (human)
DNA:SNPs, insertion/deletion:promoter, :-374T>A, -429T/C (human)
RGD PMID:18058469 PMID:22497255 PMID:24619131 RGD:8695964 RGD:8695984 RGD:8695989 NCBI chrNW_004936727:1,418,342...1,422,005
Ensembl chrNW_004936727:1,418,799...1,422,147
JBrowse link
G Agr2 anterior gradient 2, protein disulphide isomerase family member ISO CTD Direct Evidence: marker/mechanism CTD PMID:20531310 NCBI chrNW_004936546:3,316,622...3,328,317
Ensembl chrNW_004936546:3,315,543...3,328,369
JBrowse link
G Ahr aryl hydrocarbon receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:21515334 PMID:22296396 NCBI chrNW_004936546:3,737,908...3,783,492
Ensembl chrNW_004936546:3,737,851...3,783,588
JBrowse link
G Akap12 A-kinase anchoring protein 12 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936489:4,237,466...4,258,408
Ensembl chrNW_004936489:4,237,439...4,261,141
JBrowse link
G Akt1 AKT serine/threonine kinase 1 susceptibility ISO DNA:point mutation:cds:p.E17K (human)
ClinVar Annotator: match by term: Breast Neoplasms
RGD
ClinVar
PMID:17611497 PMID:18256540 PMID:18392055 PMID:18504432 PMID:18611285 More... RGD:1643334 NCBI chrNW_004936621:620,163...639,115
Ensembl chrNW_004936621:620,074...639,093
JBrowse link
G Akt2 AKT serine/threonine kinase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19075277 NCBI chrNW_004936661:2,652,568...2,694,039
Ensembl chrNW_004936661:2,652,566...2,694,086
JBrowse link
G Alk ALK receptor tyrosine kinase ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:18724359 PMID:18923523 PMID:18923524 PMID:18923525 PMID:21242967 More... NCBI chrNW_004936493:3,624,288...3,671,567
Ensembl chrNW_004936493:3,028,608...3,671,874
JBrowse link
G Alkbh8 alkB homolog 8, tRNA methyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004936551:1,070,484...1,123,427
Ensembl chrNW_004936551:1,076,117...1,123,877
JBrowse link
G Ang angiogenin disease_progression ISO protein:increased expression:breast RGD PMID:9539780 PMID:9748135 PMID:15776477 RGD:2325702 RGD:2325712 RGD:2325714 NCBI chrNW_004936880:39,372...40,070 JBrowse link
G Angptl4 angiopoietin like 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21489049 NCBI chrNW_004936588:5,188,866...5,194,924
Ensembl chrNW_004936588:5,188,850...5,194,931
JBrowse link
G Ankrd34a ankyrin repeat domain 34A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936867:693,797...696,820
Ensembl chrNW_004936867:693,800...696,826
JBrowse link
G Anxa1 annexin A1 disease_progression ISO RGD PMID:20353277 RGD:7421540 NCBI chrNW_004936503:9,124,314...9,142,372
Ensembl chrNW_004936503:9,124,264...9,142,413
JBrowse link
G Apc2 APC regulator of WNT signaling pathway 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004936588:767,115...787,321
Ensembl chrNW_004936588:767,066...786,951
JBrowse link
G Aprt adenine phosphoribosyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004936641:913,674...916,312
Ensembl chrNW_004936641:913,475...918,748
JBrowse link
G Ar androgen receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:21633166 PMID:22174584 NCBI chrNW_004936635:485,903...647,820
Ensembl chrNW_004936635:485,903...647,932
JBrowse link
G Araf A-Raf proto-oncogene, serine/threonine kinase ISO CTD Direct Evidence: therapeutic CTD PMID:12432273 NCBI chrNW_004936502:13,323,365...13,335,003
Ensembl chrNW_004936502:13,323,355...13,335,224
JBrowse link
G Areg amphiregulin ISO CTD Direct Evidence: therapeutic CTD PMID:11237771 NCBI chrNW_004936598:1,276,599...1,283,612
Ensembl chrNW_004936598:1,274,565...1,283,746
JBrowse link
G Arf1 ADP ribosylation factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27517156 NCBI chrNW_004936864:117,510...119,612 JBrowse link
G Arhgdia Rho GDP dissociation inhibitor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004936594:5,383,370...5,386,618
Ensembl chrNW_004936594:5,383,380...5,386,494
JBrowse link
G Arid1a AT-rich interaction domain 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:31932695 NCBI chrNW_004936474:11,148,857...11,197,312 JBrowse link
G Arrdc3 arrestin domain containing 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25038754 NCBI chrNW_004936469:9,364,291...9,377,504
Ensembl chrNW_004936469:9,364,347...9,377,501
JBrowse link
G Artn artemin ISO CTD Direct Evidence: marker/mechanism CTD PMID:20305694 NCBI chrNW_004936474:25,252,510...25,254,221
Ensembl chrNW_004936474:25,252,684...25,253,810
JBrowse link
G Atg10 autophagy related 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936469:1,241,854...1,506,174
Ensembl chrNW_004936469:1,242,111...1,505,743
JBrowse link
G Atm ATM serine/threonine kinase ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:6504056 PMID:7792600 PMID:8755918 PMID:8797579 PMID:8808599 More... NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211
JBrowse link
G Atp6ap1l ATPase H+ transporting accessory protein 1 like ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936469:1,539,985...1,562,286 JBrowse link
G Atp7b ATPase copper transporting beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:11802810 NCBI chrNW_004936565:4,694,294...4,763,661
Ensembl chrNW_004936565:4,694,281...4,763,773
JBrowse link
G Aurka aurora kinase A ISO CTD Direct Evidence: marker/mechanism CTD PMID:18497064 NCBI chrNW_004936875:295,238...310,457 JBrowse link
G B4gat1 beta-1,4-glucuronyltransferase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936599:3,257,329...3,259,614
Ensembl chrNW_004936599:3,257,329...3,259,719
JBrowse link
G Bag1 BAG cochaperone 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19066611 NCBI chrNW_004936524:1,793,001...1,804,145
Ensembl chrNW_004936524:1,791,119...1,804,151
JBrowse link
G Bap1 BRCA1 associated protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25231345 PMID:26719535 NCBI chrNW_004936473:3,239,009...3,247,806
Ensembl chrNW_004936473:3,239,010...3,247,806
JBrowse link
G Bard1 BRCA1 associated RING domain 1 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:20077502 PMID:21344236 PMID:25085752 PMID:25741868 PMID:26315354 More... NCBI chrNW_004936586:2,200,211...2,272,781
Ensembl chrNW_004936586:2,200,205...2,273,307
JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO CTD Direct Evidence: therapeutic CTD PMID:22572619 NCBI chrNW_004936664:2,968,103...2,973,652
Ensembl chrNW_004936664:2,967,865...2,973,820
JBrowse link
G Bcar3 BCAR3 adaptor protein, NSP family member ISO CTD Direct Evidence: marker/mechanism CTD PMID:19075277 NCBI chrNW_004936537:5,548,422...5,662,219 JBrowse link
G Bche butyrylcholinesterase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23063927 NCBI chrNW_004936707:1,784,338...1,913,401
Ensembl chrNW_004936707:1,854,444...1,913,460
JBrowse link
G Bcl2 BCL2 apoptosis regulator disease_progression ISO CTD Direct Evidence: marker/mechanism
protein:increased expression:breast
associated with Papillomavirus Infections;protein:increased expression:breast
DNA:polymorphism:promoter:-938C>A
CTD
RGD
PMID:12517783 PMID:16954440 PMID:17908970 PMID:18427947 PMID:18430249 More... RGD:2292908 RGD:2292909 RGD:2293016 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921
JBrowse link
G Bcl2a1 BCL2 related protein A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17659439 NCBI chrNW_004936471:37,981,851...37,993,097
Ensembl chrNW_004936471:37,981,772...37,993,116
JBrowse link
G Bcl2l1 BCL2 like 1 ISO RGD PMID:17675586 RGD:1643478 NCBI chrNW_004936485:18,654,046...18,707,324 JBrowse link
G Bgn biglycan ISO CTD Direct Evidence: marker/mechanism CTD PMID:35234341 NCBI chrNW_004936809:375,589...389,718
Ensembl chrNW_004936809:375,543...389,756
JBrowse link
G Birc2 baculoviral IAP repeat containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chrNW_004936551:5,515,904...5,535,864 JBrowse link
G Birc5 baculoviral IAP repeat containing 5 disease_progression ISO protein:increased expression:breast
CTD Direct Evidence: marker/mechanism
mRNA:increased expression:blood
RGD
CTD
PMID:16322251 PMID:16818634 PMID:17086357 PMID:17240580 PMID:18227733 More... RGD:2293090 RGD:2293092 RGD:2293104 RGD:2293105 NCBI chrNW_004936594:2,812,165...2,820,618
Ensembl chrNW_004936594:2,812,238...2,820,636
JBrowse link
G Bmp2 bone morphogenetic protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936485:12,428,765...12,439,570
Ensembl chrNW_004936485:12,428,710...12,439,454
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23180569 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23180569 NCBI chrNW_004936726:1,543,263...1,711,422
Ensembl chrNW_004936726:1,543,245...1,704,541
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:2102266 PMID:12068308 PMID:15035987 PMID:17314276 PMID:18039235 More... NCBI chrNW_004936592:4,728,371...4,833,830
Ensembl chrNW_004936592:4,737,011...4,834,664
JBrowse link
G Brca1 BRCA1 DNA repair associated ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor ClinVar PMID:824983 PMID:2152385 PMID:2504116 PMID:3175448 PMID:6455195 More... NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brca2 BRCA2 DNA repair associated susceptibility ISO DNA:mutation
ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor
RGD
ClinVar
PMID:8075631 PMID:8524414 PMID:8665505 PMID:8673091 PMID:8673092 More... RGD:1599503 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Brf1 BRF1 RNA polymerase III transcription initiation factor subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:32198086 NCBI chrNW_004936621:265,834...329,255
Ensembl chrNW_004936621:265,829...328,040
JBrowse link
G Brip1 BRCA1 interacting helicase 1 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:2455662 PMID:16116421 PMID:16116423 PMID:16116424 PMID:16153896 More... NCBI chrNW_004936490:3,001,445...3,139,538
Ensembl chrNW_004936490:3,003,484...3,137,479
JBrowse link
G Btk Bruton tyrosine kinase ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:24869598 PMID:25082755 PMID:25189416 PMID:25741868 PMID:27199251 More... NCBI chrNW_004936813:429,400...467,481
Ensembl chrNW_004936813:429,224...463,441
JBrowse link
G C1qbp complement C1q binding protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936677:2,371,400...2,376,608
Ensembl chrNW_004936677:2,371,418...2,376,608
JBrowse link
G Cadm1 cell adhesion molecule 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17260099 NCBI chrNW_004936542:569,739...883,738
Ensembl chrNW_004936542:565,843...883,609
JBrowse link
G Casp6 caspase 6 ISO protein:increased expression:breast RGD PMID:10574243 PMID:15210759 RGD:2301338 RGD:2301339 NCBI chrNW_004936563:912,502...920,025
Ensembl chrNW_004936563:911,304...919,119
JBrowse link
G Casp7 caspase 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16583263 NCBI chrNW_004936486:4,082,664...4,114,942
Ensembl chrNW_004936486:4,088,372...4,114,955
JBrowse link
G Casp8 caspase 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15601643 PMID:17293864 PMID:17450141 PMID:29915430 NCBI chrNW_004936726:554,627...596,334
Ensembl chrNW_004936726:554,758...595,922
JBrowse link
G Cat catalase ISO CTD Direct Evidence: marker/mechanism CTD PMID:25322848 NCBI chrNW_004936533:3,601,270...3,637,128
Ensembl chrNW_004936533:3,600,955...3,637,422
JBrowse link
G Cav1 caveolin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19234134 PMID:19288272 PMID:20562527 PMID:21501481 NCBI chrNW_004936589:2,504,235...2,536,778
Ensembl chrNW_004936589:2,504,224...2,537,170
JBrowse link
G Ccl20 C-C motif chemokine ligand 20 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936525:8,238,128...8,240,974
Ensembl chrNW_004936525:8,237,831...8,240,974
JBrowse link
G Ccl5 C-C motif chemokine ligand 5 ISO RGD PMID:18708360 RGD:4891915 NCBI chrNW_004936490:253,279...259,947
Ensembl chrNW_004936490:253,034...259,965
JBrowse link
G Ccnd1 cyclin D1 disease_progression
susceptibility
ISO protein:increased expression:breast
DNA:polymorphism
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:12839951 PMID:15647071 PMID:17255770 PMID:18194538 PMID:19636701 More... RGD:2289126 RGD:2289131 Ensembl chrNW_004936599:973,838...983,316 JBrowse link
G Ccnd2 cyclin D2 ISO DNA, mRNA, protein:hypermethylation, decreased expression:promoter, breast
DNA:hypermethylation:breast
RGD PMID:11289162 PMID:17549626 RGD:2289149 RGD:2289158 NCBI chrNW_004936606:4,474,801...4,496,158
Ensembl chrNW_004936606:4,474,749...4,496,810
JBrowse link
G Ccnd3 cyclin D3 ISO DNA:polymorphism:promoter:-677C>T (human) RGD PMID:19142864 RGD:2316005 NCBI chrNW_004936476:17,799,754...17,886,835
Ensembl chrNW_004936476:17,879,869...17,886,827
JBrowse link
G Ccne1 cyclin E1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19385967 PMID:23624423 NCBI chrNW_004936570:5,536,817...5,547,880
Ensembl chrNW_004936570:5,536,672...5,548,008
JBrowse link
G Ccnh cyclin H ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chrNW_004936469:5,933,163...5,952,190
Ensembl chrNW_004936469:5,935,131...5,952,460
JBrowse link
G Cct5 chaperonin containing TCP1 subunit 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004936643:2,354,799...2,368,048
Ensembl chrNW_004936643:2,354,799...2,368,048
JBrowse link
G Cd109 CD109 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004936859:467,958...595,337
Ensembl chrNW_004936859:484,923...595,316
JBrowse link
G Cd40 CD40 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:17043144 NCBI chrNW_004936514:6,936,915...6,947,246
Ensembl chrNW_004936514:6,936,572...6,947,280
JBrowse link
G Cd44 CD44 molecule (IN blood group) ISO mRNA:splice variants:breast RGD PMID:18091389 RGD:2289345 NCBI chrNW_004936533:2,949,026...3,033,166 JBrowse link
G Cd74 CD74 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:19602265 NCBI chrNW_004936504:4,522,576...4,532,289
Ensembl chrNW_004936504:4,522,751...4,531,750
JBrowse link
G Cda cytidine deaminase ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:10811482 PMID:25330770 NCBI chrNW_004936474:6,543,295...6,564,575
Ensembl chrNW_004936474:6,543,220...6,566,308
JBrowse link
G Cdh1 cadherin 1 ISO ClinVar Annotator: match by term: Breast tumor ClinVar PMID:11305955 PMID:22703879 PMID:24728327 PMID:25741868 PMID:26072394 More... NCBI chrNW_004936475:18,990,529...19,065,954
Ensembl chrNW_004936475:18,990,474...19,067,203
JBrowse link
G Cdh2 cadherin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004936550:6,885,484...7,067,001
Ensembl chrNW_004936550:6,886,706...6,945,056
JBrowse link
G Cdh5 cadherin 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004936475:16,738,772...16,775,000
Ensembl chrNW_004936475:16,738,748...16,775,123
JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A disease_progression ISO DNA:snp: :rs3176336 RGD PMID:16537179 PMID:18174243 RGD:2289652 RGD:2289656 NCBI chrNW_004936476:22,717,308...22,725,127
Ensembl chrNW_004936476:22,717,260...22,725,182
JBrowse link
G Cdkn1b cyclin dependent kinase inhibitor 1B ISO CTD Direct Evidence: marker/mechanism CTD PMID:17092400 NCBI chrNW_004936587:4,573,166...4,578,480
Ensembl chrNW_004936587:4,572,728...4,578,461
JBrowse link
G Cenpf centromere protein F ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004936628:3,642,281...3,695,262
Ensembl chrNW_004936628:3,643,000...3,695,221
JBrowse link
G Cfl1 cofilin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004936599:3,678,724...3,682,314
Ensembl chrNW_004936599:3,677,804...3,682,307
JBrowse link
G Cftr CF transmembrane conductance regulator ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:10925568 PMID:12874665 PMID:15905293 PMID:17539902 PMID:25580864 More... NCBI chrNW_004936589:1,565,933...1,719,208 JBrowse link
G Chek1 checkpoint kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25688741 NCBI chrNW_004936743:2,004,535...2,027,287
Ensembl chrNW_004936743:2,005,851...2,026,587
JBrowse link
G Chek2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor ClinVar PMID:10617473 PMID:11053450 PMID:11479205 PMID:11719428 PMID:11967536 More... NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180
JBrowse link
G Cldn1 claudin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19579870 PMID:24014025 NCBI chrNW_004936578:98,489...113,125
Ensembl chrNW_004936578:98,273...113,153
JBrowse link
G Cldn4 claudin 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19142967 NCBI chrNW_004936543:2,984,797...2,986,563
Ensembl chrNW_004936543:2,984,996...2,985,625
JBrowse link
G Clic1 chloride intracellular channel 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004936727:1,797,966...1,803,401
Ensembl chrNW_004936727:1,797,966...1,803,401
JBrowse link
G Clu clusterin treatment
severity
ISO RGD PMID:17203891 PMID:22613415 RGD:8729187 RGD:8764690 NCBI chrNW_004936675:499,745...513,515
Ensembl chrNW_004936675:499,199...513,836
JBrowse link
G Clul1 clusterin like 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936550:48,382...90,936
Ensembl chrNW_004936550:47,849...79,859
JBrowse link
G Cmc2 C-X9-C motif containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004936475:28,657,623...28,682,947
Ensembl chrNW_004936475:28,657,630...28,682,932
JBrowse link
G Cnr2 cannabinoid receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16818634 NCBI chrNW_004936474:9,019,044...9,020,110
Ensembl chrNW_004936474:9,019,067...9,020,110
JBrowse link
G Col7a1 collagen type VII alpha 1 chain ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004936529:348,938...381,701 JBrowse link
G Comt catechol-O-methyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:9407957 PMID:15455371 PMID:16077979 NCBI chrNW_004936619:3,847,059...3,883,866
Ensembl chrNW_004936619:3,876,299...3,882,747
JBrowse link
G Cotl1 coactosin like F-actin binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004936641:3,422,734...3,458,830
Ensembl chrNW_004936641:3,423,144...3,455,432
JBrowse link
G Cpt1a carnitine palmitoyltransferase 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004936599:1,491,934...1,535,101
Ensembl chrNW_004936599:1,482,172...1,535,119
JBrowse link
G Crhr1 corticotropin releasing hormone receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936541:2,288,847...2,333,129
Ensembl chrNW_004936541:2,288,841...2,331,689
JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein ISO RGD PMID:16391854 RGD:7488899 NCBI chrNW_004936619:2,447,686...2,479,589
Ensembl chrNW_004936619:2,447,614...2,479,805
JBrowse link
G Csf1 colony stimulating factor 1 ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:16618760 RGD:2293640 NCBI chrNW_004936704:1,372,137...1,393,355
Ensembl chrNW_004936704:1,378,103...1,393,542
JBrowse link
G Csf1r colony stimulating factor 1 receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16618760 NCBI chrNW_004936504:4,898,947...4,927,195
Ensembl chrNW_004936504:4,898,945...4,928,923
JBrowse link
G Csf2 colony stimulating factor 2 ISO CTD Direct Evidence: therapeutic CTD PMID:11325840 NCBI chrNW_004936647:3,081,896...3,083,864
Ensembl chrNW_004936647:3,081,896...3,083,864
JBrowse link
G Csf3 colony stimulating factor 3 ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:7541186 PMID:7543699 PMID:7692001 PMID:9018096 PMID:12926135 More... NCBI chrNW_004936490:15,142,526...15,146,375
Ensembl chrNW_004936490:15,142,808...15,144,487
JBrowse link
G Cst6 cystatin E/M ISO CTD Direct Evidence: marker/mechanism CTD PMID:17043665 NCBI chrNW_004936599:3,541,359...3,543,206
Ensembl chrNW_004936599:3,541,272...3,543,418
JBrowse link
G Ctnna1 catenin alpha 1 ISO protein:decreased expression:breast
protein:increased expression:breast
RGD PMID:11431364 PMID:17223851 RGD:2289792 RGD:2289796 NCBI chrNW_004936531:7,865,907...8,036,020
Ensembl chrNW_004936531:7,865,820...8,037,935
JBrowse link
G Ctnnb1 catenin beta 1 disease_progression ISO protein:decreased expression:breast
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:12165863 PMID:16707478 PMID:17223851 PMID:25330770 RGD:2289792 RGD:2289831 NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293
JBrowse link
G Ctu1 cytosolic thiouridylase subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004936889:728,956...735,692
Ensembl chrNW_004936889:728,362...733,141
JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004936641:980,493...986,015
Ensembl chrNW_004936641:980,533...984,506
JBrowse link
G Cul5 cullin 5 ISO CTD Direct Evidence: therapeutic CTD PMID:20949323 NCBI chrNW_004936551:641,469...724,706
Ensembl chrNW_004936551:641,463...724,711
JBrowse link
G CUNH11orf65 chromosome unknown C11orf65 homolog ISO ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor ClinVar PMID:6504056 PMID:7792600 PMID:8755918 PMID:8797579 PMID:8808599 More... NCBI chrNW_004936551:305,617...343,369
Ensembl chrNW_004936551:305,611...351,063
JBrowse link
G Cxcl12 C-X-C motif chemokine ligand 12 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18521742 NCBI chrNW_004936617:4,224,131...4,239,080
Ensembl chrNW_004936617:4,224,131...4,238,796
JBrowse link
G Cxcl9 C-X-C motif chemokine ligand 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chrNW_004936676:33,580...40,323
Ensembl chrNW_004936676:32,128...40,329
JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25753200 NCBI chrNW_004936469:39,794,613...39,798,448
Ensembl chrNW_004936469:39,794,584...39,798,459
JBrowse link
G Dap3 death associated protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936580:4,996,703...5,032,203
Ensembl chrNW_004936580:4,997,969...5,031,956
JBrowse link
G Ddit3 DNA damage inducible transcript 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14604972 NCBI chrNW_004936646:1,665,019...1,669,212 JBrowse link
G Dek DEK proto-oncogene ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004936552:3,964,515...3,997,318
Ensembl chrNW_004936552:3,966,198...3,993,113
JBrowse link
G Depp1 DEPP autophagy regulator 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936617:4,740,073...4,743,610
Ensembl chrNW_004936617:4,740,103...4,740,741
JBrowse link
G Des desmin ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chrNW_004936569:1,807,902...1,814,936
Ensembl chrNW_004936569:1,807,805...1,815,562
JBrowse link
G Dhfr dihydrofolate reductase ISO CTD Direct Evidence: marker/mechanism CTD PMID:21501481 PMID:28188287 NCBI chrNW_004936469:67,962...83,116 JBrowse link
G Dicer1 dicer 1, ribonuclease III ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:21266384 PMID:24728327 PMID:25741868 PMID:26467025 PMID:28492532 More... NCBI chrNW_004936846:528,768...584,599
Ensembl chrNW_004936846:532,972...575,689
JBrowse link
G Dio3 iodothyronine deiodinase 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chrNW_004936604:5,241,877...5,243,910 JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18283316 NCBI chrNW_004936787:307,290...309,963
Ensembl chrNW_004936787:306,941...310,166
JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004937098:212,704...220,589
Ensembl chrNW_004937098:213,227...220,427
JBrowse link
G Dll4 delta like canonical Notch ligand 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004936471:4,320,235...4,330,251
Ensembl chrNW_004936471:4,320,933...4,330,253
JBrowse link
G Dnmt1 DNA methyltransferase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22520950 PMID:28544374 NCBI chrNW_004936659:520,181...565,496
Ensembl chrNW_004936659:520,493...565,416
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:22520950 NCBI chrNW_004936493:6,963,406...7,013,256
Ensembl chrNW_004936493:6,935,386...7,007,610
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:18221536 PMID:22520950 NCBI chrNW_004936485:19,547,836...19,570,716 JBrowse link
G Dpyd dihydropyrimidine dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:19020767 NCBI chrNW_004936537:1,660,461...2,439,305
Ensembl chrNW_004936537:1,660,477...2,439,273
JBrowse link
G Dsc3 desmocollin 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16799634 NCBI chrNW_004936682:2,126,394...2,161,672
Ensembl chrNW_004936682:2,057,190...2,164,429
JBrowse link
G Dtx3 deltex E3 ubiquitin ligase 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004936646:1,749,061...1,754,399
Ensembl chrNW_004936646:1,751,387...1,754,353
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chrNW_004936551:4,584,438...4,913,829
Ensembl chrNW_004936551:4,584,438...4,913,825
JBrowse link
G E2f1 E2F transcription factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14672398 NCBI chrNW_004936561:6,894,827...6,901,058
Ensembl chrNW_004936561:6,896,063...6,900,026
JBrowse link
G Ednrb endothelin receptor type B ISO CTD Direct Evidence: therapeutic CTD PMID:16244791 NCBI chrNW_004936511:3,446,864...3,478,434
Ensembl chrNW_004936511:3,446,839...3,478,434
JBrowse link
G Eef1b2 eukaryotic translation elongation factor 1 beta 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004936631:2,539,075...2,542,252
Ensembl chrNW_004936631:2,539,070...2,542,419
JBrowse link
G Eef2 eukaryotic translation elongation factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004936588:2,259,236...2,267,692
Ensembl chrNW_004936588:2,258,309...2,266,609
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19115204 NCBI chrNW_004936491:2,159,654...2,214,480
Ensembl chrNW_004936491:2,159,096...2,214,677
JBrowse link
G Efna1 ephrin A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20154726 NCBI chrNW_004936580:4,654,503...4,660,950
Ensembl chrNW_004936580:4,654,503...4,660,966
JBrowse link
G Egf epidermal growth factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16175315 PMID:21942447 PMID:23064031 NCBI chrNW_004936563:1,058,803...1,181,393 JBrowse link
G Egfr epidermal growth factor receptor disease_progression ISO CTD Direct Evidence: marker/mechanism
mRNA:increased expression:lung, tumor (mouse)
CTD
RGD
PMID:16950593 PMID:18768436 PMID:19075277 PMID:20135347 PMID:20941507 More... RGD:5037225 NCBI chrNW_004936678:365,005...560,546
Ensembl chrNW_004936678:365,834...436,528
JBrowse link
G Eif2s2 eukaryotic translation initiation factor 2 subunit beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004936561:6,529,204...6,548,126
Ensembl chrNW_004936561:6,529,162...6,549,714
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004936561:5,471,113...5,477,679
Ensembl chrNW_004936561:5,471,102...5,477,813
JBrowse link
G Elk3 ETS transcription factor ELK3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16583263 NCBI chrNW_004936507:12,244,163...12,307,621
Ensembl chrNW_004936507:12,244,163...12,307,623
JBrowse link
G Elp1 elongator acetyltransferase complex subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004936559:3,924,185...3,981,907
Ensembl chrNW_004936559:3,924,185...3,983,028
JBrowse link
G Elp3 elongator acetyltransferase complex subunit 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004936675:933,698...1,014,919
Ensembl chrNW_004936675:933,676...1,016,242
JBrowse link
G Emsy EMSY transcriptional repressor, BRCA2 interacting ISO CTD Direct Evidence: marker/mechanism CTD PMID:19636701 NCBI chrNW_004936498:5,130,503...5,213,341
Ensembl chrNW_004936498:5,130,470...5,213,919
JBrowse link
G Eng endoglin treatment ISO RGD PMID:21431419 RGD:7257526 NCBI chrNW_004936487:15,467,165...15,499,180
Ensembl chrNW_004936487:15,467,835...15,477,488
JBrowse link
G Eno1 enolase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19655245 NCBI chrNW_004936623:3,115,357...3,130,289
Ensembl chrNW_004936623:3,115,081...3,128,183
JBrowse link
G Ep300 E1A binding protein p300 ISO CTD Direct Evidence: marker/mechanism CTD PMID:26229107 NCBI chrNW_004936492:696,982...778,132
Ensembl chrNW_004936492:696,960...778,138
JBrowse link
G Epb41l3 erythrocyte membrane protein band 4.1 like 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17260099 NCBI chrNW_004936779:962,696...1,106,452
Ensembl chrNW_004936779:1,016,265...1,104,070
JBrowse link
G Ephb4 EPH receptor B4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23063927 NCBI chrNW_004936543:794,837...811,637
Ensembl chrNW_004936543:794,725...811,637
JBrowse link
G Epor erythropoietin receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:19706814 NCBI chrNW_004936659:1,468,391...1,473,880
Ensembl chrNW_004936659:1,468,634...1,473,880
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 disease_progression
treatment
ISO mRNA:increased expression:blood
ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm
RGD
ClinVar
PMID:15753357 PMID:16397024 PMID:16609042 PMID:16863509 PMID:16988931 More... RGD:10401078 RGD:2289921 NCBI chrNW_004936490:14,887,062...14,910,038
Ensembl chrNW_004936490:14,887,043...14,909,956
JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 disease_progression ISO DNA:amplification
ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm
RGD
ClinVar
PMID:18182100 PMID:26619011 RGD:2289942 NCBI chrNW_004936646:497,783...515,247
Ensembl chrNW_004936646:498,749...513,297
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 susceptibility
disease_progression
ISO mRNA:increased expression:breast
DNA:polymorphism:promoter:-782G>T (human)
DNA:amplification
RGD PMID:17465220 PMID:18094435 PMID:18182100 RGD:2289942 RGD:2289949 RGD:2289977 NCBI chrNW_004936586:4,065,767...5,100,690
Ensembl chrNW_004936586:4,066,498...5,100,035
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit disease_progression ISO DNA:SNP:exon:p.K751Q (rs13181) (human) RGD PMID:19307510 RGD:11340203 NCBI chrNW_004936706:1,816,561...1,829,638
Ensembl chrNW_004936706:1,816,571...1,829,692
JBrowse link
G Esr1 estrogen receptor 1 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:24185510 PMID:24185512 PMID:24398047 NCBI chrNW_004936489:4,616,839...4,887,179
Ensembl chrNW_004936489:4,614,754...4,887,171
JBrowse link
G Esr2 estrogen receptor 2 treatment
disease_progression
ISO mRNA, protein:increased expression:breast
CTD Direct Evidence: marker/mechanism|therapeutic
RGD
CTD
PMID:17132221 PMID:18234277 PMID:19434490 PMID:19548127 PMID:24047421 RGD:2290017 RGD:8552984 NCBI chrNW_004936495:7,956,168...8,018,356
Ensembl chrNW_004936495:7,956,766...8,004,357
JBrowse link
G Esrra estrogen related receptor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:20961995 NCBI chrNW_004936599:4,898,534...4,922,758
Ensembl chrNW_004936599:4,897,066...4,904,886
JBrowse link
G Ets2 ETS proto-oncogene 2, transcription factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936500:4,244,706...4,257,223
Ensembl chrNW_004936500:4,244,604...4,257,265
JBrowse link
G Etv4 ETS variant transcription factor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21679465 NCBI chrNW_004936541:120,533...138,463
Ensembl chrNW_004936541:123,049...139,256
JBrowse link
G Evl Enah/Vasp-like ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004936604:3,720,038...3,819,928
Ensembl chrNW_004936604:3,719,976...3,822,334
JBrowse link
G Exo1 exonuclease 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25751625 NCBI chrNW_004936526:8,570,488...8,627,004 JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:21903722 NCBI chrNW_004936527:5,024,077...5,069,152
Ensembl chrNW_004936527:5,024,068...5,063,939
JBrowse link
G F3 coagulation factor III, tissue factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:15562024 NCBI chrNW_004936537:4,637,028...4,647,915
Ensembl chrNW_004936537:4,636,667...4,647,916
JBrowse link
G Fabp7 fatty acid binding protein 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22322885 NCBI chrNW_004936802:1,092,448...1,096,293
Ensembl chrNW_004936802:1,092,404...1,101,672
JBrowse link
G Faslg Fas ligand susceptibility ISO DNA:polymorphism:promoter:-844T>C
protein:increased expression:breast
RGD PMID:10640988 PMID:17183065 RGD:2290054 RGD:2290134 NCBI chrNW_004936481:14,789,547...14,795,780 JBrowse link
G Fasn fatty acid synthase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17089011 PMID:18281512 NCBI chrNW_004936594:5,591,785...5,609,886
Ensembl chrNW_004936594:5,592,609...5,608,972
JBrowse link
G Fbl fibrillarin ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936661:2,444,985...2,455,423
Ensembl chrNW_004936661:2,444,866...2,455,528
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast tumor ClinVar PMID:26619011 NCBI chrNW_004936689:2,261,163...2,449,951
Ensembl chrNW_004936689:2,259,477...2,344,764
JBrowse link
G Fgd5 FYVE, RhoGEF and PH domain containing 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004936602:432,114...483,964
Ensembl chrNW_004936602:436,058...482,370
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18438407 NCBI chrNW_004936480:18,114,231...18,195,884
Ensembl chrNW_004936480:18,114,204...18,195,898
JBrowse link
G Fgf3 fibroblast growth factor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21936542 NCBI chrNW_004936599:868,634...875,464
Ensembl chrNW_004936599:868,634...875,464
JBrowse link
G Fgf4 fibroblast growth factor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21936542 NCBI chrNW_004936599:894,091...895,676 JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20179196 PMID:21936542 NCBI chrNW_004936710:1,760,365...1,815,269
Ensembl chrNW_004936710:1,760,089...1,815,508
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:17525745 PMID:18552176 PMID:22238366 PMID:23002168 PMID:23908597 More... NCBI chrNW_004936486:10,506,680...10,606,272
Ensembl chrNW_004936486:10,507,097...10,602,019
JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:19946327 NCBI chrNW_004936597:1,388,394...1,397,731
Ensembl chrNW_004936597:1,385,624...1,397,758
JBrowse link
G Fhit fragile histidine triad diadenosine triphosphatase severity ISO protein:decreased expression:breast:frequency increases from 0% in nonproliferative benign breast disease to 41% in invasive carcinoma
lobular breast cancer; DNA:loss of heterozygosity::LOH within the FHIT gene in 16% of cases, significant association between LOH and reduced or negative expression
RGD PMID:10930803 PMID:17164758 RGD:2289872 RGD:2289898 NCBI chrNW_004936473:397,140...1,424,805
Ensembl chrNW_004936473:676,237...1,424,506
JBrowse link
G Fhl2 four and a half LIM domains 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17682292 NCBI chrNW_004936764:613,863...656,220
Ensembl chrNW_004936764:613,193...656,224
JBrowse link
G Fkbpl FKBP prolyl isomerase like ISO CTD Direct Evidence: therapeutic CTD PMID:20103631 NCBI chrNW_004936727:1,474,052...1,475,602
Ensembl chrNW_004936727:1,474,533...1,475,582
JBrowse link
G Flacc1 flagellum associated containing coiled-coil domains 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936726:600,213...631,513
Ensembl chrNW_004936726:600,420...625,853
JBrowse link
G Flna filamin A ISO CTD Direct Evidence: marker/mechanism CTD PMID:26437033 NCBI chrNW_004936809:1,097,288...1,123,206
Ensembl chrNW_004936809:1,097,294...1,123,201
JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 severity ISO protein:increased expression, alternative form:tumor:increased expression of soluble form, significantly correlated with VEGF expression
CTD Direct Evidence: marker/mechanism
protein:altered expression:tumor:positive expression improves survival rate after neoadjuvant chemotherapy, negative expression associated with poor prognosis
RGD
CTD
PMID:11857378 PMID:12910290 PMID:23146280 PMID:26124351 RGD:2289961 RGD:2289962 NCBI chrNW_004936472:23,442,946...23,617,523
Ensembl chrNW_004936472:23,440,088...23,617,041
JBrowse link
G Fn1 fibronectin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24014025 NCBI chrNW_004936586:1,708,803...1,773,372
Ensembl chrNW_004936586:1,708,684...1,773,383
JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936488:4,384,710...4,388,118
Ensembl chrNW_004936488:4,384,705...4,388,122
JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit ISO mRNA, protein:increased expression:breast RGD PMID:17254320 RGD:2293756 NCBI chrNW_004936599:3,642,504...3,649,294
Ensembl chrNW_004936599:3,642,504...3,648,417
JBrowse link
G Foxa1 forkhead box A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23001124 NCBI chrNW_004936494:11,529,546...11,535,224
Ensembl chrNW_004936494:11,529,546...11,535,224
JBrowse link
G Foxm1 forkhead box M1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20208560 NCBI chrNW_004936606:3,185,289...3,198,427
Ensembl chrNW_004936606:3,185,982...3,198,378
JBrowse link
G Foxp3 forkhead box P3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17570480 NCBI chrNW_004936721:1,118,376...1,125,282
Ensembl chrNW_004936721:1,118,782...1,132,308
JBrowse link
G Foxq1 forkhead box Q1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27129776 NCBI chrNW_004936633:2,458,473...2,460,990
Ensembl chrNW_004936633:2,459,047...2,460,260
JBrowse link
G Fst follistatin ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936480:13,990,967...13,997,248
Ensembl chrNW_004936480:13,990,929...13,997,248
JBrowse link
G Fto FTO alpha-ketoglutarate dependent dioxygenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23535733 NCBI chrNW_004936475:6,321,725...6,689,410
Ensembl chrNW_004936475:6,321,711...6,689,588
JBrowse link
G Galnt12 polypeptide N-acetylgalactosaminyltransferase 12 ISO ClinVar Annotator: match by term: Breast tumor ClinVar PMID:25741868 PMID:28492532 PMID:29546405 NCBI chrNW_004936524:7,379,381...7,410,136
Ensembl chrNW_004936524:7,379,305...7,410,376
JBrowse link
G Galnt16 polypeptide N-acetylgalactosaminyltransferase 16 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936495:12,496,743...12,583,905
Ensembl chrNW_004936495:12,497,794...12,583,882
JBrowse link
G Gen1 GEN1 Holliday junction 5' flap endonuclease ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004936493:13,157,114...13,182,797
Ensembl chrNW_004936493:13,157,119...13,177,525
JBrowse link
G Gja1 gap junction protein alpha 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29180066 NCBI chrNW_004936658:3,920,043...3,932,987
Ensembl chrNW_004936658:3,920,043...3,932,987
JBrowse link
G Gnai2 G protein subunit alpha i2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chrNW_004936529:1,779,582...1,801,251
Ensembl chrNW_004936529:1,779,571...1,801,255
JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24440569 NCBI chrNW_004936754:1,288,891...1,293,555
Ensembl chrNW_004936754:1,288,912...1,293,427
JBrowse link
G Gpi glucose-6-phosphate isomerase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004936570:1,582,120...1,608,537
Ensembl chrNW_004936570:1,579,372...1,608,788
JBrowse link
G Gpnmb glycoprotein nmb ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004936478:397,200...425,663
Ensembl chrNW_004936478:397,145...424,801
JBrowse link
G Gpx1 glutathione peroxidase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12810669 NCBI chrNW_004936529:997,943...999,123
Ensembl chrNW_004936529:998,150...998,987
JBrowse link
G Gpx2 glutathione peroxidase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18056462 NCBI chrNW_004936495:8,590,225...8,593,511
Ensembl chrNW_004936495:8,590,556...8,593,367
JBrowse link
G Gpx4 glutathione peroxidase 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17634480 NCBI chrNW_004936588:506,101...508,469
Ensembl chrNW_004936588:506,147...508,101
JBrowse link
G Grb7 growth factor receptor bound protein 7 ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:17426702 PMID:19075277 NCBI chrNW_004936490:14,912,010...14,925,380
Ensembl chrNW_004936490:14,917,372...14,925,337
JBrowse link
G Grik2 glutamate ionotropic receptor kainate type subunit 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chrNW_004936651:2,756,559...3,401,806
Ensembl chrNW_004936651:2,762,380...3,401,808
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:35639300 NCBI chrNW_004936536:6,730,070...6,893,818
Ensembl chrNW_004936536:6,730,062...6,894,303
JBrowse link
G Gstp1 glutathione S-transferase pi 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25322848 NCBI chrNW_004936599:2,197,681...2,200,642
Ensembl chrNW_004936599:2,197,634...2,201,050
JBrowse link
G Gucy1a2 guanylate cyclase 1 soluble subunit alpha 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004936551:1,573,930...1,814,685
Ensembl chrNW_004936551:1,575,356...1,814,697
JBrowse link
G H1-2 H1.2 linker histone, cluster member ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004936671:1,907,356...1,911,821
Ensembl chrNW_004936671:1,907,321...1,911,851
JBrowse link
G H6pd hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:29295867 NCBI chrNW_004936623:3,359,624...3,376,598
Ensembl chrNW_004936623:3,351,716...3,375,146
JBrowse link
G Hadhb hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936493:6,139,717...6,182,792
Ensembl chrNW_004936493:6,137,970...6,182,792
JBrowse link
G Hapln4 hyaluronan and proteoglycan link protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936596:2,175,414...2,181,825
Ensembl chrNW_004936596:2,175,361...2,182,799
JBrowse link
G Herc2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:16397024 PMID:23220880 NCBI chrNW_004936471:38,419,147...38,606,312
Ensembl chrNW_004936471:38,419,129...38,606,323
JBrowse link
G Hes1 hes family bHLH transcription factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20197467 PMID:21036696 NCBI chrNW_004936711:640,002...642,580
Ensembl chrNW_004936711:639,905...642,622
JBrowse link
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004936871:666,961...670,910
Ensembl chrNW_004936871:666,938...670,916
JBrowse link
G Hey2 hes related family bHLH transcription factor with YRPW motif 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004936639:3,705,225...3,714,696
Ensembl chrNW_004936639:3,703,447...3,716,820
JBrowse link
G Heyl hes related family bHLH transcription factor with YRPW motif like ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004936474:21,503,763...21,513,392
Ensembl chrNW_004936474:21,505,149...21,510,624
JBrowse link
G Hhex hematopoietically expressed homeobox ISO CTD Direct Evidence: marker/mechanism CTD PMID:16854221 NCBI chrNW_004936601:2,137,490...2,143,797
Ensembl chrNW_004936601:2,136,873...2,143,857
JBrowse link
G Hic1 HIC ZBTB transcriptional repressor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20154726 NCBI chrNW_004936538:8,122,557...8,126,157
Ensembl chrNW_004936538:8,122,749...8,125,306
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha disease_progression ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:17245699 PMID:19064988 PMID:24349381 RGD:2293195 RGD:2306224 NCBI chrNW_004936495:5,770,988...5,816,157
Ensembl chrNW_004936495:5,770,669...5,816,157
JBrowse link
G Hmmr hyaluronan mediated motility receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:17922014 NCBI chrNW_004936515:570,112...599,400
Ensembl chrNW_004936515:571,139...600,132
JBrowse link
G Hmox1 heme oxygenase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936492:5,042,353...5,049,216
Ensembl chrNW_004936492:5,042,330...5,049,311
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936828:827,660...839,088
Ensembl chrNW_004936828:828,837...838,720
JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936661:1,793,791...1,806,564
Ensembl chrNW_004936661:1,793,801...1,806,579
JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936474:8,531,434...8,567,734
Ensembl chrNW_004936474:8,531,434...8,567,767
JBrowse link
G Hoxb13 homeobox B13 disease_progression ISO DNA:hypermethylation
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:17453342 PMID:19250546 PMID:24239177 RGD:2314726 RGD:2314727 NCBI chrNW_004936490:12,688,572...12,690,908
Ensembl chrNW_004936490:12,688,559...12,690,908
JBrowse link
G Hoxb9 homeobox B9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27182052 NCBI chrNW_004936490:12,761,668...12,765,658
Ensembl chrNW_004936490:12,761,522...12,766,657
JBrowse link
G Hpse heparanase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16391819 NCBI chrNW_004936738:1,308,350...1,341,421
Ensembl chrNW_004936738:1,308,345...1,343,145
JBrowse link
G Hras HRas proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:1904555 PMID:2105486 PMID:3510078 PMID:11150980 PMID:12727991 More... NCBI chrNW_004936888:375,372...378,125
Ensembl chrNW_004936888:375,377...377,958
JBrowse link
G Hrg histidine rich glycoprotein ISO CTD Direct Evidence: marker/mechanism CTD PMID:19552798 NCBI chrNW_004936578:3,285,986...3,295,876
Ensembl chrNW_004936578:3,285,986...3,295,876
JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004936835:316,767...321,999
Ensembl chrNW_004936835:316,767...321,990
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 ISO protein:increased expression RGD PMID:20957756 RGD:5686342 NCBI chrNW_004936487:13,348,465...13,352,717
Ensembl chrNW_004936487:13,348,465...13,352,717
JBrowse link
G Ibsp integrin binding sialoprotein ISO CTD Direct Evidence: marker/mechanism CTD PMID:24980816 NCBI chrNW_004936905:316,459...323,446
Ensembl chrNW_004936905:316,459...323,446
JBrowse link
G Icam5 intercellular adhesion molecule 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004936659:630,177...636,586
Ensembl chrNW_004936659:630,235...636,425
JBrowse link
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:18772396 PMID:19657110 PMID:19798509 PMID:19818334 PMID:20946881 More... NCBI chrNW_004936950:334,894...349,221
Ensembl chrNW_004936950:334,934...348,363
JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chrNW_004936843:658,058...672,662
Ensembl chrNW_004936843:657,979...672,700
JBrowse link
G Ifnb1 interferon beta 1 ISO CTD Direct Evidence: therapeutic CTD PMID:18608205 NCBI chrNW_004936652:2,736,270...2,736,833 JBrowse link
G Ifng interferon gamma ISO CTD Direct Evidence: marker/mechanism CTD PMID:19446661 NCBI chrNW_004936545:6,139,130...6,144,543
Ensembl chrNW_004936545:6,139,116...6,148,452
JBrowse link
G Igbp1 immunoglobulin binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21339737 NCBI chrNW_004936762:1,292,572...1,319,145 JBrowse link
G Igf1 insulin like growth factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17520698 PMID:18398872 NCBI chrNW_004936492:11,709,623...11,784,028
Ensembl chrNW_004936492:11,709,222...11,778,351
JBrowse link
G Igf1r insulin like growth factor 1 receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:21057462 NCBI chrNW_004936483:4,563,995...4,860,231
Ensembl chrNW_004936483:4,564,512...4,852,925
JBrowse link
G Igfbp5 insulin like growth factor binding protein 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20354179 NCBI chrNW_004936586:647,553...666,595
Ensembl chrNW_004936586:647,493...666,621
JBrowse link
G Igfbp7 insulin like growth factor binding protein 7 ISO CTD Direct Evidence: therapeutic CTD PMID:12592389 NCBI chrNW_004936482:19,119,339...19,186,679
Ensembl chrNW_004936482:19,118,321...19,186,685
JBrowse link
G Il10 interleukin 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29582634 NCBI chrNW_004936557:5,834,874...5,838,502
Ensembl chrNW_004936557:5,834,874...5,838,502
JBrowse link
G Il13 interleukin 13 susceptibility
treatment
ISO DNA:SNPs, haplotypes:promoter, exon:-1512A>C, -1055C>T, 2044G>A (human) RGD PMID:17438063 PMID:18989750 RGD:8549503 RGD:8549557 NCBI chrNW_004936647:2,529,933...2,532,503
Ensembl chrNW_004936647:2,530,491...2,532,373
JBrowse link
G Il17a interleukin 17A treatment ISO associated with Arthritis, Experimental RGD PMID:24674692 RGD:9068440 NCBI chrNW_004936476:8,621,860...8,625,008
Ensembl chrNW_004936476:8,621,860...8,625,008
JBrowse link
G Il1b interleukin 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17516992 PMID:28212736 NCBI chrNW_004936783:1,251,678...1,256,807
Ensembl chrNW_004936783:1,252,158...1,257,165
JBrowse link
G Il2 interleukin 2 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar NCBI chrNW_004936662:1,594,953...1,599,625
Ensembl chrNW_004936662:1,594,953...1,599,625
JBrowse link
G Il24 interleukin 24 ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:16298037 PMID:21671747 NCBI chrNW_004936557:5,719,592...5,727,113
Ensembl chrNW_004936557:5,719,592...5,727,113
JBrowse link
G Il6 interleukin 6 susceptibility ISO associated with obesity;DNA:polymorphism:promoter:-174G>C(human)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:11426023 PMID:16298037 PMID:17516992 PMID:19435922 PMID:19446661 RGD:7829718 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
G Il7r interleukin 7 receptor ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar NCBI chrNW_004936518:5,815,820...5,842,571 JBrowse link
G Itsn2 intersectin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chrNW_004936493:7,716,424...7,842,818
Ensembl chrNW_004936493:7,738,630...7,842,814
JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004936485:8,857,688...8,894,270
Ensembl chrNW_004936485:8,857,669...8,895,315
JBrowse link
G Jag2 jagged canonical Notch ligand 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004936621:363,489...380,616
Ensembl chrNW_004936621:366,616...380,618
JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase ISO CTD Direct Evidence: marker/mechanism CTD PMID:30619488 NCBI chrNW_004936594:1,760,924...1,771,022
Ensembl chrNW_004936594:1,760,853...1,770,765
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar NCBI chrNW_004936522:3,034,364...3,037,632
Ensembl chrNW_004936522:3,035,346...3,036,350
JBrowse link
G Jup junction plakoglobin severity
no_association
ISO DNA:loss of heterozygosity:tumor:in individuals carrying the BRCA1 predisposition
protein:increased expression:tumor, cell membrane:significantly associated with relapse-free and overall survival (p=0.029 and 0.020, respectively)
Protein::tumor:normal expression in both T1 and T2 tumors
RGD PMID:7604000 PMID:11276001 PMID:17008277 RGD:2291873 RGD:2291881 RGD:2291883 NCBI chrNW_004936490:16,671,176...16,694,552
Ensembl chrNW_004936490:16,668,575...16,694,615
JBrowse link
G Kat6a lysine acetyltransferase 6A severity ISO mRNA:increased expression:breast (human) RGD PMID:25220592 RGD:9590335 NCBI chrNW_004936785:602,754...704,504
Ensembl chrNW_004936785:603,478...701,791
JBrowse link
G Kcnh1 potassium voltage-gated channel subfamily H member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17520698 NCBI chrNW_004936557:2,133,596...2,493,170
Ensembl chrNW_004936557:2,133,564...2,493,155
JBrowse link
G Kdm4c lysine demethylase 4C severity ISO human gene in a mouse model
mRNA:increased expression:breast (human)
RGD PMID:19784073 PMID:23129632 RGD:9587479 RGD:9587482 NCBI chrNW_004936539:1,198,105...1,580,078
Ensembl chrNW_004936539:1,198,147...1,580,082
JBrowse link
G Kdm5b lysine demethylase 5B severity ISO mRNA:increased expression:breast (human) RGD PMID:10336460 RGD:9587743 NCBI chrNW_004936567:1,782,056...1,860,861
Ensembl chrNW_004936567:1,781,995...1,863,461
JBrowse link
G Kdr kinase insert domain receptor treatment ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:14511401 PMID:20135347 PMID:35917945 RGD:8551844 NCBI chrNW_004936482:17,537,697...17,581,320
Ensembl chrNW_004936482:17,538,864...17,581,002
JBrowse link
G Kiss1 KiSS-1 metastasis suppressor disease_progression
severity
ISO mRNA, protein:increased expression:tumor:higher in tumor vs normal tissue, significantly higher in node-positive vs node-negative (p=0.02)
mRNA:increased expression:tumor:high levels of both KISS1 and KISS1R in ERalpha+ tumors treated with tamoxifen associated with shorter relapse-free survival
RGD PMID:16320113 PMID:17914099 RGD:2292123 RGD:2292135 NCBI chrNW_004936567:584,443...595,045
Ensembl chrNW_004936567:584,443...586,837
JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase disease_progression
severity
ISO protein:increased expression:tumor:significantly increased vs fibroadenoma (p=0.035)
protein:decreased expression:tumor:mean immunoreactive score = 5.90 in normal breast, 0.90 in malignant tissue (p=0.001)
CTD Direct Evidence: marker/mechanism
protein:expression:tumor:expression correlated with poor overall survival (p=0.051) and with high grade (p=0.019)
RGD
CTD
PMID:14669790 PMID:17848740 PMID:17867595 PMID:20941507 PMID:21388062 RGD:12910741 RGD:2292423 RGD:2292424 RGD:2292425 NCBI chrNW_004936482:17,162,854...17,238,319
Ensembl chrNW_004936482:17,162,950...17,238,274
JBrowse link
G Klhdc10 kelch domain containing 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936579:5,082,221...5,143,004
Ensembl chrNW_004936579:5,087,028...5,142,253
JBrowse link
G Klhdc7a kelch domain containing 7A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936474:4,938,609...4,940,971
Ensembl chrNW_004936474:4,938,688...4,945,431
JBrowse link
G Kmt2d lysine methyltransferase 2D ISO CTD Direct Evidence: marker/mechanism CTD PMID:26437033 NCBI chrNW_004936512:6,819,240...6,860,852
Ensembl chrNW_004936512:6,822,057...6,854,451
JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO CTD Direct Evidence: marker/mechanism
breast adenocarcinoma cell line, OMIM:114480 DNA:point_mutation:CDS:amino acid G13D
CTD
RGD
PMID:3627975 RGD:1600466 NCBI chrNW_004936548:2,078,568...2,113,877
Ensembl chrNW_004936548:2,079,036...2,110,523
JBrowse link
G Krt18 keratin 18 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20061804 PMID:25330770 NCBI chrNW_004936512:10,290,706...10,294,647
Ensembl chrNW_004936512:10,290,690...10,294,651
JBrowse link
G Krt5 keratin 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chrNW_004936512:9,923,593...9,929,517
Ensembl chrNW_004936512:9,922,523...9,929,517
JBrowse link
G Krt8 keratin 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20061804 NCBI chrNW_004936512:10,247,049...10,254,748
Ensembl chrNW_004936512:10,246,991...10,254,827
JBrowse link
G L3mbtl3 L3MBTL histone methyl-lysine binding protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936790:1,210,842...1,298,577
Ensembl chrNW_004936790:1,212,536...1,298,566
JBrowse link
G Lamtor5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:26229107 NCBI chrNW_004936704:1,830,470...1,835,966
Ensembl chrNW_004936704:1,830,470...1,835,994
JBrowse link
G Lbx1 ladybird homeobox 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19651985 NCBI chrNW_004936600:4,505,280...4,507,934
Ensembl chrNW_004936600:4,504,024...4,507,934
JBrowse link
G Ldhal6b lactate dehydrogenase A like 6B ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004936489:9,281,228...9,283,132 JBrowse link
G Ldhb lactate dehydrogenase B ISO CTD Direct Evidence: marker/mechanism CTD PMID:23437403 NCBI chrNW_004936548:5,224,905...5,244,708
Ensembl chrNW_004936548:5,227,666...5,244,525
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004936818:453,635...569,194
Ensembl chrNW_004936818:453,635...567,469
JBrowse link
G Lep leptin ISO CTD Direct Evidence: marker/mechanism CTD PMID:21353530 PMID:35191604 NCBI chrNW_004936479:15,394,966...15,411,334
Ensembl chrNW_004936479:15,394,966...15,411,334
JBrowse link
G Lepr leptin receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:21353530 NCBI chrNW_004936591:5,771,371...5,846,177
Ensembl chrNW_004936591:5,774,326...5,836,444
JBrowse link
G Lgr6 leucine rich repeat containing G protein-coupled receptor 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:23535733 NCBI chrNW_004936567:2,238,036...2,355,836
Ensembl chrNW_004936567:2,238,299...2,355,824
JBrowse link
G Limd2 LIM domain containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chrNW_004936541:4,346,633...4,348,367
Ensembl chrNW_004936541:4,346,644...4,348,120
JBrowse link
G Llgl1 LLGL scribble cell polarity complex component 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936741:1,770,797...1,784,716
Ensembl chrNW_004936741:1,770,620...1,788,356
JBrowse link
G Llgl2 LLGL scribble cell polarity complex component 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 NCBI chrNW_004936594:754,140...792,493
Ensembl chrNW_004936594:765,310...792,155
JBrowse link
G LOC101954950 aromatase ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 PMID:19639193 PMID:23342035 PMID:28112739 PMID:29701941 More... NCBI chrNW_004936471:13,107,603...13,136,910
Ensembl chrNW_004936471:13,107,603...13,136,910
JBrowse link
G LOC101955831 heat shock 70 kDa protein 1 ISO CTD Direct Evidence: therapeutic CTD PMID:15665820 NCBI chrNW_004936727:1,718,952...1,721,691 JBrowse link
G LOC101957714 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial ISO CTD Direct Evidence: marker/mechanism CTD PMID:16280049 NCBI chrNW_004936514:1,467,460...1,480,185
Ensembl chrNW_004936514:1,467,261...1,480,185
JBrowse link
G LOC101961588 cytochrome P450 2D17 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19597703 NCBI chrNW_004936718:153,340...157,966 JBrowse link
G LOC101964975 interleukin-8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17516992 NCBI chrNW_004936598:1,779,471...1,781,353
Ensembl chrNW_004936598:1,779,471...1,781,353
JBrowse link
G LOC101965998 notch receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004936872:454,273...539,544
Ensembl chrNW_004936872:390,852...536,321
JBrowse link
G LOC101966907 histone H2AX ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 PMID:21463514 NCBI chrNW_004936542:4,046,930...4,049,017
Ensembl chrNW_004936542:4,047,915...4,048,346
JBrowse link
G LOC101967592 putative serine protease 46 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936596:548,354...563,883 JBrowse link
G LOC101969148 cytochrome P450 1A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16792888 NCBI chrNW_004936471:33,682,730...33,688,332
Ensembl chrNW_004936471:33,682,730...33,688,332
JBrowse link
G LOC101970101 cytochrome P450 1B1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17297925 NCBI chrNW_004936663:345,021...355,188
Ensembl chrNW_004936663:348,368...355,191
JBrowse link
G LOC101970767 steroid 17-alpha-hydroxylase/17,20 lyase ISO CTD Direct Evidence: marker/mechanism CTD PMID:19913079 PMID:34426286 NCBI chrNW_004936600:3,097,620...3,102,713
Ensembl chrNW_004936600:3,097,638...3,102,713
JBrowse link
G LOC101971027 neuroendocrine secretory protein 55 ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:1517386 PMID:1594625 PMID:1944469 PMID:2549426 PMID:3720010 More... NCBI chrNW_004936530:1,353,432...1,407,437 JBrowse link
G LOC101974917 zinc finger protein 432 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004937026:214,385...237,983
Ensembl chrNW_004937026:228,210...241,723
JBrowse link
G LOC101976500 haptoglobin ISO CTD Direct Evidence: marker/mechanism CTD PMID:16597321 NCBI chrNW_004936475:21,841,054...21,845,821 JBrowse link
G LOC106145452 kallikrein-10 severity ISO DNA:hypermethylation:exon (human)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:12087468 PMID:16800735 PMID:17585892 PMID:19150938 RGD:2314845 RGD:2314847 RGD:2314850 NCBI chrNW_004936889:663,114...666,067
Ensembl chrNW_004936889:663,573...667,519
JBrowse link
G Loxl2 lysyl oxidase like 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19330836 PMID:24014025 NCBI chrNW_004936555:6,781,563...6,865,662
Ensembl chrNW_004936555:6,781,321...6,865,768
JBrowse link
G Lpar1 lysophosphatidic acid receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936559:2,187,791...2,331,587
Ensembl chrNW_004936559:2,259,420...2,332,806
JBrowse link
G Lrrc3b leucine rich repeat containing 3B ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936473:17,952,525...18,038,537
Ensembl chrNW_004936473:17,952,887...18,037,619
JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:1904555 PMID:2105486 PMID:3510078 PMID:11150980 PMID:12727991 More... NCBI chrNW_004936888:379,622...397,647
Ensembl chrNW_004936888:382,062...402,083
JBrowse link
G Lsp1 lymphocyte specific protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17529967 PMID:20453838 NCBI chrNW_004936816:752,021...786,998 JBrowse link
G Macir macrophage immunometabolism regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chrNW_004936523:1,273,812...1,292,837
Ensembl chrNW_004936523:1,275,214...1,292,854
JBrowse link
G Mad1l1 mitotic arrest deficient 1 like 1 ISO RGD PMID:11423979 RGD:1599865 NCBI chrNW_004936754:1,842,588...1,957,116 JBrowse link
G Mal mal, T cell differentiation protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:19208741 NCBI chrNW_004937185:62,807...68,205
Ensembl chrNW_004937185:63,274...68,187
JBrowse link
G Man2c1 mannosidase alpha class 2C member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936471:34,193,314...34,206,010
Ensembl chrNW_004936471:34,193,316...34,204,656
JBrowse link
G Map2k4 mitogen-activated protein kinase kinase 4 susceptibility ISO DNA:SNP, haplotype RGD PMID:19404734 RGD:7495825 NCBI chrNW_004936595:4,762,327...4,828,433
Ensembl chrNW_004936595:4,727,108...4,830,662
JBrowse link
G Map2k7 mitogen-activated protein kinase kinase 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21317887 NCBI chrNW_004936588:4,882,191...4,891,807
Ensembl chrNW_004936588:4,882,184...4,892,071
JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17529967 NCBI chrNW_004936480:11,082,811...11,156,691
Ensembl chrNW_004936480:11,083,605...11,156,691
JBrowse link
G Mcph1 microcephalin 1 severity ISO protein:decreased expression:breast (human) RGD PMID:20632086 RGD:9589027 NCBI chrNW_004936615:4,386,667...4,580,720
Ensembl chrNW_004936615:4,386,635...4,580,747
JBrowse link
G Mdm2 MDM2 proto-oncogene ISO CTD Direct Evidence: marker/mechanism CTD PMID:26229107 NCBI chrNW_004936545:6,709,903...6,732,334 JBrowse link
G Mdm4 MDM4 regulator of p53 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23535733 NCBI chrNW_004936567:268,151...299,494
Ensembl chrNW_004936567:268,151...299,494
JBrowse link
G Mecom MDS1 and EVI1 complex locus ISO CTD Direct Evidence: marker/mechanism CTD PMID:23770046 NCBI chrNW_004936593:2,742,236...3,282,596
Ensembl chrNW_004936593:3,106,202...3,282,596
JBrowse link
G Med12 mediator complex subunit 12 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:26619011 NCBI chrNW_004936762:460,342...483,264
Ensembl chrNW_004936762:460,342...483,195
JBrowse link
G Med28 mediator complex subunit 28 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21942447 NCBI chrNW_004936477:10,586,436...10,592,366 JBrowse link
G Meis1 Meis homeobox 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19776672 NCBI chrNW_004936491:11,079,574...11,216,451
Ensembl chrNW_004936491:11,079,455...11,217,388
JBrowse link
G Mettl6 methyltransferase 6, tRNA N3-cytidine ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004936473:2,963,591...2,984,827
Ensembl chrNW_004936473:2,963,466...2,985,634
JBrowse link
G Mfge8 milk fat globule EGF and factor V/VIII domain containing ISO CTD Direct Evidence: marker/mechanism CTD PMID:21127199 NCBI chrNW_004936483:14,868,171...14,880,552
Ensembl chrNW_004936483:14,865,033...14,880,794
JBrowse link
G Mif macrophage migration inhibitory factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:19602265 NCBI chrNW_004936619:1,207,058...1,208,010
Ensembl chrNW_004936619:1,203,746...1,208,442
JBrowse link
G Mki67 marker of proliferation Ki-67 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15706428 PMID:18768436 PMID:19436038 NCBI chrNW_004936486:15,561,327...15,587,109 JBrowse link
G Mme membrane metalloendopeptidase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23063927 NCBI chrNW_004936519:2,513,896...2,595,896
Ensembl chrNW_004936519:2,513,704...2,595,971
JBrowse link
G Mmp1 matrix metallopeptidase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23548910 NCBI chrNW_004936551:5,167,909...5,175,149
Ensembl chrNW_004936551:5,168,044...5,174,857
JBrowse link
G Mmp13 matrix metallopeptidase 13 disease_progression ISO protein:increased expression:tumor:positive correlation with lymph node metastases (p<0.001), negative correlation with overall survival (p=0.0008) RGD PMID:18373849 RGD:2293603 NCBI chrNW_004936551:5,040,084...5,050,384
Ensembl chrNW_004936551:5,040,084...5,050,384
JBrowse link
G Mmp14 matrix metallopeptidase 14 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24014025 NCBI chrNW_004936722:1,447,189...1,457,632
Ensembl chrNW_004936722:1,447,335...1,457,611
JBrowse link
G Mmp2 matrix metallopeptidase 2 disease_progression ISO DNA:SNP:promoter:-1306C>T (human)
protein:decreased expression:serum
protein:increased expression:breast
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:15538048 PMID:16949931 PMID:17642161 PMID:17851253 PMID:18398872 More... RGD:2290392 RGD:2290401 RGD:8547818 RGD:8655999 NCBI chrNW_004936475:7,801,356...7,825,831
Ensembl chrNW_004936475:7,801,277...7,825,851
JBrowse link
G Mmp9 matrix metallopeptidase 9 no_association
disease_progression
ISO DNA:SNPs:promoter, CDS:rs3918241, rs2274756 (p.R668Q) (human)
protein:increased expression:serum
DNA:SNPs, haplotype:rs17577, rs3787268 (human)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:15538048 PMID:18172859 PMID:19617202 PMID:20725776 PMID:21151179 More... RGD:2290343 RGD:8547818 RGD:8547827 RGD:8547837 RGD:8547839 RGD:8547893 NCBI chrNW_004936514:7,038,240...7,045,873
Ensembl chrNW_004936514:7,037,639...7,045,793
JBrowse link
G Mrpl13 mitochondrial ribosomal protein L13 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936470:26,386,511...26,424,480
Ensembl chrNW_004936470:26,386,517...26,425,775
JBrowse link
G Mrpl19 mitochondrial ribosomal protein L19 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936556:1,804,821...1,814,204
Ensembl chrNW_004936556:1,804,779...1,813,844
JBrowse link
G Mrpl9 mitochondrial ribosomal protein L9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936580:1,956,774...1,959,689 JBrowse link
G Mrps22 mitochondrial ribosomal protein S22 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936540:1,451,882...1,466,569
Ensembl chrNW_004936540:1,451,826...1,468,865
JBrowse link
G Mrps23 mitochondrial ribosomal protein S23 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004936490:5,195,525...5,202,737
Ensembl chrNW_004936490:5,195,418...5,201,296
JBrowse link
G Mrps28 mitochondrial ribosomal protein S28 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936656:3,871,065...3,896,009
Ensembl chrNW_004936656:3,871,504...3,895,989
JBrowse link
G Mrps7 mitochondrial ribosomal protein S7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936594:548,480...552,026
Ensembl chrNW_004936594:548,480...556,130
JBrowse link
G Mst1 macrophage stimulating 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 NCBI chrNW_004936529:1,298,853...1,306,088
Ensembl chrNW_004936529:1,299,300...1,303,959
JBrowse link
G Mt3 metallothionein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21170156 NCBI chrNW_004936475:8,864,512...8,866,516
Ensembl chrNW_004936475:8,864,675...8,866,506
JBrowse link
G Mtdh metadherin ISO CTD Direct Evidence: marker/mechanism CTD PMID:19111877 NCBI chrNW_004936470:45,016,099...45,079,709
Ensembl chrNW_004936470:45,016,099...45,079,710
JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16777985 PMID:17595805 PMID:28114181 NCBI chrNW_004936474:623,438...637,849
Ensembl chrNW_004936474:623,291...638,193
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:22729223 PMID:24631838 PMID:25599672 PMID:25741868 PMID:25799227 More... NCBI chrNW_004936474:158,376...282,310
Ensembl chrNW_004936474:157,590...282,342
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17595805 NCBI chrNW_004936484:16,087,924...16,180,089
Ensembl chrNW_004936484:16,087,923...16,180,148
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor treatment ISO mRNA:increased expression:mammary gland (mouse) RGD PMID:20820192 PMID:22439659 RGD:7207428 RGD:7241009 NCBI chrNW_004936470:20,480,844...20,485,955
Ensembl chrNW_004936470:20,480,829...20,485,965
JBrowse link
G Myh9 myosin heavy chain 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28650484 NCBI chrNW_004936492:4,384,215...4,466,229
Ensembl chrNW_004936492:4,384,215...4,466,262
JBrowse link
G Ncoa1 nuclear receptor coactivator 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20332317 NCBI chrNW_004936493:7,368,393...7,605,754
Ensembl chrNW_004936493:7,368,462...7,465,615
JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20332317 NCBI chrNW_004936496:14,844,923...15,102,922
Ensembl chrNW_004936496:14,844,855...15,016,454
JBrowse link
G Ncoa3 nuclear receptor coactivator 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20332317 NCBI chrNW_004936514:5,900,135...5,967,862
Ensembl chrNW_004936514:5,901,601...5,967,865
JBrowse link
G Ncor1 nuclear receptor corepressor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19781322 NCBI chrNW_004936821:382,756...538,254
Ensembl chrNW_004936821:382,383...536,223
JBrowse link
G Ndrg1 N-myc downstream regulated 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15341671 NCBI chrNW_004936470:16,051,291...16,102,563
Ensembl chrNW_004936470:16,051,015...16,102,585
JBrowse link
G Ndufs3 NADH:ubiquinone oxidoreductase core subunit S3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936562:1,667,780...1,674,670
Ensembl chrNW_004936562:1,664,293...1,674,670
JBrowse link
G Nectin2 nectin cell adhesion molecule 2 ISO CTD Direct Evidence: therapeutic CTD PMID:23758976 NCBI chrNW_004936706:1,470,910...1,498,986
Ensembl chrNW_004936706:1,470,738...1,498,993
JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:32621833 NCBI chrNW_004936509:6,589,967...6,621,171
Ensembl chrNW_004936509:6,590,630...6,620,262
JBrowse link
G Nfkbia NFKB inhibitor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936494:9,537,793...9,541,187
Ensembl chrNW_004936494:9,537,008...9,541,612
JBrowse link
G Nisch nischarin ISO CTD Direct Evidence: marker/mechanism CTD PMID:29912916 NCBI chrNW_004936473:3,295,515...3,331,324 JBrowse link
G Nmbr neuromedin B receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:24349381 NCBI chrNW_004936625:3,872,786...3,883,478
Ensembl chrNW_004936625:3,873,062...3,883,172
JBrowse link
G Nop9 NOP9 nucleolar protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004936722:250,001...255,908
Ensembl chrNW_004936722:249,358...256,192
JBrowse link
G Nos2 nitric oxide synthase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15631943 NCBI chrNW_004936538:4,052,277...4,097,051
Ensembl chrNW_004936538:4,052,448...4,097,051
JBrowse link
G Nos3 nitric oxide synthase 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15375496 PMID:19671875 NCBI chrNW_004936527:6,427,147...6,445,770
Ensembl chrNW_004936527:6,427,093...6,446,534
JBrowse link
G Notch1 notch receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 PMID:21679465 NCBI chrNW_004936669:1,292,016...1,334,061
Ensembl chrNW_004936669:1,292,088...1,332,428
JBrowse link
G Notch3 notch receptor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004936596:5,265,984...5,301,430
Ensembl chrNW_004936596:5,265,999...5,300,429
JBrowse link
G Notch4 notch receptor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 PMID:21679465 NCBI chrNW_004936727:1,386,842...1,409,823 JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18511948 NCBI chrNW_004936475:19,771,384...19,785,034
Ensembl chrNW_004936475:19,769,488...19,785,311
JBrowse link
G Nr2f1 nuclear receptor subfamily 2 group F member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 NCBI chrNW_004936523:9,508,204...9,517,266
Ensembl chrNW_004936523:9,507,965...9,517,272
JBrowse link
G Nr2f6 nuclear receptor subfamily 2 group F member 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 NCBI chrNW_004936596:3,596,720...3,606,283
Ensembl chrNW_004936596:3,597,651...3,605,836
JBrowse link
G Nrcam neuronal cell adhesion molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004936653:1,167,055...1,238,241
Ensembl chrNW_004936653:1,169,177...1,238,140
JBrowse link
G Nrg1 neuregulin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19617202 NCBI chrNW_004936766:1,104,841...1,306,368
Ensembl chrNW_004936766:1,104,728...1,305,972
JBrowse link
G Nrip1 nuclear receptor interacting protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22267197 NCBI chrNW_004936505:7,886,327...7,966,969
Ensembl chrNW_004936505:7,884,724...7,966,928
JBrowse link
G Nsd2 nuclear receptor binding SET domain protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24874954 NCBI chrNW_004936477:21,460,442...21,531,563
Ensembl chrNW_004936477:21,460,478...21,534,909
JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 NCBI chrNW_004936520:8,909,509...8,950,960
Ensembl chrNW_004936520:8,909,480...8,950,925
JBrowse link
G Nudt2 nudix hydrolase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20533549 NCBI chrNW_004936524:2,438,947...2,452,647
Ensembl chrNW_004936524:2,441,860...2,454,174
JBrowse link
G Ocln occludin ISO CTD Direct Evidence: marker/mechanism CTD PMID:17459053 PMID:24014025 NCBI chrNW_004936480:99,516...152,834
Ensembl chrNW_004936480:98,371...152,413
JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase severity ISO RGD PMID:24214978 RGD:9590192 NCBI chrNW_004936762:99,335...137,833
Ensembl chrNW_004936762:99,293...137,874
JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936470:42,628,890...42,670,311
Ensembl chrNW_004936470:42,628,667...42,643,347
JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20179234 NCBI chrNW_004936498:6,001,126...6,135,663
Ensembl chrNW_004936498:6,001,014...6,086,614
JBrowse link
G Pak2 p21 (RAC1) activated kinase 2 ISO RGD PMID:22886747 RGD:7775026 NCBI chrNW_004936784:1,351,034...1,391,992
Ensembl chrNW_004936784:1,351,039...1,391,992
JBrowse link
G Palb2 partner and localizer of BRCA2 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:17200668 PMID:17200671 PMID:17200672 PMID:24033266 PMID:24136930 More... NCBI chrNW_004936501:8,246,927...8,273,258 JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20941507 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642
JBrowse link
G Pcbp1 poly(rC) binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:35639300 NCBI chrNW_004936491:14,280,616...14,282,148
Ensembl chrNW_004936491:14,280,695...14,281,765
JBrowse link
G Pcna proliferating cell nuclear antigen disease_progression ISO RGD PMID:8098267 RGD:2315013 NCBI chrNW_004936485:13,766,221...13,771,215 JBrowse link
G Pde2a phosphodiesterase 2A ISO CTD Direct Evidence: marker/mechanism CTD PMID:12972520 NCBI chrNW_004936498:1,856,256...1,944,405
Ensembl chrNW_004936498:1,856,144...1,944,412
JBrowse link
G Pdgfa platelet derived growth factor subunit A ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936754:808,894...828,554
Ensembl chrNW_004936754:808,213...828,613
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta ISO RGD PMID:17050049 RGD:2292176 NCBI chrNW_004936504:4,762,251...4,799,789
Ensembl chrNW_004936504:4,762,184...4,799,829
JBrowse link
G Pdpk1 3-phosphoinositide dependent protein kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24739482 NCBI chrNW_004936694:1,444,819...1,487,628
Ensembl chrNW_004936694:1,444,880...1,488,265
Ensembl chrNW_004936694:1,444,880...1,488,265
JBrowse link
G Pdzk1 PDZ domain containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25751625 NCBI chrNW_004936867:426,648...439,512 JBrowse link
G Pecam1 platelet and endothelial cell adhesion molecule 1 ISO RGD PMID:21890879 RGD:6771361 NCBI chrNW_004936541:4,873,459...4,919,787
Ensembl chrNW_004936541:4,873,182...4,937,500
JBrowse link
G Per3 period circadian regulator 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20625127 NCBI chrNW_004936623:2,291,211...2,362,693
Ensembl chrNW_004936623:2,290,614...2,336,634
JBrowse link
G Pgr progesterone receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:19436038 PMID:21501481 NCBI chrNW_004936551:6,498,553...6,573,212
Ensembl chrNW_004936551:6,498,553...6,573,222
JBrowse link
G Phb1 prohibitin 1 ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004936490:12,127,065...12,138,870 JBrowse link
G Phgdh phosphoglycerate dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:21804546 NCBI chrNW_004936627:4,414,122...4,448,347
Ensembl chrNW_004936627:4,414,122...4,448,623
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor ClinVar PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chrNW_004936566:3,924,013...3,951,052
Ensembl chrNW_004936566:3,923,934...3,951,073
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO mRNA:increased expression:mammary tumor (mouse) RGD PMID:17699716 RGD:4108502 NCBI chrNW_004936480:1,188,408...1,273,210
Ensembl chrNW_004936480:1,188,183...1,273,537
JBrowse link
G Pim1 Pim-1 proto-oncogene, serine/threonine kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936476:22,295,023...22,300,155
Ensembl chrNW_004936476:22,295,021...22,300,161
JBrowse link
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19671742 PMID:19681904 PMID:32621833 NCBI chrNW_004936659:309,530...321,294
Ensembl chrNW_004936659:309,506...321,334
JBrowse link
G Pla2g4a phospholipase A2 group IVA ISO CTD Direct Evidence: marker/mechanism CTD PMID:21119660 NCBI chrNW_004936481:3,559,377...3,689,797
Ensembl chrNW_004936481:3,559,358...3,689,833
JBrowse link
G Plaat3 phospholipase A and acyltransferase 3 ISO mRNA,protein:decreased expression:tumor:mRNA decreased and protein undetectable in HRAS transgene-induced tumors RGD PMID:9049257 RGD:2290001 NCBI chrNW_004936599:5,509,723...5,524,837
Ensembl chrNW_004936599:5,521,186...5,524,472
JBrowse link
G Plekhd1 pleckstrin homology and coiled-coil domain containing D1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936495:12,691,693...12,729,776
Ensembl chrNW_004936495:12,691,524...12,730,227
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:23709753 PMID:24033266 PMID:25741868 PMID:27146957 PMID:28466842 More... NCBI chrNW_004936750:439,396...468,747 JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:23263490 PMID:23447401 PMID:24525744 PMID:24844595 PMID:25224212 More... NCBI chrNW_004936660:2,575,255...2,622,867
Ensembl chrNW_004936660:2,575,360...2,622,852
JBrowse link
G Ppargc1b PPARG coactivator 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:20961995 NCBI chrNW_004936504:5,099,334...5,198,279
Ensembl chrNW_004936504:5,099,470...5,198,584
JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent 1D ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004936490:2,139,201...2,183,850
Ensembl chrNW_004936490:2,139,078...2,184,602
JBrowse link
G Ppp1r12b protein phosphatase 1 regulatory subunit 12B ISO CTD Direct Evidence: marker/mechanism CTD PMID:28650484 NCBI chrNW_004936567:1,992,487...2,208,611
Ensembl chrNW_004936567:1,992,495...2,208,684
JBrowse link
G Ppp2r1a protein phosphatase 2 scaffold subunit Aalpha ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:25741868 PMID:26168268 PMID:26619011 PMID:28492532 PMID:31687265 More... NCBI chrNW_004936901:622,893...653,044
Ensembl chrNW_004936901:622,888...653,044
JBrowse link
G Prc1 protein regulator of cytokinesis 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25038754 NCBI chrNW_004936483:16,034,577...16,061,856
Ensembl chrNW_004936483:16,034,550...16,060,909
JBrowse link
G Prkca protein kinase C alpha ISO protein:decreased expression:breast RGD PMID:9474241 PMID:15454252 PMID:17965220 RGD:2292446 RGD:2292458 RGD:2292463 NCBI chrNW_004936541:6,231,604...6,488,201
Ensembl chrNW_004936541:6,233,110...6,488,052
JBrowse link
G Pten phosphatase and tensin homolog ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:1336932 PMID:1945792 PMID:9140396 PMID:9241266 PMID:9259288 More... NCBI chrNW_004936735:1,252,414...1,338,318
Ensembl chrNW_004936735:1,252,414...1,338,323
JBrowse link
G Ptges prostaglandin E synthase ISO protein:increased expression:breast RGD PMID:16353170 RGD:2300083 NCBI chrNW_004936487:16,959,263...16,968,909
Ensembl chrNW_004936487:16,959,231...16,968,922
JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18488158 NCBI chrNW_004936487:10,745,465...10,758,812
Ensembl chrNW_004936487:10,745,327...10,758,823
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 susceptibility ISO mRNA, protein:increased expression:breast
mRNA:decreased expression:breast
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:14605950 PMID:16127422 PMID:16870006 PMID:17285134 PMID:18334709 More... RGD:2300120 RGD:2300129 RGD:2300210 NCBI chrNW_004936481:3,821,564...3,828,086 JBrowse link
G Pthlh parathyroid hormone like hormone ISO CTD Direct Evidence: marker/mechanism CTD PMID:22267197 NCBI chrNW_004936760:197,525...209,212
Ensembl chrNW_004936760:197,525...209,518
JBrowse link
G Ptk2 protein tyrosine kinase 2 ISO protein:increased expression:breast
DNA:amplification
RGD PMID:16136050 PMID:16457699 RGD:2292558 RGD:2292559 NCBI chrNW_004936470:10,379,855...10,578,531
Ensembl chrNW_004936470:10,379,872...10,578,543
JBrowse link
G Ptprd protein tyrosine phosphatase receptor type D ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004936539:2,564,815...3,369,975
Ensembl chrNW_004936539:2,564,793...2,945,293
JBrowse link
G Rad50 RAD50 double strand break repair protein treatment ISO human gene in a rat model
DNA:deletion, splicing error::687delT, increased frequency in Finnish patients (8/317, p=0.008), possibly a founder mutation
RGD PMID:11373271 PMID:16474176 RGD:2300220 RGD:9831192 NCBI chrNW_004936647:2,546,100...2,637,524
Ensembl chrNW_004936647:2,543,599...2,637,846
JBrowse link
G Rad51 RAD51 recombinase ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004936471:4,119,020...4,136,811
Ensembl chrNW_004936471:4,114,530...4,136,248
JBrowse link
G Rad51b RAD51 paralog B ISO CTD Direct Evidence: marker/mechanism CTD PMID:19330030 NCBI chrNW_004936495:11,185,560...11,762,254
Ensembl chrNW_004936495:11,195,767...11,467,458
JBrowse link
G Rad51c RAD51 paralog C ISO CTD Direct Evidence: marker/mechanism CTD PMID:20400964 PMID:28825726 NCBI chrNW_004936490:4,440,638...4,473,301
Ensembl chrNW_004936490:4,439,097...4,473,357
JBrowse link
G Rad54l RAD54 like ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004936474:27,276,570...27,316,427
Ensembl chrNW_004936474:27,280,573...27,316,428
JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase ISO CTD Direct Evidence: therapeutic CTD PMID:12432273 NCBI chrNW_004936602:1,089,979...1,114,376
Ensembl chrNW_004936602:1,051,205...1,117,096
JBrowse link
G Ralyl RALY RNA binding protein like ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936656:19,459...179,394
Ensembl chrNW_004936656:18,671...329,984
JBrowse link
G Rara retinoic acid receptor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:26437033 NCBI chrNW_004936490:15,376,217...15,420,638
Ensembl chrNW_004936490:15,376,205...15,421,611
JBrowse link
G Rarb retinoic acid receptor beta ISO CTD Direct Evidence: therapeutic CTD PMID:16255778 NCBI chrNW_004936473:16,983,829...17,146,517
Ensembl chrNW_004936473:16,983,600...17,148,885
JBrowse link
G Rb1 RB transcriptional corepressor 1 disease_progression ISO allelic loss
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:1567185 PMID:11108660 PMID:14672398 PMID:19234134 PMID:20948315 RGD:2291991 RGD:9698451 NCBI chrNW_004936565:1,596,227...1,746,706
Ensembl chrNW_004936565:1,597,593...1,746,846
JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936590:260,685...335,143
Ensembl chrNW_004936590:260,685...334,721
JBrowse link
G Rbm3 RNA binding motif protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19734850 NCBI chrNW_004936721:547,751...551,273
Ensembl chrNW_004936721:547,777...551,270
JBrowse link
G Rbp4 retinol binding protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:35191604 NCBI chrNW_004936601:1,401,215...1,410,195
Ensembl chrNW_004936601:1,402,691...1,410,208
JBrowse link
G Rccd1 RCC1 domain containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936483:16,049,288...16,071,275
Ensembl chrNW_004936483:16,065,512...16,070,424
JBrowse link
G Recql RecQ like helicase ISO CTD Direct Evidence: marker/mechanism CTD PMID:25915596 NCBI chrNW_004936548:5,349,878...5,384,603
Ensembl chrNW_004936548:5,362,517...5,384,338
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:16322341 PMID:16728586 PMID:20154269 RGD:2298762 RGD:2298763 NCBI chrNW_004936599:3,800,142...3,810,583
Ensembl chrNW_004936599:3,801,636...3,809,813
JBrowse link
G Reps2 RALBP1 associated Eps domain containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19776672 NCBI chrNW_004936470:6,218,035...6,428,776
Ensembl chrNW_004936470:6,218,047...6,423,408
JBrowse link
G Rgs2 regulator of G protein signaling 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936638:1,065,866...1,068,649
Ensembl chrNW_004936638:1,065,832...1,069,247
JBrowse link
G Rhoa ras homolog family member A ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor ClinVar PMID:26619011 NCBI chrNW_004936529:1,000,050...1,045,655
Ensembl chrNW_004936529:999,935...1,045,681
JBrowse link
G Ribc2 RIB43A domain with coiled-coils 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936629:4,301,746...4,315,133
Ensembl chrNW_004936629:4,301,746...4,315,133
JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936888:57,212...62,722
Ensembl chrNW_004936888:56,811...63,776
JBrowse link
G Rmnd1 required for meiotic nuclear division 1 homolog ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936489:4,299,810...4,343,996
Ensembl chrNW_004936489:4,298,328...4,343,969
JBrowse link
G Rnf115 ring finger protein 115 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25751625 NCBI chrNW_004936867:492,561...553,498
Ensembl chrNW_004936867:490,248...551,552
JBrowse link
G Rnf182 ring finger protein 182 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004936552:513,773...517,148
Ensembl chrNW_004936552:513,894...514,637
JBrowse link
G Rock1 Rho associated coiled-coil containing protein kinase 1 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:20140017 NCBI chrNW_004936550:730,462...874,601
Ensembl chrNW_004936550:733,239...874,601
JBrowse link
G Ror1 receptor tyrosine kinase like orphan receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 NCBI chrNW_004936692:1,327,779...1,702,350
Ensembl chrNW_004936692:1,328,195...1,699,703
JBrowse link
G Rpl23a ribosomal protein L23a ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936538:4,929,893...4,933,759
Ensembl chrNW_004936538:4,929,895...4,933,761
JBrowse link
G Rpl31 ribosomal protein L31 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936661:86,834...91,309
Ensembl chrNW_004936661:86,547...91,380
JBrowse link
G Rplp2 ribosomal protein lateral stalk subunit P2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936888:574,896...577,567
Ensembl chrNW_004936888:574,583...577,640
JBrowse link
G Rps4x ribosomal protein S4 X-linked ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936762:1,364,238...1,368,858
Ensembl chrNW_004936762:1,364,318...1,367,945
JBrowse link
G Rps6 ribosomal protein S6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20197467 NCBI chrNW_004936652:1,252,986...1,255,987
Ensembl chrNW_004936652:1,253,025...1,255,906
JBrowse link
G Rps6kb2 ribosomal protein S6 kinase B2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20953835 NCBI chrNW_004936599:2,315,146...2,321,127
Ensembl chrNW_004936599:2,315,146...2,321,152
JBrowse link
G Rps7 ribosomal protein S7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936532:1,734,993...1,740,202
Ensembl chrNW_004936532:1,734,983...1,742,151
JBrowse link
G Rps8 ribosomal protein S8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936474:26,006,226...26,008,824
Ensembl chrNW_004936474:26,006,217...26,009,505
JBrowse link
G Rrad RRAD, Ras related glycolysis inhibitor and calcium channel regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:17195088 NCBI chrNW_004936475:17,173,170...17,176,446
Ensembl chrNW_004936475:17,173,165...17,176,463
JBrowse link
G Rspo3 R-spondin 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17468756 NCBI chrNW_004936639:2,475,710...2,552,725
Ensembl chrNW_004936639:2,475,710...2,552,725
JBrowse link
G Runx2 RUNX family transcription factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:32198086 NCBI chrNW_004936476:14,695,965...14,818,246
Ensembl chrNW_004936476:14,695,965...14,905,157
JBrowse link
G Rxrb retinoid X receptor beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:22322885 NCBI chrNW_004936476:25,655,164...25,662,369
Ensembl chrNW_004936476:25,655,209...25,662,416
JBrowse link
G Serpinb2 serpin family B member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936497:1,805,957...1,814,911
Ensembl chrNW_004936497:1,805,957...1,814,911
JBrowse link
G Serpinb5 serpin family B member 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16799634 NCBI chrNW_004936497:2,067,796...2,089,965
Ensembl chrNW_004936497:2,069,035...2,089,745
JBrowse link
G Setbp1 SET binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25751625 NCBI chrNW_004936517:1,616,169...1,798,002
Ensembl chrNW_004936517:1,616,169...1,970,398
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:26437033 NCBI chrNW_004936596:795,940...898,823
Ensembl chrNW_004936596:796,601...883,373
JBrowse link
G Sf3b1 splicing factor 3b subunit 1 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:23634996 PMID:26619011 NCBI chrNW_004936506:1,749,591...1,790,860
Ensembl chrNW_004936506:1,749,563...1,791,739
JBrowse link
G Sf3b2 splicing factor 3b subunit 2 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:26619011 NCBI chrNW_004936599:3,477,882...3,494,366
Ensembl chrNW_004936599:3,477,589...3,494,354
JBrowse link
G Sfrp1 secreted frizzled related protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18283316 NCBI chrNW_004936785:1,276,478...1,320,397
Ensembl chrNW_004936785:1,276,420...1,321,017
JBrowse link
G Sfrp2 secreted frizzled related protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18283316 NCBI chrNW_004936576:604,174...612,440
Ensembl chrNW_004936576:604,069...613,021
JBrowse link
G Sfrp5 secreted frizzled related protein 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18283316 NCBI chrNW_004936636:1,968,410...1,973,885
Ensembl chrNW_004936636:1,968,330...1,973,916
JBrowse link
G Shc1 SHC adaptor protein 1 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar NCBI chrNW_004936580:4,511,560...4,522,003
Ensembl chrNW_004936580:4,512,680...4,519,715
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 no_association ISO DNA:SNP:CDS:no association between SNP rs1979277, rs1979276 or rs3783 and susceptibility to breast cancer
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:17311260 PMID:17595805 RGD:2300328 NCBI chrNW_004936741:1,849,239...1,877,724
Ensembl chrNW_004936741:1,849,609...1,877,727
JBrowse link
G Sim1 SIM bHLH transcription factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15818620 NCBI chrNW_004936651:1,841,040...1,911,944
Ensembl chrNW_004936651:1,841,054...1,911,944
JBrowse link
G Sirt1 sirtuin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19839049 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215
JBrowse link
G Slc10a6 solute carrier family 10 member 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30186172 NCBI chrNW_004936920:285,185...310,395
Ensembl chrNW_004936920:285,185...309,494
JBrowse link
G Slc16a3 solute carrier family 16 member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22313602 NCBI chrNW_004936594:5,715,234...5,721,343
Ensembl chrNW_004936594:5,716,935...5,721,343
JBrowse link
G Slc22a18 solute carrier family 22 member 18 ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004936794:1,042,103...1,061,347
Ensembl chrNW_004936794:1,042,224...1,061,345
JBrowse link
G Slc28a1 solute carrier family 28 member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16837820 NCBI chrNW_004936483:16,929,896...16,976,560
Ensembl chrNW_004936483:16,929,896...16,975,969
JBrowse link
G Slc2a1 solute carrier family 2 member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20197467 NCBI chrNW_004936474:24,205,878...24,236,611
Ensembl chrNW_004936474:24,206,644...24,236,713
JBrowse link
G Slc2a10 solute carrier family 2 member 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004936514:6,490,728...6,504,152
Ensembl chrNW_004936514:6,493,512...6,497,063
JBrowse link
G Slc2a2 solute carrier family 2 member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19579870 NCBI chrNW_004936593:1,572,661...1,605,071
Ensembl chrNW_004936593:1,572,672...1,604,947
JBrowse link
G Slc2a5 solute carrier family 2 member 5 ISO CTD Direct Evidence: therapeutic CTD PMID:15449313 NCBI chrNW_004936623:3,226,533...3,249,909
Ensembl chrNW_004936623:3,226,515...3,249,914
JBrowse link
G Slc39a6 solute carrier family 39 member 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12839489 NCBI chrNW_004936517:9,166,989...9,188,114
Ensembl chrNW_004936517:9,167,334...9,189,345
JBrowse link
G Slc5a5 solute carrier family 5 member 5 ISO CTD Direct Evidence: therapeutic CTD PMID:12489024 NCBI chrNW_004936596:3,176,009...3,188,637
Ensembl chrNW_004936596:3,177,422...3,188,637
JBrowse link
G Smad4 SMAD family member 4 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:8898652 PMID:9214508 PMID:9285566 PMID:9582123 PMID:9679244 More... NCBI chrNW_004936497:12,242,869...12,278,012
Ensembl chrNW_004936497:12,249,140...12,278,123
JBrowse link
G Snai1 snail family transcriptional repressor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 PMID:24014025 NCBI chrNW_004936514:4,456,498...4,462,436
Ensembl chrNW_004936514:4,456,484...4,462,987
JBrowse link
G Snai2 snail family transcriptional repressor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 NCBI chrNW_004936590:3,813,916...3,817,642
Ensembl chrNW_004936590:3,813,888...3,817,642
JBrowse link
G Sncg synuclein gamma ISO CTD Direct Evidence: marker/mechanism CTD PMID:20595634 NCBI chrNW_004936804:16,869...21,684
Ensembl chrNW_004936804:16,614...21,969
JBrowse link
G Socs1 suppressor of cytokine signaling 1 ISO DNA:hypermethylation RGD PMID:15361843 RGD:2298907 NCBI chrNW_004936530:9,312,965...9,315,593
Ensembl chrNW_004936530:9,312,965...9,316,165
JBrowse link
G Socs2 suppressor of cytokine signaling 2 disease_progression ISO RGD PMID:17651480 RGD:2298902 NCBI chrNW_004936507:10,013,982...10,015,480
Ensembl chrNW_004936507:10,012,101...10,014,456
JBrowse link
G Sod2 superoxide dismutase 2 ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:15168344 PMID:17965603 PMID:19385967 PMID:19756960 PMID:20562527 RGD:1581248 NCBI chrNW_004936489:11,178,338...11,191,601
Ensembl chrNW_004936489:11,178,015...11,191,781
JBrowse link
G Spata18 spermatogenesis associated 18 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936482:15,178,667...15,262,897 JBrowse link
G Spp1 secreted phosphoprotein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18949741 PMID:22531848 NCBI chrNW_004936905:148,956...156,023
Ensembl chrNW_004936905:148,945...156,079
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase disease_progression ISO protein:altered localization:cytoplasm
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:19830888 PMID:21357651 RGD:2315076 NCBI chrNW_004936561:3,826,802...3,844,406
Ensembl chrNW_004936561:3,825,787...3,844,483
JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30394316 NCBI chrNW_004936492:115,923...174,614
Ensembl chrNW_004936492:115,821...174,775
JBrowse link
G St14 ST14 transmembrane serine protease matriptase disease_progression ISO protein:increased expression:breast RGD PMID:17163404 RGD:2315089 NCBI chrNW_004936572:2,137,820...2,182,674
Ensembl chrNW_004936572:2,137,332...2,182,742
JBrowse link
G Stard8 StAR related lipid transfer domain containing 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004936777:316,332...358,241
Ensembl chrNW_004936777:323,367...358,243
JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14975756 NCBI chrNW_004936490:17,119,189...17,178,402
Ensembl chrNW_004936490:17,117,290...17,178,402
JBrowse link
G Stc2 stanniocalcin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18492817 NCBI chrNW_004936609:2,319,546...2,331,049
Ensembl chrNW_004936609:2,319,111...2,332,988
JBrowse link
G Stmn1 stathmin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004936474:10,470,006...10,475,557
Ensembl chrNW_004936474:10,468,728...10,475,594
JBrowse link
G Stxbp4 syntaxin binding protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936490:7,406,130...7,553,389
Ensembl chrNW_004936490:7,406,124...7,554,118
JBrowse link
G Syne1 spectrin repeat containing nuclear envelope protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004936489:4,903,176...5,177,987 JBrowse link
G Synj2 synaptojanin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936489:9,848,070...9,911,952
Ensembl chrNW_004936489:9,848,062...9,908,760
JBrowse link
G Tank TRAF family member associated NFKB activator ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936469:17,665,604...17,754,845
Ensembl chrNW_004936469:17,665,593...17,742,422
JBrowse link
G Tbx3 T-box transcription factor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21098263 NCBI chrNW_004936558:7,230,361...7,243,651
Ensembl chrNW_004936558:7,230,668...7,244,361
JBrowse link
G Tcl1b TCL1 family AKT coactivator B ISO CTD Direct Evidence: marker/mechanism CTD PMID:20228224 NCBI chrNW_004936604:78,241...83,259 JBrowse link
G Tert telomerase reverse transcriptase disease_progression
susceptibility
ISO mRNA:increased expression:breast
mRNA:increased expression:plasma
CTD Direct Evidence: marker/mechanism
DNA:SNPs:promoter:-1381C>T,-659G>A,-244C>T (human)
RGD
CTD
PMID:14654933 PMID:17616810 PMID:17848914 PMID:17974999 PMID:23535731 RGD:2291969 RGD:2291981 RGD:2291983 RGD:2291987 NCBI chrNW_004936815:468,987...492,666
Ensembl chrNW_004936815:469,020...491,697
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO CTD Direct Evidence: therapeutic CTD PMID:16204029 NCBI chrNW_004936534:2,481,804...2,518,573
Ensembl chrNW_004936534:2,481,806...2,499,317
JBrowse link
G Tfpi2 tissue factor pathway inhibitor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936803:69,296...90,270
Ensembl chrNW_004936803:73,946...90,295
JBrowse link
G Tfrc transferrin receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16904380 PMID:19238537 NCBI chrNW_004936784:696,738...728,385
Ensembl chrNW_004936784:696,713...728,543
JBrowse link
G Tgm2 transglutaminase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19579870 NCBI chrNW_004936561:3,178,244...3,207,551
Ensembl chrNW_004936561:3,178,293...3,207,561
JBrowse link
G Thbs1 thrombospondin 1 ISO CTD Direct Evidence: therapeutic CTD PMID:9309585 NCBI chrNW_004936471:3,064,466...3,081,125
Ensembl chrNW_004936471:3,064,422...3,081,949
JBrowse link
G Themis2 thymocyte selection associated family member 2 ISO CTD Direct Evidence: therapeutic CTD PMID:19942713 NCBI chrNW_004936474:12,104,430...12,120,064
Ensembl chrNW_004936474:12,104,430...12,119,479
JBrowse link
G Timp2 TIMP metallopeptidase inhibitor 2 ISO protein:decreased expression:serum
protein:decreased expression:breast
RGD PMID:17240786 PMID:17642161 RGD:2290392 RGD:2290398 NCBI chrNW_004936594:3,232,433...3,244,241
Ensembl chrNW_004936594:3,232,355...3,244,241
JBrowse link
G Timp4 TIMP metallopeptidase inhibitor 4 ISO RGD PMID:9190892 RGD:2290455 NCBI chrNW_004936602:1,488,993...1,496,108
Ensembl chrNW_004936602:1,489,545...1,495,478
JBrowse link
G Tle3 TLE family member 3, transcriptional corepressor ISO CTD Direct Evidence: marker/mechanism CTD PMID:19075277 NCBI chrNW_004936471:29,682,313...29,730,229
Ensembl chrNW_004936471:29,682,947...29,731,031
JBrowse link
G Tmeff2 transmembrane protein with EGF like and two follistatin like domains 2 ISO DNA:hypermethylation:promoter RGD PMID:16234815 RGD:2290489 NCBI chrNW_004936506:6,113,521...6,375,986
Ensembl chrNW_004936506:6,114,108...6,355,200
JBrowse link
G Tmem25 transmembrane protein 25 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19776672 NCBI chrNW_004936542:3,569,735...3,575,987
Ensembl chrNW_004936542:3,571,460...3,579,462
JBrowse link
G Tnf tumor necrosis factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17516992 PMID:19446661 NCBI chrNW_004936727:1,936,066...1,937,766
Ensembl chrNW_004936727:1,936,066...1,937,766
JBrowse link
G Tnfsf10 TNF superfamily member 10 ISO CTD Direct Evidence: therapeutic CTD PMID:18483385 NCBI chrNW_004936593:212,642...230,645
Ensembl chrNW_004936593:212,532...230,651
JBrowse link
G Tnip1 TNFAIP3 interacting protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004936647:3,914,887...3,959,698
Ensembl chrNW_004936647:3,914,887...3,959,672
JBrowse link
G Top2a DNA topoisomerase II alpha disease_progression ISO DNA:amplification, deletion (human)
DNA:deletion (human)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:11583189 PMID:12006526 PMID:16234514 PMID:18465341 PMID:18702822 More... RGD:2315120 RGD:2315127 RGD:2315129 NCBI chrNW_004936490:15,441,463...15,465,692
Ensembl chrNW_004936490:15,441,575...15,466,978
JBrowse link
G Tox3 TOX high mobility group box family member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17529967 NCBI chrNW_004936475:5,283,615...5,388,104
Ensembl chrNW_004936475:5,283,622...5,388,067
JBrowse link
G Tp53 tumor protein p53 susceptibility ISO DNA:missense mutation: :p.R72P
ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor
RGD
ClinVar
PMID:124622 PMID:253702 PMID:960674 PMID:1349175 PMID:1359493 More... RGD:2290534 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:12374701 PMID:30705370 RGD:2325153 NCBI chrNW_004936471:6,589,395...6,668,242
Ensembl chrNW_004936471:6,589,564...6,668,305
JBrowse link
G Tp53bp2 tumor protein p53 binding protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28650484 NCBI chrNW_004936526:936,981...1,000,070
Ensembl chrNW_004936526:936,359...1,000,076
JBrowse link
G Tp63 tumor protein p63 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25739959 NCBI chrNW_004936578:492,267...705,282
Ensembl chrNW_004936578:491,507...705,729
JBrowse link
G Tp73 tumor protein p73 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28212736 NCBI chrNW_004936737:171,894...211,464
Ensembl chrNW_004936737:172,467...211,464
JBrowse link
G Trerf1 transcriptional regulating factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19075277 NCBI chrNW_004936476:17,439,172...17,654,425
Ensembl chrNW_004936476:17,527,394...17,655,453
JBrowse link
G Trim47 tripartite motif containing 47 ISO CTD Direct Evidence: marker/mechanism CTD PMID:31981573 NCBI chrNW_004936594:1,049,308...1,053,533
Ensembl chrNW_004936594:1,049,470...1,053,515
JBrowse link
G Trmt11 tRNA methyltransferase 11 homolog ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chrNW_004936639:3,442,026...3,494,303
Ensembl chrNW_004936639:3,440,703...3,494,362
JBrowse link
G Tubb3 tubulin beta 3 class III ISO CTD Direct Evidence: marker/mechanism CTD PMID:21781528 NCBI chrNW_004936641:184,736...193,835
Ensembl chrNW_004936641:184,765...193,819
JBrowse link
G Txn thioredoxin ISO CTD Direct Evidence: marker/mechanism CTD PMID:30396169 NCBI chrNW_004936559:2,811,786...2,822,528
Ensembl chrNW_004936559:2,811,782...2,822,528
JBrowse link
G Tymp thymidine phosphorylase disease_progression ISO RGD PMID:16854285 RGD:2293718 NCBI chrNW_004936629:315,609...320,356
Ensembl chrNW_004936629:315,610...319,076
JBrowse link
G Tyms thymidylate synthetase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16723031 PMID:19020767 PMID:21501481 NCBI chrNW_004936550:33,797...42,233
Ensembl chrNW_004936550:34,048...41,840
JBrowse link
G Ubd ubiquitin D ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936723:1,218,621...1,221,070
Ensembl chrNW_004936723:1,218,258...1,221,451
JBrowse link
G Ube2c ubiquitin conjugating enzyme E2 C ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004936514:7,204,332...7,208,340
Ensembl chrNW_004936514:7,199,539...7,207,655
JBrowse link
G Ublcp1 ubiquitin like domain containing CTD phosphatase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936515:4,093,255...4,111,616
Ensembl chrNW_004936515:4,096,146...4,112,234
JBrowse link
G Umps uridine monophosphate synthetase ISO CTD Direct Evidence: marker/mechanism CTD PMID:19020767 PMID:19151563 NCBI chrNW_004936725:553,278...564,846
Ensembl chrNW_004936725:549,804...565,141
JBrowse link
G Upk1b uroplakin 1B ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chrNW_004936536:6,178,159...6,208,273
Ensembl chrNW_004936536:6,178,127...6,208,913
JBrowse link
G Vdr vitamin D receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16280049 PMID:22892281 NCBI chrNW_004936512:5,741,836...5,800,999
Ensembl chrNW_004936512:5,740,748...5,801,109
JBrowse link
G Vegfa vascular endothelial growth factor A ISO protein:increased expression:breast RGD PMID:19567820 PMID:19722158 RGD:2315457 RGD:2315461 NCBI chrNW_004936476:16,245,134...16,261,180
Ensembl chrNW_004936476:16,247,100...16,260,673
JBrowse link
G Vegfb vascular endothelial growth factor B ISO CTD Direct Evidence: marker/mechanism CTD PMID:23146280 NCBI chrNW_004936599:4,963,161...4,966,258
Ensembl chrNW_004936599:4,962,222...4,966,264
JBrowse link
G Vegfc vascular endothelial growth factor C ISO CTD Direct Evidence: marker/mechanism CTD PMID:18509974 PMID:26124351 NCBI chrNW_004936516:7,217,543...7,332,531
Ensembl chrNW_004936516:7,217,543...7,332,559
JBrowse link
G Vim vimentin ISO CTD Direct Evidence: marker/mechanism CTD PMID:21501481 PMID:24014025 PMID:25330770 PMID:27811057 NCBI chrNW_004936520:10,051,692...10,059,324
Ensembl chrNW_004936520:10,052,012...10,059,182
JBrowse link
G Vps39 VPS39 subunit of HOPS complex ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004936471:5,457,363...5,512,966
Ensembl chrNW_004936471:5,457,035...5,512,625
JBrowse link
G Wnt10b Wnt family member 10B ISO CTD Direct Evidence: marker/mechanism CTD PMID:12437293 NCBI chrNW_004936512:6,768,240...6,774,172
Ensembl chrNW_004936512:6,768,240...6,774,172
JBrowse link
G Wt1 WT1 transcription factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:14961577 NCBI chrNW_004936533:5,411,949...5,459,693
Ensembl chrNW_004936533:5,411,848...5,459,693
JBrowse link
G Wwox WW domain containing oxidoreductase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17200365 NCBI chrNW_004936475:26,342,245...27,209,563
Ensembl chrNW_004936475:26,342,220...27,208,711
JBrowse link
G Xpo1 exportin 1 ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:26619011 NCBI chrNW_004936491:6,921,753...6,962,062
Ensembl chrNW_004936491:6,921,319...6,962,343
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 susceptibility
disease_progression
no_association
ISO DNA:polymorphism: :p.R399Q
DNA:polymorphism:intron:IVS10+141G>A
DNA:polymorphisms: :p.R194W, p.R399Q
RGD PMID:16596326 PMID:16963196 PMID:17381415 PMID:19051060 RGD:2302566 RGD:2302573 RGD:2302574 RGD:2302575 NCBI chrNW_004936706:752,571...783,746
Ensembl chrNW_004936706:751,108...783,777
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12023982 NCBI chrNW_004936527:7,760,609...7,785,360
Ensembl chrNW_004936527:7,760,719...7,785,391
JBrowse link
G Xrcc3 X-ray repair cross complementing 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12023982 NCBI chrNW_004936621:1,462,441...1,474,937
Ensembl chrNW_004936621:1,462,428...1,473,868
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 PMID:28524356 NCBI chrNW_004936551:5,638,383...5,740,523
Ensembl chrNW_004936551:5,634,751...5,740,567
JBrowse link
G Ybx1 Y-box binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15703814 NCBI chrNW_004936474:24,026,459...24,047,724
Ensembl chrNW_004936474:24,026,377...24,047,724
JBrowse link
G Zc3h11a zinc finger CCCH-type containing 11A ISO CTD Direct Evidence: marker/mechanism CTD PMID:25038754 NCBI chrNW_004936567:863,295...901,837 JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19839049 PMID:21501481 NCBI chrNW_004936574:17,643...175,762
Ensembl chrNW_004936574:17,684...178,293
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19839049 NCBI chrNW_004936469:32,240,730...32,372,413
Ensembl chrNW_004936469:32,240,835...32,371,267
JBrowse link
G Znf366 zinc finger protein 366 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20008677 PMID:21122099 NCBI chrNW_004936549:3,991,181...4,057,150
Ensembl chrNW_004936549:3,991,123...4,057,165
JBrowse link
G Znf404 zinc finger protein 404 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936706:1,013,024...1,030,283 JBrowse link
G Zswim5 zinc finger SWIM-type containing 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004936474:26,213,415...26,389,985
Ensembl chrNW_004936474:26,211,291...26,389,991
JBrowse link
Animal Mammary Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl1 acyl-CoA synthetase long chain family member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936554:4,425,518...4,484,853
Ensembl chrNW_004936554:4,425,495...4,484,887
JBrowse link
G Actb actin beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936765:667,107...670,627
Ensembl chrNW_004936765:667,053...670,672
JBrowse link
G Actg1 actin gamma 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936594:5,170,711...5,173,251
Ensembl chrNW_004936594:5,170,711...5,173,247
JBrowse link
G Actn4 actinin alpha 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936801:1,333,077...1,402,885
Ensembl chrNW_004936801:1,333,077...1,404,054
JBrowse link
G Adcy5 adenylate cyclase 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936725:1,751,272...1,897,937
Ensembl chrNW_004936725:1,751,266...1,897,946
JBrowse link
G Alcam activated leukocyte cell adhesion molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936701:895,414...1,084,155
Ensembl chrNW_004936701:895,376...1,084,172
JBrowse link
G Anxa1 annexin A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:16316942 PMID:22248470 NCBI chrNW_004936503:9,124,314...9,142,372
Ensembl chrNW_004936503:9,124,264...9,142,413
JBrowse link
G Anxa2 annexin A2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22248470 NCBI chrNW_004936471:21,274,112...21,329,286
Ensembl chrNW_004936471:21,274,027...21,329,503
JBrowse link
G Anxa4 annexin A4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936491:13,982,926...14,047,690
Ensembl chrNW_004936491:13,982,677...14,047,690
JBrowse link
G Apc APC regulator of WNT signaling pathway ISO CTD Direct Evidence: marker/mechanism CTD PMID:9111214 NCBI chrNW_004936531:6,899,580...7,019,016
Ensembl chrNW_004936531:6,899,788...7,0