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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Respiratory Tract Infections
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Accession:DOID:9008680 term browser browse the term
Definition:Invasion of the host RESPIRATORY SYSTEM by microorganisms, usually leading to pathological processes or diseases.
Synonyms:exact_synonym: Respiratory Infection, Upper;   Respiratory Infections;   Respiratory Tract Infection;   Upper Respiratory Infections;   Upper Respiratory Tract Infections
 primary_id: MESH:D012141;   RDO:0000329



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Respiratory Tract Infections term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain derived neurotrophic factor ISO protein:decreased expression:platelet, serum RGD PMID:17317133 RGD:4891069 NCBI chr 2:109,505,045...109,557,388
Ensembl chr 2:109,505,045...109,557,352
JBrowse link
G Cxcr3 C-X-C motif chemokine receptor 3 IMP RGD PMID:19039768 RGD:4892119 NCBI chr  X:100,775,141...100,777,753
Ensembl chr  X:100,775,141...100,777,875
JBrowse link
G Fbln5 fibulin 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12189163 NCBI chr12:101,712,820...101,785,541
Ensembl chr12:101,712,824...101,785,314
JBrowse link
G H2-M3 histocompatibility 2, M region locus 3 ISO RGD PMID:19775370 RGD:5144114 NCBI chr17:37,581,094...37,585,380
Ensembl chr17:37,581,111...37,585,375
JBrowse link
G Il13 interleukin 13 ISO Severe Acute Respiratory Syndrome RGD PMID:14633438 RGD:4145665 NCBI chr11:53,522,150...53,525,529
Ensembl chr11:53,522,151...53,525,529
JBrowse link
G Il16 interleukin 16 ISO protein:increased expression:serum RGD PMID:14633438 RGD:4145665 NCBI chr 7:83,292,027...83,395,479
Ensembl chr 7:83,292,033...83,394,934
JBrowse link
G Il4 interleukin 4 ISO associated with Asthma RGD PMID:20573437 RGD:5128554 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496
JBrowse link
G Il6ra interleukin 6 receptor, alpha ISO DNA:polymorphisms:promoter, exon:-183G>A (human) RGD PMID:20951753 RGD:5128631 NCBI chr 3:89,776,631...89,820,503
Ensembl chr 3:89,771,366...89,820,503
JBrowse link
G Irf1 interferon regulatory factor 1 IMP RGD PMID:10497103 RGD:5128721 NCBI chr11:53,660,841...53,669,200
Ensembl chr11:53,660,841...53,669,200
JBrowse link
G Irf3 interferon regulatory factor 3 IMP RGD PMID:17027894 RGD:5128795 NCBI chr 7:44,647,072...44,652,272
Ensembl chr 7:44,647,072...44,652,272
JBrowse link
G Lepr leptin receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:17229951 NCBI chr 4:101,574,393...101,676,375
Ensembl chr 4:101,574,601...101,672,549
JBrowse link
G Mbl2 mannose-binding lectin (protein C) 2 susceptibility ISO DNA:polymorphisms:5' utr, exon:multiple (human)
protein:decreased secretion:serum (human)
DNA:SNP:exon:p.G54D(rs1800450)(human)
RGD PMID:19767106 PMID:19169708 PMID:15249448 RGD:4889439, RGD:4889453, RGD:8693755 NCBI chr19:30,210,306...30,217,087
Ensembl chr19:30,210,342...30,217,087
JBrowse link
G Mx1 MX dynamin-like GTPase 1 ISO protein:increased expression:blood (human) RGD PMID:25542463 RGD:126777677 NCBI chr16:97,248,235...97,264,106
Ensembl chr16:97,248,235...97,264,107
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:12920075 NCBI chr  X:10,024,455...10,083,034
Ensembl chr  X:9,939,860...10,083,159
JBrowse link
G Tnf tumor necrosis factor ISO Severe Acute Respiratory Syndrome; protein:increased expression:serum RGD PMID:14633438 RGD:4145665 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
allergic bronchopulmonary aspergillosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl17 C-C motif chemokine ligand 17 ISO associated with Cystic Fibrosis RGD PMID:17898016 RGD:4145612 NCBI chr 8:95,535,996...95,538,666
Ensembl chr 8:95,537,081...95,538,664
JBrowse link
G Ccr1 C-C motif chemokine receptor 1 IMP RGD PMID:15951834 RGD:5688155 NCBI chr 9:123,762,163...123,768,729
Ensembl chr 9:123,762,161...123,768,729
JBrowse link
G Ccr2 C-C motif chemokine receptor 2 IMP RGD PMID:10946288 RGD:8661731 NCBI chr 9:123,901,954...123,913,594
Ensembl chr 9:123,901,987...123,913,594
JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator ISO DNA:mutations: : RGD PMID:11243954 RGD:4140482 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767
JBrowse link
G H2-Ab1 histocompatibility 2, class II antigen A, beta 1 susceptibility ISO associated with cystic fibrosis; DNA:polymorphisms: :DQB1*06:02, DQB1*02:01(human) RGD PMID:23278646 RGD:36049760 NCBI chr17:34,482,201...34,488,392
Ensembl chr17:34,476,663...34,488,393
JBrowse link
G H2-Eb1 histocompatibility 2, class II antigen E beta susceptibility ISO associated with cystic fibrosis; DNA:polymorphisms: : RGD PMID:23278646 RGD:36049760 NCBI chr17:34,524,841...34,535,648
Ensembl chr17:34,524,841...34,535,648
JBrowse link
G Icam1 intercellular adhesion molecule 1 IEP RGD PMID:7743671 RGD:8547590 NCBI chr 9:20,927,236...20,940,110
Ensembl chr 9:20,927,281...20,940,113
JBrowse link
G Il1a interleukin 1 alpha IEP RGD PMID:8699818 RGD:7794730 NCBI chr 2:129,141,530...129,151,892
Ensembl chr 2:129,141,530...129,151,892
JBrowse link
G Mbl2 mannose-binding lectin (protein C) 2 susceptibility ISO Chronic Necrotizing Pulmonary Aspergillosis; DNA:missense mutation:exon:p.R52C (human)
DNA:SNP:intron:1011G>A(human)
RGD PMID:11474427 PMID:16487239 RGD:4889577, RGD:8693711 NCBI chr19:30,210,306...30,217,087
Ensembl chr19:30,210,342...30,217,087
JBrowse link
G Tlr9 toll-like receptor 9 susceptibility ISO
IMP
DNA:SNP:promoter:g.-1237T>C rs5743836 (human) RGD PMID:18275280 PMID:18936185 RGD:5130863, RGD:5130858 NCBI chr 9:106,099,797...106,104,075
Ensembl chr 9:106,099,797...106,104,082
JBrowse link
G Tnf tumor necrosis factor IEP RGD PMID:8699818 RGD:7794730 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a susceptibility ISO DNA:snps:5' utr, exon:g.-609G>T rs4149570, g.36A>G rs767455 (human) RGD PMID:20646338 RGD:5131174 NCBI chr 6:125,326,686...125,339,446
Ensembl chr 6:125,326,325...125,339,447
JBrowse link
allergic rhinitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP-binding cassette, sub-family B member 1A severity ISO DNA:snp:exon:c.1236C>T (human) RGD PMID:24040855 RGD:8657076 NCBI chr 5:8,617,091...8,798,575
Ensembl chr 5:8,710,077...8,798,575
JBrowse link
G Ace angiotensin I converting enzyme no_association ISO DNA:deletion:intron:IVS16+1464-1751del (human) RGD PMID:15112973 RGD:8142345 NCBI chr11:105,858,774...105,880,790
Ensembl chr11:105,858,771...105,880,790
JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 ISO mRNA, protein:increased expression:nasal mucosa (rat) RGD PMID:15362690 RGD:11522724 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004
JBrowse link
G Cat catalase ISO CTD Direct Evidence: marker/mechanism CTD PMID:29028686 NCBI chr 2:103,284,249...103,315,498
Ensembl chr 2:103,284,194...103,315,505
JBrowse link
G Ccl11 C-C motif chemokine ligand 11 treatment ISO RGD PMID:23089405 RGD:7248414 NCBI chr11:81,948,658...81,953,781
Ensembl chr11:81,948,649...81,953,781
JBrowse link
G Ccl26 C-C motif chemokine ligand 26 ISO protein:increased expression:oronasal secretion (human) RGD PMID:23883806 RGD:7364793 NCBI chr 5:135,589,302...135,592,423
Ensembl chr 5:135,589,302...135,592,423
JBrowse link
G Cd40 CD40 antigen ISO protein:increased expression:lymphocyte RGD PMID:19086656 RGD:8547782 NCBI chr 2:164,897,535...164,913,574
Ensembl chr 2:164,897,547...164,914,868
JBrowse link
G Cd40lg CD40 ligand ISO protein:increased expression:lymphocyte RGD PMID:19086656 RGD:8547782 NCBI chr  X:56,257,448...56,269,402
Ensembl chr  X:56,257,503...56,269,402
JBrowse link
G Cldn3 claudin 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:33441633 NCBI chr 5:135,015,068...135,016,330
Ensembl chr 5:135,015,068...135,016,326
JBrowse link
G Cldn7 claudin 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:33441633 NCBI chr11:69,855,605...69,858,712
Ensembl chr11:69,855,605...69,858,711
JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 treatment IDA RGD PMID:10436391 RGD:11344920 NCBI chr 1:60,948,184...60,954,991
Ensembl chr 1:60,926,159...60,954,991
JBrowse link
G F2 coagulation factor II ISO protein:increased expression:nasal mucus RGD PMID:21711961 RGD:5147783 NCBI chr 2:91,442,742...91,466,799
Ensembl chr 2:91,455,665...91,466,759
JBrowse link
G Fcgr4 Fc receptor, IgG, low affinity IV susceptibility ISO DNA:polymorphism:exon:p.F158V(rs396991)(human) RGD PMID:18199088 RGD:5508449 NCBI chr 1:170,846,495...170,857,330
Ensembl chr 1:170,846,489...170,857,330
JBrowse link
G Gria1 glutamate receptor, ionotropic, AMPA1 (alpha 1) ISO CTD Direct Evidence: marker/mechanism CTD PMID:34624383 NCBI chr11:56,902,342...57,221,070
Ensembl chr11:56,902,213...57,221,070
JBrowse link
G Gria2 glutamate receptor, ionotropic, AMPA2 (alpha 2) ISO CTD Direct Evidence: marker/mechanism CTD PMID:34624383 NCBI chr 3:80,588,757...80,711,534
Ensembl chr 3:80,588,757...80,710,142
JBrowse link
G H2-M3 histocompatibility 2, M region locus 3 ISO RGD PMID:20487636 RGD:5144132 NCBI chr17:37,581,094...37,585,380
Ensembl chr17:37,581,111...37,585,375
JBrowse link
G Hmox1 heme oxygenase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:36127783 NCBI chr 8:75,820,246...75,827,221
Ensembl chr 8:75,820,249...75,827,217
JBrowse link
G Hrh1 histamine receptor H1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23333628 NCBI chr 6:114,374,897...114,459,432
Ensembl chr 6:114,374,897...114,460,257
JBrowse link
G Ifng interferon gamma treatment ISO associated with Asthma
CTD Direct Evidence: marker/mechanism
CTD
RGD
PMID:29871060 PMID:12787306 PMID:18510219 RGD:7829803, RGD:10755770 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797
JBrowse link
G Il10 interleukin 10 treatment ISO
IDA
CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:36127783 PMID:23883806 PMID:23253209 RGD:7364793, RGD:7364818 NCBI chr 1:130,947,459...130,952,707
Ensembl chr 1:130,947,582...130,952,711
JBrowse link
G Il13 interleukin 13 susceptibility
no_association
ISO DNA:polymorphism:exon:c. 2044G>A (human)
CTD Direct Evidence: marker/mechanism
DNA:missense mutation:cds:p.R130Q (rs20541) (human)
DNA:SNPs:promoter, cds:-1112C>T, p.R130Q (rs1800925, rs20541) (human)
DNA:SNP:promoter:-1512A>C (rs1881457) (human)
CTD
OMIM
RGD
PMID:17091279 PMID:22852128 PMID:12928861 PMID:23996716 RGD:4152796, RGD:8549518, RGD:8549516, RGD:8549501 NCBI chr11:53,522,150...53,525,529
Ensembl chr11:53,522,151...53,525,529
JBrowse link
G Il13ra2 interleukin 13 receptor, alpha 2 ISO protein:increased expression:serum RGD PMID:21462799 RGD:8549521 NCBI chr  X:146,166,474...146,214,982
Ensembl chr  X:146,166,472...146,212,188
JBrowse link
G Il17a interleukin 17A susceptibility ISO DNA:snp:promoter:c.-444A>G (human)
mRNA:increased expression:peripheral blood mononuclear cell (human)
RGD PMID:22507625 PMID:21535180 RGD:9068429, RGD:5147409 NCBI chr 1:20,801,129...20,804,720
Ensembl chr 1:20,801,129...20,804,720
JBrowse link
G Il18 interleukin 18 severity
no_association
ISO DNA:SNP:promoter:-137G>C (rs187238) (human)
DNA:SNP:promoter:-140C>G (rs360721) (human)
RGD PMID:22840759 PMID:22840759 RGD:8655914, RGD:8655914 NCBI chr 9:50,466,000...50,493,141
Ensembl chr 9:50,466,127...50,493,140
JBrowse link
G Il1b interleukin 1 beta ISO protein:increased expression:nasal mucus RGD PMID:7750009 RGD:7401199 NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059
JBrowse link
G Il2 interleukin 2 ISO RGD PMID:12592663 RGD:8662963 NCBI chr 3:37,174,862...37,180,103
Ensembl chr 3:37,174,672...37,180,108
JBrowse link
G Il4 interleukin 4 treatment ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:36127783 PMID:9893928 PMID:24620662 PMID:8908280 PMID:14653048 RGD:7829796, RGD:11522769, RGD:7829827, RGD:7829802 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496
JBrowse link
G Il5 interleukin 5 treatment ISO RGD PMID:23934070 PMID:24620662 RGD:11354976, RGD:11522769 NCBI chr11:53,611,621...53,615,930
Ensembl chr11:53,611,621...53,615,933
JBrowse link
G Itgb2 integrin beta 2 treatment ISO RGD PMID:12046991 RGD:9698435 NCBI chr10:77,366,164...77,401,542
Ensembl chr10:77,366,086...77,401,542
JBrowse link
G Mrc1 mannose receptor, C type 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:36127783 NCBI chr 2:14,234,225...14,336,834
Ensembl chr 2:14,234,203...14,336,868
JBrowse link
G Muc1 mucin 1, transmembrane severity ISO mRNA,protein:decreased expression:nasal mucosa RGD PMID:31425778 PMID:31425778 PMID:31425778 RGD:127345100, RGD:127345100, RGD:127345100 NCBI chr 3:89,136,363...89,140,688
Ensembl chr 3:89,136,364...89,140,688
JBrowse link
G Muc5ac mucin 5, subtypes A and C, tracheobronchial/gastric ISO mRNA, protein:increased expression:nasal cavity epithelium RGD PMID:22972875 RGD:7364746 NCBI chr 7:141,342,695...141,372,964
Ensembl chr 7:141,342,709...141,372,968
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO mRNA:increased expression:nasal mucosa (human) RGD PMID:23858718 RGD:8547523 NCBI chr 8:89,373,943...89,415,103
Ensembl chr 8:89,373,943...89,415,102
JBrowse link
G Ocln occludin ISO CTD Direct Evidence: marker/mechanism CTD PMID:33441633 NCBI chr13:100,633,012...100,689,226
Ensembl chr13:100,633,015...100,689,226
JBrowse link
G Pon1 paraoxonase 1 severity ISO protein:decreased activity:plasma (human) RGD PMID:23406590 RGD:8547583 NCBI chr 6:5,168,101...5,193,824
Ensembl chr 6:5,168,090...5,193,946
JBrowse link
G Prkg1 protein kinase, cGMP-dependent, type I ISO protein:increased expression:nasal cavity epithelium RGD PMID:24012634 RGD:7775060 NCBI chr19:30,541,887...31,742,675
Ensembl chr19:30,541,889...31,742,433
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16979129 NCBI chr 1:149,975,851...149,983,978
Ensembl chr 1:149,975,782...149,983,978
JBrowse link
G Scgb1a1 secretoglobin, family 1A, member 1 IEP mRNA:decreased expression:nasal mucosa, lung RGD PMID:17882576 RGD:5144135 NCBI chr19:9,061,006...9,065,320
Ensembl chr19:9,061,000...9,065,322
JBrowse link
G Scgb3a2 secretoglobin, family 3A, member 2 susceptibility ISO DNA:SNP: :rs7726552 (human) RGD PMID:21410962 RGD:5144225 NCBI chr18:43,897,346...43,900,464
Ensembl chr18:43,897,354...43,900,464
JBrowse link
G Serpine1 serine (or cysteine) peptidase inhibitor, clade E, member 1 IEP mRNA:increased expression:nasal mucosa (mouse) RGD PMID:21339035 RGD:8547809 NCBI chr 5:137,090,358...137,101,126
Ensembl chr 5:137,090,358...137,101,122
JBrowse link
G Tacr1 tachykinin receptor 1 ISO mRNA:increased expression:nasal mucosa RGD PMID:12768696 RGD:5147835 NCBI chr 6:82,378,990...82,537,085
Ensembl chr 6:82,379,315...82,537,085
JBrowse link
G Tgfb1 transforming growth factor, beta 1 treatment ISO RGD PMID:31368266 RGD:14995445 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502
JBrowse link
G Tlr2 toll-like receptor 2 severity ISO
IDA
DNA:polymorphism:cds:p.R753Q(human)
protein:increased expression:neutrophil:
mRNA:decreased expression:nasal mucosa:
RGD PMID:22402138 PMID:22555057 PMID:18381801 PMID:18219831 RGD:7800732, RGD:8552993, RGD:8552972, RGD:7800742 NCBI chr 3:83,743,579...83,749,045
Ensembl chr 3:83,743,579...83,749,074
JBrowse link
G Tlr4 toll-like receptor 4 severity
treatment
susceptibility
no_association
ISO DNA:polymorphism:cds:p.D299G(human)
protein:increased expression:nasal lavage,leukocyte, bone marrow:
protein:decreased expression:nasal mucosa:
DNA:SNP: :rs1927911(human)
DNA:polymorphism: :4216G>C(human)
RGD PMID:22402138 PMID:22555057 PMID:22577387 PMID:17069098 PMID:23639307 More... RGD:7800732, RGD:8552993, RGD:7800740, RGD:7800738, RGD:7800736, RGD:4145354 NCBI chr 4:66,745,788...66,765,338
Ensembl chr 4:66,745,821...66,848,521
JBrowse link
G Tlr9 toll-like receptor 9 ISO protein:decreased expression:nasal mucosa: RGD PMID:22577387 RGD:7800740 NCBI chr 9:106,099,797...106,104,075
Ensembl chr 9:106,099,797...106,104,082
JBrowse link
Allergic Rhinoconjunctivitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2c38 cytochrome P450, family 2, subfamily c, polypeptide 38 treatment ISO associated with Eosinophilic Esophagitis; DNA:polymorphisms:: RGD PMID:26416193 RGD:11352743 NCBI chr19:39,379,109...39,451,519
Ensembl chr19:39,378,000...39,451,519
JBrowse link
G Cyp2c66 cytochrome P450, family 2, subfamily c, polypeptide 66 treatment ISO associated with Eosinophilic Esophagitis; DNA:polymorphisms:: RGD PMID:26416193 RGD:11352743 NCBI chr19:39,102,342...39,175,200
Ensembl chr19:39,102,342...39,175,516
JBrowse link
G Il3 interleukin 3 susceptibility ISO DNA:SNP: :rs40401(human) RGD PMID:23953855 RGD:13506915 NCBI chr11:54,155,911...54,158,105
Ensembl chr11:54,156,129...54,158,103
JBrowse link
aspergillosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end product-specific receptor ISO DNA:SNP:promoter:-374T>A (human) RGD PMID:22114731 RGD:8695981 NCBI chr17:34,816,545...34,819,911
Ensembl chr17:34,816,836...34,819,910
JBrowse link
G Ccl19 C-C motif chemokine ligand 19 IEP associated with Neutropenia;mRNA:increased expression:lung RGD PMID:19783686 RGD:5130908 NCBI chr 4:42,754,525...42,756,558
Ensembl chr 4:42,754,525...42,756,577
JBrowse link
G Ccr7 C-C motif chemokine receptor 7 IMP associated with Neutropenia RGD PMID:19783686 RGD:5130908 NCBI chr11:99,035,025...99,045,903
Ensembl chr11:99,035,022...99,045,903
JBrowse link
G Cd209d CD209d antigen ISO RGD PMID:21381282 RGD:5131183 NCBI chr 8:3,921,824...3,928,548
Ensembl chr 8:3,921,824...3,928,555
JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator severity IMP RGD PMID:22135344 RGD:35673332 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767
JBrowse link
G Clec1a C-type lectin domain family 1, member a susceptibility ISO ClinVar Annotator: match by term: Aspergillosis, susceptibility to
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
CTD
PMID:25741868 PMID:29489751 NCBI chr 6:129,403,647...129,428,963
Ensembl chr 6:129,401,735...129,428,963
JBrowse link
G Clec7a C-type lectin domain family 7, member a ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: CLEC7A-related condition
CTD
OMIM
ClinVar
PMID:19864674 PMID:20807886 PMID:24033266 PMID:25741868 PMID:28492532 NCBI chr 6:129,438,554...129,449,748
Ensembl chr 6:129,438,554...129,449,742
JBrowse link
G Crp C-reactive protein, pentraxin-related treatment ISO RGD PMID:20879853 RGD:9495929 NCBI chr 1:172,525,623...172,527,533
Ensembl chr 1:172,525,622...172,660,598
JBrowse link
G Il15 interleukin 15 ISO DNA:polymorphism (human) RGD PMID:16893395 RGD:4981337 NCBI chr 8:83,058,253...83,129,883
Ensembl chr 8:83,058,261...83,129,851
JBrowse link
G Mbl1 mannose-binding lectin (protein A) 1 susceptibility IMP RGD PMID:20064561 RGD:8694071 NCBI chr14:40,873,413...40,885,861
Ensembl chr14:40,873,415...40,881,558
JBrowse link
G Mbl2 mannose-binding lectin (protein C) 2 susceptibility IMP RGD PMID:20064561 RGD:8694071 NCBI chr19:30,210,306...30,217,087
Ensembl chr19:30,210,342...30,217,087
JBrowse link
G S100b S100 protein, beta polypeptide, neural ISO DNA:SNP: :427C>T (human) RGD PMID:22114731 RGD:8695981 NCBI chr10:76,089,670...76,097,153
Ensembl chr10:76,089,687...76,096,993
JBrowse link
G Tlr1 toll-like receptor 1 susceptibility ISO DNA:SNPs: :p.R80T, p.N248S (human) RGD PMID:16461792 RGD:4889535 NCBI chr 5:65,082,023...65,090,945
Ensembl chr 5:65,082,022...65,090,906
JBrowse link
G Tlr2 toll-like receptor 2 IEP mRNA:increased expression:lung RGD PMID:19781388 RGD:4145322 NCBI chr 3:83,743,579...83,749,045
Ensembl chr 3:83,743,579...83,749,074
JBrowse link
G Tlr6 toll-like receptor 6 susceptibility ISO DNA:SNP: :p.S249P (human) RGD PMID:16461792 RGD:4889535 NCBI chr 5:65,109,373...65,128,387
Ensembl chr 5:65,109,374...65,117,440
JBrowse link
aspiration pneumonia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ace angiotensin I converting enzyme ISO associated with Cerebrovascular Accident RGD PMID:14990394 RGD:4140926 NCBI chr11:105,858,774...105,880,790
Ensembl chr11:105,858,771...105,880,790
JBrowse link
G Cxcl1 C-X-C motif chemokine ligand 1 ISO RGD PMID:19515386 RGD:4891456 NCBI chr 5:91,039,104...91,040,980
Ensembl chr 5:91,039,100...91,040,974
JBrowse link
G Cxcl2 C-X-C motif chemokine ligand 2 ISO RGD PMID:19515386 RGD:4891456 NCBI chr 5:91,051,758...91,053,797
Ensembl chr 5:91,051,730...91,053,797
JBrowse link
G Edn1 endothelin 1 ISO protein:increased secretion:plasma (rat) RGD PMID:19262391 RGD:4145069 NCBI chr13:42,454,952...42,461,466
Ensembl chr13:42,454,952...42,461,466
JBrowse link
G Il1a interleukin 1 alpha ISO protein:increased expression:Bronchoalveolar Lavage Fluid RGD PMID:18042282 RGD:4142854 NCBI chr 2:129,141,530...129,151,892
Ensembl chr 2:129,141,530...129,151,892
JBrowse link
G Nos2 nitric oxide synthase 2, inducible ISO CTD Direct Evidence: marker/mechanism CTD PMID:15607125 NCBI chr11:78,811,613...78,851,052
Ensembl chr11:78,811,613...78,851,080
JBrowse link
G Tnf tumor necrosis factor ISO protein:increased expression:Bronchoalveolar Lavage Fluid RGD PMID:18042282 RGD:4142854 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
Bacterial Lung Diseases term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxcl15 C-X-C motif chemokine ligand 15 severity ISO protein:increased expression:nasal mucus (human) RGD PMID:24211414 RGD:40925940 NCBI chr 5:90,942,393...90,950,926
Ensembl chr 5:90,942,393...90,950,926
JBrowse link
G Marco macrophage receptor with collagenous structure disease_progression IMP association with Cryptococcal neoformans infection. RGD PMID:28298522 RGD:41412191 NCBI chr 1:120,402,267...120,432,753
Ensembl chr 1:120,402,267...120,432,753
JBrowse link
bacterial pneumonia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc1 ATP-binding cassette, sub-family C member 1 IMP RGD PMID:11238654 RGD:5128828 NCBI chr16:14,179,317...14,292,743
Ensembl chr16:14,179,422...14,293,601
JBrowse link
G Ace2 angiotensin converting enzyme 2 IEP associated with Pseudomonas Infections;mRNA, protein:altered expression, altered activity:lung (mouse) RGD PMID:31645418 RGD:40818279 NCBI chr  X:162,922,338...162,971,414
Ensembl chr  X:162,922,328...162,971,416
JBrowse link
G Ager advanced glycosylation end product-specific receptor severity IAGP RGD PMID:21629785 RGD:6767559 NCBI chr17:34,816,545...34,819,911
Ensembl chr17:34,816,836...34,819,910
JBrowse link
G C3 complement component 3 IMP RGD PMID:16014897 RGD:5129508 NCBI chr17:57,510,967...57,535,136
Ensembl chr17:57,510,970...57,535,136
JBrowse link
G C3ar1 complement component 3a receptor 1 IMP RGD PMID:16461429 RGD:5129690 NCBI chr 6:122,824,099...122,833,116
Ensembl chr 6:122,824,097...122,833,120
JBrowse link
G Cat catalase ISO RGD PMID:19842849 RGD:5130748 NCBI chr 2:103,284,249...103,315,498
Ensembl chr 2:103,284,194...103,315,505
JBrowse link
G Ccl19 C-C motif chemokine ligand 19 IEP mRNA, protein:increased expression:lung RGD PMID:20176793 RGD:5130918 NCBI chr 4:42,754,525...42,756,558
Ensembl chr 4:42,754,525...42,756,577
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IMP RGD PMID:20042590 RGD:4891443 NCBI chr11:81,926,403...81,928,278
Ensembl chr11:81,926,397...81,928,279
JBrowse link
G Ccl4 C-C motif chemokine ligand 4 IEP RGD PMID:20483921 RGD:5130905 NCBI chr11:83,553,410...83,555,509
Ensembl chr11:83,553,410...83,555,509
JBrowse link
G Ccr2 C-C motif chemokine receptor 2 IMP RGD PMID:20042590 RGD:4891443 NCBI chr 9:123,901,954...123,913,594
Ensembl chr 9:123,901,987...123,913,594
JBrowse link
G Ccr7 C-C motif chemokine receptor 7 IMP RGD PMID:20176793 RGD:5130918 NCBI chr11:99,035,025...99,045,903
Ensembl chr11:99,035,022...99,045,903
JBrowse link
G Cd14 CD14 antigen IMP RGD PMID:16210672 RGD:4144197 NCBI chr18:36,858,117...36,859,868
Ensembl chr18:36,858,120...36,859,851
JBrowse link
G Cd40 CD40 antigen IEP RGD PMID:20102413 RGD:5132268 NCBI chr 2:164,897,535...164,913,574
Ensembl chr 2:164,897,547...164,914,868
JBrowse link
G Cd80 CD80 antigen IEP RGD PMID:20949109 RGD:4892562 NCBI chr16:38,277,793...38,316,682
Ensembl chr16:38,275,923...38,316,697
JBrowse link
G Chuk conserved helix-loop-helix ubiquitous kinase IEP RGD PMID:18643924 RGD:5133701 NCBI chr19:44,061,773...44,095,940
Ensembl chr19:44,061,774...44,095,919
JBrowse link
G Csf3 colony stimulating factor 3 (granulocyte) disease_progression
treatment
ISO associated with Peritonitis; RGD PMID:21373266 PMID:12352049 RGD:5133733, RGD:11039437 NCBI chr11:98,591,287...98,594,457
Ensembl chr11:98,592,089...98,594,455
JBrowse link
G Csf3r colony stimulating factor 3 receptor disease_progression IMP RGD PMID:17185469 RGD:5133739 NCBI chr 4:125,917,241...125,938,233
Ensembl chr 4:125,918,343...125,938,233
JBrowse link
G Cxcl1 C-X-C motif chemokine ligand 1 IEP
ISO
RGD PMID:21723409 PMID:11052817 RGD:5135062, RGD:5135234 NCBI chr 5:91,039,104...91,040,980
Ensembl chr 5:91,039,100...91,040,974
JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 severity IMP
IEP
RGD PMID:16299319 PMID:15618188 RGD:5135458, RGD:5135459 NCBI chr 5:92,494,497...92,496,748
Ensembl chr 5:92,494,497...92,496,748
JBrowse link
G Cxcl11 chemokine (C-X-C motif) ligand 11 IEP RGD PMID:15618188 RGD:5135459 NCBI chr 5:92,507,403...92,511,155
Ensembl chr 5:92,507,403...92,513,344
JBrowse link
G Cxcl2 C-X-C motif chemokine ligand 2 severity IEP
ISO
RGD PMID:21723409 PMID:11052817 PMID:19239431 RGD:5135062, RGD:5135234, RGD:5135065 NCBI chr 5:91,051,758...91,053,797
Ensembl chr 5:91,051,730...91,053,797
JBrowse link
G Cxcl3 C-X-C motif chemokine ligand 3 ISO RGD PMID:11052817 RGD:5135234 NCBI chr 5:90,933,960...90,935,952
Ensembl chr 5:90,933,962...90,937,459
JBrowse link
G Cxcl5 C-X-C motif chemokine ligand 5 IEP RGD PMID:19846873 RGD:4145490 NCBI chr 5:90,907,157...90,909,484
Ensembl chr 5:90,907,219...90,909,483
JBrowse link
G Cxcl9 C-X-C motif chemokine ligand 9 IEP RGD PMID:15618188 RGD:5135459 NCBI chr 5:92,469,190...92,475,938
Ensembl chr 5:92,469,206...92,475,938
JBrowse link
G Cxcr3 C-X-C motif chemokine receptor 3 IMP RGD PMID:15618188 RGD:5135459 NCBI chr  X:100,775,141...100,777,753
Ensembl chr  X:100,775,141...100,777,875
JBrowse link
G Cyp2j6 cytochrome P450, family 2, subfamily j, polypeptide 6 ISO protein:decreased expression:lung RGD PMID:14766666 RGD:1625385 NCBI chr 4:96,404,375...96,449,835
Ensembl chr 4:96,404,375...96,441,898
JBrowse link
G Cyp2j9 cytochrome P450, family 2, subfamily j, polypeptide 9 ISO protein:decreased expression:lung RGD PMID:14766666 RGD:1625385 NCBI chr 4:96,456,661...96,480,748
Ensembl chr 4:96,456,666...96,479,815
JBrowse link
G Defb3 defensin beta 3 ISO protein:increased expression:plasma RGD PMID:10213993 RGD:4892266 NCBI chr 8:19,343,377...19,345,355
Ensembl chr 8:19,343,376...19,345,307
JBrowse link
G Defb4 defensin beta 4 ISO protein:increased expression:plasma RGD PMID:10213993 RGD:4892266 NCBI chr 8:19,248,720...19,251,563
Ensembl chr 8:19,248,722...19,251,561
JBrowse link
G F2 coagulation factor II ISO RGD PMID:21897338 RGD:6893486 NCBI chr 2:91,442,742...91,466,799
Ensembl chr 2:91,455,665...91,466,759
JBrowse link
G Fcgr3 Fc receptor, IgG, low affinity III IMP RGD PMID:17975174 RGD:5129707 NCBI chr 1:170,878,738...170,893,477
Ensembl chr 1:170,878,743...170,892,504
JBrowse link
G Foxp3 forkhead box P3 severity IEP RGD PMID:25398094 RGD:38501102 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G Gp1ba glycoprotein 1b, alpha polypeptide exacerbates IMP associated with Escherichia Coli Infections RGD PMID:27845343 RGD:42722624 NCBI chr11:70,529,928...70,534,812
Ensembl chr11:70,529,948...70,532,862
JBrowse link
G Grk2 G protein-coupled receptor kinase 2 ISO mRNA:decreased expression:polymorphonuclear leukocyte RGD PMID:24465168 RGD:126848796 NCBI chr19:4,336,029...4,356,356
Ensembl chr19:4,336,029...4,356,250
JBrowse link
G Hc hemolytic complement IMP RGD PMID:17975174 RGD:5129707 NCBI chr 2:34,873,341...34,958,518
Ensembl chr 2:34,873,343...34,951,450
JBrowse link
G Icam1 intercellular adhesion molecule 1 IEP protein:increased expression:lung (mouse) RGD PMID:19846873 RGD:4145490 NCBI chr 9:20,927,236...20,940,110
Ensembl chr 9:20,927,281...20,940,113
JBrowse link
G Ifnar1 interferon (alpha and beta) receptor 1 severity IMP RGD PMID:19487810 RGD:5490274 NCBI chr16:91,281,016...91,307,411
Ensembl chr16:91,282,126...91,304,329
JBrowse link
G Ifng interferon gamma severity IEP RGD PMID:25398094 RGD:38501102 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797
JBrowse link
G Il10 interleukin 10 severity IEP RGD PMID:25398094 RGD:38501102 NCBI chr 1:130,947,459...130,952,707
Ensembl chr 1:130,947,582...130,952,711
JBrowse link
G Il15 interleukin 15 IMP RGD PMID:17911627 RGD:5000754 NCBI chr 8:83,058,253...83,129,883
Ensembl chr 8:83,058,261...83,129,851
JBrowse link
G Il17a interleukin 17A severity IMP
IEP
RGD PMID:18802100 PMID:25398094 RGD:4889153, RGD:38501102 NCBI chr 1:20,801,129...20,804,720
Ensembl chr 1:20,801,129...20,804,720
JBrowse link
G Il18 interleukin 18 IMP RGD PMID:17664259 RGD:4889913 NCBI chr 9:50,466,000...50,493,141
Ensembl chr 9:50,466,127...50,493,140
JBrowse link
G Il1b interleukin 1 beta severity
treatment
IMP
IEP
ISO
associated with Agranulocytosis RGD PMID:18596024 PMID:25398094 PMID:7546648 RGD:4143205, RGD:38501102, RGD:10755357 NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059
JBrowse link
G Il1rl1 interleukin 1 receptor-like 1 treatment IMP
ISO
associated with Sepsis
associated with Acinetobacter infectious disease
RGD PMID:20959556 PMID:29508184 RGD:5144223, RGD:40818077 NCBI chr 1:40,444,105...40,504,575
Ensembl chr 1:40,468,730...40,504,575
JBrowse link
G Il1rn interleukin 1 receptor antagonist IMP RGD PMID:18322242 PMID:18596024 RGD:4143206, RGD:4143205 NCBI chr 2:24,226,872...24,241,503
Ensembl chr 2:24,226,865...24,241,506
JBrowse link
G Il22 interleukin 22 IMP RGD PMID:21178015 RGD:5147404 NCBI chr10:118,040,456...118,045,952
Ensembl chr10:118,040,847...118,045,952
JBrowse link
G Il6 interleukin 6 severity IEP RGD PMID:25398094 RGD:38501102 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979
JBrowse link
G Irak3 interleukin-1 receptor-associated kinase 3 IMP RGD PMID:28120642 PMID:20439918 RGD:34888234, RGD:36049799 NCBI chr10:119,977,553...120,038,035
Ensembl chr10:119,977,553...120,038,035
JBrowse link
G Irf1 interferon regulatory factor 1 IMP RGD PMID:11854220 RGD:5128725 NCBI chr11:53,660,841...53,669,200
Ensembl chr11:53,660,841...53,669,200
JBrowse link
G Irf3 interferon regulatory factor 3 IMP RGD PMID:20720199 RGD:4891951 NCBI chr 7:44,647,072...44,652,272
Ensembl chr 7:44,647,072...44,652,272
JBrowse link
G Itgb3 integrin beta 3 ISO protein:increased expression:lung, neutrophil RGD PMID:15114484 RGD:4993468 NCBI chr11:104,498,826...104,561,302
Ensembl chr11:104,498,826...104,561,302
JBrowse link
G Lep leptin IMP RGD PMID:11937559 RGD:5128871 NCBI chr 6:29,060,220...29,073,875
Ensembl chr 6:29,060,219...29,073,876
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 severity IMP associated with Escherichia Coli Infections RGD PMID:22514650 RGD:150340681 NCBI chr14:33,099,855...33,169,213
Ensembl chr14:33,099,855...33,169,115
JBrowse link
G Mbl2 mannose-binding lectin (protein C) 2 ISO Legionella Pneumonia; DNA:mutations:5' utr, exon:multiple (human) RGD PMID:18641104 RGD:4889477 NCBI chr19:30,210,306...30,217,087
Ensembl chr19:30,210,342...30,217,087
JBrowse link
G Mc1r melanocortin 1 receptor IMP RGD PMID:18304533 RGD:5687324 NCBI chr 8:124,133,839...124,137,483
Ensembl chr 8:124,133,846...124,137,483
JBrowse link
G Mmp9 matrix metallopeptidase 9 IMP
ISO
protein:increased expression:bronchoalveolar lavage fluid RGD PMID:17202364 PMID:19535150 RGD:5130727, RGD:5129533 NCBI chr 2:164,782,246...164,797,770
Ensembl chr 2:164,782,700...164,797,770
JBrowse link
G Mpo myeloperoxidase ISO protein:increased activity:bronchoalveolar lavage Fluid: RGD PMID:11269653 RGD:5130992 NCBI chr11:87,684,610...87,695,238
Ensembl chr11:87,684,407...87,695,239
JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 IMP RGD PMID:19360122 RGD:5131449 NCBI chr 6:54,900,927...54,949,655
Ensembl chr 6:54,900,934...54,949,597
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 IMP RGD PMID:19360122 RGD:5131449 NCBI chr 8:89,373,943...89,415,103
Ensembl chr 8:89,373,943...89,415,102
JBrowse link
G Pdpn podoplanin ISO protein:increased expression:lung RGD PMID:7864138 RGD:2292375 NCBI chr 4:142,993,979...143,026,134
Ensembl chr 4:142,994,001...143,026,134
JBrowse link
G Pecam1 platelet/endothelial cell adhesion molecule 1 ISO protein:decreased expression:lung RGD PMID:12524254 RGD:724645 NCBI chr11:106,545,039...106,606,107
Ensembl chr11:106,545,043...106,641,454
JBrowse link
G Pgf placental growth factor IEP protein:increased expression:plasma RGD PMID:16702604 RGD:6483601 NCBI chr12:85,213,413...85,224,087
Ensembl chr12:85,213,409...85,224,564
JBrowse link
G Pten phosphatase and tensin homolog ameliorates IMP myeloid knockout RGD PMID:21527775 RGD:127285594 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560
JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 ameliorates IMP RGD PMID:28387756 RGD:127229944 NCBI chr14:56,022,452...56,026,314
Ensembl chr14:56,022,452...56,026,322
JBrowse link
G Rorc RAR-related orphan receptor gamma severity IEP RGD PMID:25398094 RGD:38501102 NCBI chr 3:94,280,106...94,305,583
Ensembl chr 3:94,280,101...94,305,583
JBrowse link
G Serpine1 serine (or cysteine) peptidase inhibitor, clade E, member 1 severity IMP RGD PMID:17032919 RGD:4144840 NCBI chr 5:137,090,358...137,101,126
Ensembl chr 5:137,090,358...137,101,122
JBrowse link
G Sftpa1 surfactant associated protein A1 ISO protein:increased expression:lung RGD PMID:12169586 RGD:4143464 NCBI chr14:40,853,745...40,858,330
Ensembl chr14:40,853,739...40,858,409
JBrowse link
G Sftpb surfactant associated protein B ISO associated with Cystic Fibrosis;protein:increased expression:lung RGD PMID:15271694 PMID:12169586 RGD:4143403, RGD:4143464 NCBI chr 6:72,281,594...72,291,354
Ensembl chr 6:72,281,594...72,291,354
JBrowse link
G Sftpc surfactant associated protein C IMP
ISO
RGD PMID:18566429 PMID:12169586 RGD:4144114, RGD:4143464 NCBI chr14:70,758,381...70,761,521
Ensembl chr14:70,758,389...70,761,521
JBrowse link
G Sftpd surfactant associated protein D ISO associated with Cystic Fibrosis;protein:decreased expression:lung
protein:increased expression:lung
RGD PMID:15271694 PMID:12169586 RGD:4143403, RGD:4143464 NCBI chr14:40,894,169...40,907,155
Ensembl chr14:40,894,171...40,907,106
JBrowse link
G Stat3 signal transducer and activator of transcription 3 IMP RGD PMID:18192501 RGD:6892945 NCBI chr11:100,777,632...100,830,447
Ensembl chr11:100,775,924...100,830,366
JBrowse link
G Tgfb1 transforming growth factor, beta 1 severity IEP RGD PMID:25398094 RGD:38501102 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502
JBrowse link
G Tlr2 toll-like receptor 2 IMP
ISO
RGD PMID:18768871 PMID:19844782 RGD:4145337, RGD:4889533 NCBI chr 3:83,743,579...83,749,045
Ensembl chr 3:83,743,579...83,749,074
JBrowse link
G Tlr4 toll-like receptor 4 IMP RGD PMID:16210672 PMID:20650991 RGD:4144197, RGD:4144172 NCBI chr 4:66,745,788...66,765,338
Ensembl chr 4:66,745,821...66,848,521
JBrowse link
G Tlr5 toll-like receptor 5 IMP RGD PMID:19801452 RGD:5129503 NCBI chr 1:182,782,317...182,804,010
Ensembl chr 1:182,782,353...182,804,010
JBrowse link
G Tlr6 toll-like receptor 6 ISO RGD PMID:19844782 RGD:4889533 NCBI chr 5:65,109,373...65,128,387
Ensembl chr 5:65,109,374...65,117,440
JBrowse link
G Tlr9 toll-like receptor 9 IMP RGD PMID:20360853 RGD:5130719 NCBI chr 9:106,099,797...106,104,075
Ensembl chr 9:106,099,797...106,104,082
JBrowse link
G Tnf tumor necrosis factor disease_progression
treatment
severity
ISO
IMP
associated with Agranulocytosis RGD PMID:10650487 PMID:7546648 PMID:9310939 PMID:12958055 RGD:4143476, RGD:10755357, RGD:10450564, RGD:10449451 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a IEP protein:increased expression:serum (mouse) RGD PMID:19842848 RGD:5131429 NCBI chr 6:125,326,686...125,339,446
Ensembl chr 6:125,326,325...125,339,447
JBrowse link
G Tnfrsf1b tumor necrosis factor receptor superfamily, member 1b IEP protein:increased expression:serum (mouse) RGD PMID:19842848 RGD:5131429 NCBI chr 4:144,938,938...144,973,453
Ensembl chr 4:144,940,033...144,973,440
JBrowse link
G Trem1 triggering receptor expressed on myeloid cells 1 severity
ameliorates
ISO RGD PMID:24465168 PMID:16960786 PMID:22996209 RGD:126848796, RGD:127229902, RGD:126925987 NCBI chr17:48,539,763...48,553,955
Ensembl chr17:48,539,796...48,553,952
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A IMP associated with Pseudomonas Infections RGD PMID:29695841 RGD:39938967 NCBI chr 4:125,012,207...125,021,674
Ensembl chr 4:125,012,216...125,021,633
JBrowse link
bronchiolitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenergic receptor, beta 2 ISO RGD PMID:17687719 RGD:4145098 NCBI chr18:62,310,784...62,313,052
Ensembl chr18:62,310,887...62,313,030
JBrowse link
G Ccl11 C-C motif chemokine ligand 11 severity ISO
IMP
protein:increased expression:nasal mucus
associated with Respiratory Syncytial Virus Infections
RGD PMID:17297249 PMID:15681407 RGD:4145460, RGD:4145415 NCBI chr11:81,948,658...81,953,781
Ensembl chr11:81,948,649...81,953,781
JBrowse link
G Cd40 CD40 antigen ISO RGD PMID:19470255 RGD:5132271 NCBI chr 2:164,897,535...164,913,574
Ensembl chr 2:164,897,547...164,914,868
JBrowse link
G Cd86 CD86 antigen IEP protein:decreased expression:myeloid dendritic cell (mouse) RGD PMID:20046053 RGD:4892291 NCBI chr16:36,389,318...36,486,439
Ensembl chr16:36,424,231...36,486,443
JBrowse link
G Crp C-reactive protein, pentraxin-related severity ISO RGD PMID:21284715 RGD:5131282 NCBI chr 1:172,525,623...172,527,533
Ensembl chr 1:172,525,622...172,660,598
JBrowse link
G Cysltr1 cysteinyl leukotriene receptor 1 IMP associated with Pneumovirus Infections RGD PMID:16337014 RGD:4843953 NCBI chr  X:105,617,952...105,647,329
Ensembl chr  X:105,617,952...105,647,285
JBrowse link
G Il17a interleukin 17A susceptibility ISO DNA:SNP:promoter:rs2275913 (human) RGD PMID:20437253 RGD:4889139 NCBI chr 1:20,801,129...20,804,720
Ensembl chr 1:20,801,129...20,804,720
JBrowse link
G Il1b interleukin 1 beta ISO protein:increased expression:lung RGD PMID:8608647 RGD:4143192 NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059
JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO protein:increased expression:lung RGD PMID:8608647 RGD:4143192 NCBI chr 2:24,226,872...24,241,503
Ensembl chr 2:24,226,865...24,241,506
JBrowse link
G Muc5b mucin 5, subtype B, tracheobronchial ISO DNA:polymorphisms:promoter:rs885454,rs17235353, rs7115457 (human) RGD PMID:15709052 RGD:7349353 NCBI chr 7:141,392,796...141,426,826
Ensembl chr 7:141,392,807...141,426,821
JBrowse link
bronchiolitis obliterans term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ace angiotensin I converting enzyme ISO RGD PMID:17097496 RGD:4140933 NCBI chr11:105,858,774...105,880,790
Ensembl chr11:105,858,771...105,880,790
JBrowse link
G Adora2a adenosine A2a receptor IMP RGD PMID:19766783 RGD:4890362 NCBI chr10:75,152,711...75,170,626
Ensembl chr10:75,152,711...75,170,618
JBrowse link
G Ccl17 C-C motif chemokine ligand 17 ISO RGD PMID:18785972 RGD:4145604 NCBI chr 8:95,535,996...95,538,666
Ensembl chr 8:95,537,081...95,538,664
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 ISO RGD PMID:14611812 RGD:2307195 NCBI chr11:81,926,403...81,928,278
Ensembl chr11:81,926,397...81,928,279
JBrowse link
G Ccl22 C-C motif chemokine ligand 22 ISO RGD PMID:20628341 RGD:4891471 NCBI chr 8:95,472,312...95,478,016
Ensembl chr 8:95,472,218...95,478,327
JBrowse link
G Ccl5 C-C motif chemokine ligand 5 ISO mRNA:increased expression:lung (rat) RGD PMID:19840961 PMID:14611812 RGD:4889978, RGD:2307195 NCBI chr11:83,416,604...83,421,344
Ensembl chr11:83,416,604...83,421,344
JBrowse link
G Ccl7 C-C motif chemokine ligand 7 ISO protein:increased expression:bronchoalveolar Lavage fluid RGD PMID:22215510 RGD:6483763 NCBI chr11:81,936,538...81,938,351
Ensembl chr11:81,936,538...81,938,351
JBrowse link
G Ccr2 C-C motif chemokine receptor 2 IEP mRNA:increased expression:trachea: RGD PMID:11518728 RGD:4145124 NCBI chr 9:123,901,954...123,913,594
Ensembl chr 9:123,901,987...123,913,594
JBrowse link
G Cd86 CD86 antigen ISO RGD PMID:11266944 RGD:2307206 NCBI chr16:36,389,318...36,486,439
Ensembl chr16:36,424,231...36,486,443
JBrowse link
G Csf2 colony stimulating factor 2 (granulocyte-macrophage) ISO associated with Respiratory Aspiration;protein:increased expression:serum RGD PMID:18557728 RGD:2317286 NCBI chr11:54,138,096...54,140,725
Ensembl chr11:54,138,097...54,140,493
JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 IEP
ISO
IMP
protein:increased expression:respiratory system fluid/secretion RGD PMID:16709871 PMID:12097412 PMID:12097412 RGD:5135441, RGD:5135451, RGD:5135451 NCBI chr 5:92,494,497...92,496,748
Ensembl chr 5:92,494,497...92,496,748
JBrowse link
G Cxcl11 chemokine (C-X-C motif) ligand 11 IEP
ISO
protein:increased expression:respiratory system fluid/secretion RGD PMID:12097412 PMID:12097412 RGD:5135451, RGD:5135451 NCBI chr 5:92,507,403...92,511,155
Ensembl chr 5:92,507,403...92,513,344
JBrowse link
G Cxcl9 C-X-C motif chemokine ligand 9 IEP
ISO
IMP
protein:increased expression:respiratory system fluid/secretion RGD PMID:16709871 PMID:12097412 PMID:12097412 RGD:5135441, RGD:5135451, RGD:5135451 NCBI chr 5:92,469,190...92,475,938
Ensembl chr 5:92,469,206...92,475,938
JBrowse link
G Cxcr3 C-X-C motif chemokine receptor 3 IMP RGD PMID:16709871 PMID:12097412 RGD:5135441, RGD:5135451 NCBI chr  X:100,775,141...100,777,753
Ensembl chr  X:100,775,141...100,777,875
JBrowse link
G Edn1 endothelin 1 ISO human gene in a rat model RGD PMID:9595474 RGD:8662402 NCBI chr13:42,454,952...42,461,466
Ensembl chr13:42,454,952...42,461,466
JBrowse link
G Foxp3 forkhead box P3 ISO mRNA:increased expression:lung RGD PMID:19840961 RGD:4889978 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G Gzmb granzyme B ISO RGD PMID:19737140 RGD:5135518 NCBI chr14:56,496,293...56,499,791
Ensembl chr14:56,496,295...56,499,717
JBrowse link
G Hmox1 heme oxygenase 1 IMP RGD PMID:12973103 RGD:4145412 NCBI chr 8:75,820,246...75,827,221
Ensembl chr 8:75,820,249...75,827,217
JBrowse link
G Ifng interferon gamma ISO CTD Direct Evidence: therapeutic CTD PMID:16137903 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797
JBrowse link
G Il13 interleukin 13 IMP
ISO
RGD PMID:17182591 PMID:17182591 RGD:4146242, RGD:4146242 NCBI chr11:53,522,150...53,525,529
Ensembl chr11:53,522,151...53,525,529
JBrowse link
G Il13ra1 interleukin 13 receptor, alpha 1 IEP RGD PMID:17182591 RGD:4146242 NCBI chr  X:35,375,761...35,434,915
Ensembl chr  X:35,375,763...35,434,912
JBrowse link
G Il13ra2 interleukin 13 receptor, alpha 2 IMP RGD PMID:17182591 RGD:4146242 NCBI chr  X:146,166,474...146,214,982
Ensembl chr  X:146,166,472...146,212,188
JBrowse link
G Il17a interleukin 17A IEP mRNA:increased expression:trachea RGD PMID:20393404 RGD:4143277 NCBI chr 1:20,801,129...20,804,720
Ensembl chr 1:20,801,129...20,804,720
JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO protein:increased expression:lung RGD PMID:11889437 RGD:4143176 NCBI chr 2:24,226,872...24,241,503
Ensembl chr 2:24,226,865...24,241,506
JBrowse link
G Il4 interleukin 4 ISO protein:increased expression:serum RGD PMID:18557728 RGD:2317286 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496
JBrowse link
G Il6 interleukin 6 IEP RGD PMID:20393404 RGD:4143277 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979
JBrowse link
G Mbl2 mannose-binding lectin (protein C) 2 resistance ISO DNA:transversion:5' utr:-290C>G rs7096206 (human) RGD PMID:19104434 RGD:4889456 NCBI chr19:30,210,306...30,217,087
Ensembl chr19:30,210,342...30,217,087
JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO protein:increased expression, increased activity:bronchoalveolar lavage fluid RGD PMID:20417130 RGD:5130759 NCBI chr 2:164,782,246...164,797,770
Ensembl chr 2:164,782,700...164,797,770
JBrowse link
G Muc1 mucin 1, transmembrane ISO protein:increased expression:serum RGD PMID:16969297 RGD:5131273 NCBI chr 3:89,136,363...89,140,688
Ensembl chr 3:89,136,364...89,140,688
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO RGD PMID:18158963 RGD:5131450 NCBI chr 8:89,373,943...89,415,103
Ensembl chr 8:89,373,943...89,415,102
JBrowse link
G Nos2 nitric oxide synthase 2, inducible ISO associated with lung transplantation; protein:increased expression:lung RGD PMID:11112135 RGD:4892082 NCBI chr11:78,811,613...78,851,052
Ensembl chr11:78,811,613...78,851,080
JBrowse link
G Nos3 nitric oxide synthase 3, endothelial cell ISO protein:increased expression:lung RGD PMID:15136885 RGD:4892068 NCBI chr 5:24,569,772...24,589,472
Ensembl chr 5:24,569,808...24,589,472
JBrowse link
G Scgb1a1 secretoglobin, family 1A, member 1 ISO associated with lung transplantation; protein:decreased expression:serum,bronchoalveolar lavage RGD PMID:11981419 RGD:5147386 NCBI chr19:9,061,006...9,065,320
Ensembl chr19:9,061,000...9,065,322
JBrowse link
G Sftpd surfactant associated protein D ISO RGD PMID:18347569 RGD:4143500 NCBI chr14:40,894,169...40,907,155
Ensembl chr14:40,894,171...40,907,106
JBrowse link
G Tlr9 toll-like receptor 9 ISO DNA:SNPs:promoter, 3' utr:g.-1485C>T (rs187084), rs352162 (human) RGD PMID:20227302 RGD:5130722 NCBI chr 9:106,099,797...106,104,075
Ensembl chr 9:106,099,797...106,104,082
JBrowse link
bronchitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 ISO DNA:polymorphism (human) RGD PMID:14593914 RGD:4889126 NCBI chr 9:57,595,211...57,611,107
Ensembl chr 9:57,595,211...57,611,107
JBrowse link
G Egr1 early growth response 1 IMP RGD PMID:17384085 RGD:5132266 NCBI chr18:34,994,260...34,998,009
Ensembl chr18:34,992,876...34,998,037
JBrowse link
G Hdac2 histone deacetylase 2 treatment ISO RGD PMID:22708526 RGD:9590258 NCBI chr10:36,850,293...36,877,885
Ensembl chr10:36,850,540...36,877,885
JBrowse link
G Ifng interferon gamma resistance IDA RGD PMID:20953328 RGD:4145525 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797
JBrowse link
bronchopneumonia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl5 C-C motif chemokine ligand 5 ISO protein:increased secretion:serum (human) RGD PMID:20350425 RGD:4892019 NCBI chr11:83,416,604...83,421,344
Ensembl chr11:83,416,604...83,421,344
JBrowse link
G Cxcr2 C-X-C motif chemokine receptor 2 disease_progression IMP associated with Plague RGD PMID:21356370 RGD:5134954 NCBI chr 1:74,193,153...74,200,405
Ensembl chr 1:74,193,150...74,200,405
JBrowse link
G Mbl2 mannose-binding lectin (protein C) 2 ISO associated with Down Syndrome; protein:decreased secretion:serum (human) RGD PMID:19804807 RGD:4889483 NCBI chr19:30,210,306...30,217,087
Ensembl chr19:30,210,342...30,217,087
JBrowse link
Chlamydia pneumonia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd274 CD274 antigen IEP mRNA:increased expression:lung RGD PMID:26378990 RGD:41412180 NCBI chr19:29,339,428...29,365,495
Ensembl chr19:29,344,855...29,365,495
JBrowse link
G Pdcd1 programmed cell death 1 IEP mRNA:increased expression:lung RGD PMID:26378990 RGD:41412180 NCBI chr 1:93,966,027...93,980,278
Ensembl chr 1:93,966,027...93,980,278
JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta severity IMP RGD PMID:29893841 RGD:40890270 NCBI chr 4:149,733,625...149,787,023
Ensembl chr 4:149,733,625...149,787,028
JBrowse link
Chronic Bronchitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl11 C-C motif chemokine ligand 11 ISO RGD PMID:11991282 RGD:4145442 NCBI chr11:81,948,658...81,953,781
Ensembl chr11:81,948,649...81,953,781
JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator susceptibility ISO DNA:deletion: :F508del(human)
associated with pulmonary disease chronic obstructive; DNA:missense mutation:exon:p.R75Q(human)
RGD PMID:10767489 PMID:15463907 RGD:4140484, RGD:4140475 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767
JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 ISO DNA:SNPs: :multiple (human) RGD PMID:19386687 RGD:4891509 NCBI chr 1:60,948,184...60,954,991
Ensembl chr 1:60,926,159...60,954,991
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 susceptibility ISO DNA:polymorphism (human) RGD PMID:15928955 RGD:4142512 NCBI chr 9:57,595,211...57,611,107
Ensembl chr 9:57,595,211...57,611,107
JBrowse link
G Cyp2e1 cytochrome P450, family 2, subfamily e, polypeptide 1 ISO DNA:polymorphism (human) RGD PMID:14593914 RGD:4889126 NCBI chr 7:140,343,732...140,354,903
Ensembl chr 7:140,343,652...140,354,900
JBrowse link
G Edn1 endothelin 1 IEP Chronic Allergic Airway Inflammation; protein:increased secretion:bronchoalveolar lavage (mouse) RGD PMID:18631350 RGD:4145074 NCBI chr13:42,454,952...42,461,466
Ensembl chr13:42,454,952...42,461,466
JBrowse link
G Gc vitamin D binding protein susceptibility ISO RGD PMID:12096683 RGD:5129516 NCBI chr 5:89,565,370...89,605,757
Ensembl chr 5:89,565,381...89,605,757
JBrowse link
G Gstm1 glutathione S-transferase, mu 1 severity ISO DNA:deletion: :
DNA:deletion, haplotype: : (human)
RGD PMID:9187680 PMID:15125256 RGD:4142513, RGD:12798508 NCBI chr 3:107,919,566...107,925,289
Ensembl chr 3:107,919,571...107,925,289
JBrowse link
G Gstt1 glutathione S-transferase, theta 1 susceptibility ISO DNA:deletion: : RGD PMID:15928955 RGD:4142512 NCBI chr10:75,619,647...75,634,418
Ensembl chr10:75,619,647...75,634,418
JBrowse link
G Icam1 intercellular adhesion molecule 1 ISO protein:increased expression:bronchial epithelium (rat) RGD PMID:19507274 RGD:2308951 NCBI chr 9:20,927,236...20,940,110
Ensembl chr 9:20,927,281...20,940,113
JBrowse link
G Il10 interleukin 10 ISO protein:decreased expression:lung RGD PMID:19507274 RGD:2308951 NCBI chr 1:130,947,459...130,952,707
Ensembl chr 1:130,947,582...130,952,711
JBrowse link
G Il13 interleukin 13 ISO protein:increased expression:Respiratory Mucosa RGD PMID:14582911 RGD:4759835 NCBI chr11:53,522,150...53,525,529
Ensembl chr11:53,522,151...53,525,529
JBrowse link
G Il15 interleukin 15 ISO mRNA, protein:increased expression:lung RGD PMID:11742275 RGD:4990461 NCBI chr 8:83,058,253...83,129,883
Ensembl chr 8:83,058,261...83,129,851
JBrowse link
G Mpo myeloperoxidase ISO protein:increased expression:lung RGD PMID:11798689 RGD:5130990 NCBI chr11:87,684,610...87,695,238
Ensembl chr11:87,684,407...87,695,239
JBrowse link
G Nos2 nitric oxide synthase 2, inducible ISO RGD PMID:19938219 RGD:4891494 NCBI chr11:78,811,613...78,851,052
Ensembl chr11:78,811,613...78,851,080
JBrowse link
G Npy neuropeptide Y ISO CTD Direct Evidence: marker/mechanism CTD PMID:9731035 NCBI chr 6:49,799,690...49,806,487
Ensembl chr 6:49,799,690...49,806,487
JBrowse link
G Vegfa vascular endothelial growth factor A ISO CTD Direct Evidence: marker/mechanism CTD PMID:19263519 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295
JBrowse link
chronic rhinitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edn1 endothelin 1 ISO protein:increased expression:inferior turbinate, nasal gland, inflammatory cell (human) RGD PMID:8845175 RGD:8661738 NCBI chr13:42,454,952...42,461,466
Ensembl chr13:42,454,952...42,461,466
JBrowse link
Chronic Rhinosinusitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd8a CD8 subunit alpha ameliorates ISO protein:decreased expression:blood, T cell (human) RGD PMID:24639246 RGD:124715444 NCBI chr 6:71,350,411...71,356,155
Ensembl chr 6:71,350,411...71,356,157
JBrowse link
G Il17a interleukin 17A ISO protein:increased expression:uncinate process, nasal mucosa (human) RGD PMID:23613503 RGD:8696039 NCBI chr 1:20,801,129...20,804,720
Ensembl chr 1:20,801,129...20,804,720
JBrowse link
G Il1rn interleukin 1 receptor antagonist susceptibility ISO DNA:repeats:intron:IVS2+914_1000dup I/II alleles (human) RGD PMID:16549749 RGD:8549791 NCBI chr 2:24,226,872...24,241,503
Ensembl chr 2:24,226,865...24,241,506
JBrowse link
G Mbl2 mannose-binding lectin (protein C) 2 ISO protein:decreased activity:serum: RGD PMID:23144819 RGD:8693716 NCBI chr19:30,210,306...30,217,087
Ensembl chr19:30,210,342...30,217,087
JBrowse link
G Prg2 proteoglycan 2, bone marrow disease_progression ISO associated with Nasal Polyps; RGD PMID:24450586 RGD:13506943 NCBI chr 2:84,810,805...84,813,977
Ensembl chr 2:84,810,805...84,813,976
JBrowse link
common cold term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox5 arachidonate 5-lipoxygenase ISO protein:increased expression:bronchus RGD PMID:11865407 RGD:4890421 NCBI chr 6:116,387,030...116,438,139
Ensembl chr 6:116,387,038...116,438,139
JBrowse link
G Alox5ap arachidonate 5-lipoxygenase activating protein ISO protein:increased expression:bronchus RGD PMID:11865407 RGD:4890421 NCBI chr 5:149,201,814...149,224,963
Ensembl chr 5:149,201,577...149,224,963
JBrowse link
G Cx3cl1 C-X3-C motif chemokine ligand 1 ISO RGD PMID:20696083 RGD:4140458 NCBI chr 8:95,498,808...95,509,055
Ensembl chr 8:95,498,637...95,509,055
JBrowse link
G Cxcl1 C-X-C motif chemokine ligand 1 ISO associated with Pulmonary Disease, Chronic Obstructive;protein:increased expression:respiratory epithelial cell RGD PMID:20395558 RGD:4145446 NCBI chr 5:91,039,104...91,040,980
Ensembl chr 5:91,039,100...91,040,974
JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 ISO protein:increased expression:respiratory system fluid/secretion RGD PMID:15764644 RGD:5135489 NCBI chr 5:92,494,497...92,496,748
Ensembl chr 5:92,494,497...92,496,748
JBrowse link
G Cxcl15 C-X-C motif chemokine ligand 15 treatment ISO RGD PMID:28343401 RGD:150521550 NCBI chr 5:90,942,393...90,950,926
Ensembl chr 5:90,942,393...90,950,926
JBrowse link
G Cxcl3 C-X-C motif chemokine ligand 3 ISO associated with Pulmonary Disease, Chronic Obstructive;protein:increased expression:respiratory epithelial cell RGD PMID:20395558 RGD:4145446 NCBI chr 5:90,933,960...90,935,952
Ensembl chr 5:90,933,962...90,937,459
JBrowse link
G Cxcl5 C-X-C motif chemokine ligand 5 ISO associated with Asthma RGD PMID:12751040 RGD:5135264 NCBI chr 5:90,907,157...90,909,484
Ensembl chr 5:90,907,219...90,909,483
JBrowse link
G Cxcr2 C-X-C motif chemokine receptor 2 IMP RGD PMID:19864593 RGD:5131210 NCBI chr 1:74,193,153...74,200,405
Ensembl chr 1:74,193,150...74,200,405
JBrowse link
G Defb3 defensin beta 3 ISO mRNA, protein:increased expression:nasal cavity epithelium, nasal mucus RGD PMID:15034083 RGD:4892264 NCBI chr 8:19,343,377...19,345,355
Ensembl chr 8:19,343,376...19,345,307
JBrowse link
G Defb4 defensin beta 4 ISO mRNA, protein:increased expression:nasal cavity epithelium, nasal mucus RGD PMID:15034083 RGD:4892264 NCBI chr 8:19,248,720...19,251,563
Ensembl chr 8:19,248,722...19,251,561
JBrowse link
G Ifna2 interferon alpha 2 treatment ISO RGD PMID:6381610 RGD:40886344 NCBI chr 4:88,601,444...88,602,016
Ensembl chr 4:88,601,118...88,602,149
JBrowse link
G Il10 interleukin 10 ISO RGD PMID:20696083 RGD:4140458 NCBI chr 1:130,947,459...130,952,707
Ensembl chr 1:130,947,582...130,952,711
JBrowse link
G Il1a interleukin 1 alpha ISO protein:increased expression:nasal mucus RGD PMID:10358201 RGD:4143183 NCBI chr 2:129,141,530...129,151,892
Ensembl chr 2:129,141,530...129,151,892
JBrowse link
G Il1b interleukin 1 beta ISO protein:increased expression:nasal mucus RGD PMID:7734976 RGD:7401200 NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059
JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO protein:increased expression:nasal mucus RGD PMID:18279051 PMID:10358201 RGD:4143207, RGD:4143183 NCBI chr 2:24,226,872...24,241,503
Ensembl chr 2:24,226,865...24,241,506
JBrowse link
G Il33 interleukin 33 ISO protein:increased expression:nasal mucus RGD PMID:28471975 RGD:38596342 NCBI chr19:29,902,513...29,938,118
Ensembl chr19:29,902,514...29,938,118
JBrowse link
G Il4 interleukin 4 IEP associated with Asthma;mRNA, protein:increased expression:alveolar macrophage, respiratory system fluid/secretion RGD PMID:20644177 RGD:4140459 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496
JBrowse link
G Prdx5 peroxiredoxin 5 ISO associated with asthma;protein:increased expression:sputum (human) RGD PMID:18219526 RGD:41404684 NCBI chr19:6,884,065...6,887,474
Ensembl chr19:6,884,065...6,887,474
JBrowse link
G Tslp thymic stromal lymphopoietin ISO protein:increased expression:nasal mucus (human) RGD PMID:28471975 RGD:38596342 NCBI chr18:32,948,436...32,952,852
Ensembl chr18:32,948,436...32,952,850
JBrowse link
cryptogenic organizing pneumonia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a ISO protein:increased expression:lung, macrophage (human) RGD PMID:21144722 RGD:5131112 NCBI chr 6:125,326,686...125,339,446
Ensembl chr 6:125,326,325...125,339,447
JBrowse link
G Tnfrsf1b tumor necrosis factor receptor superfamily, member 1b ISO protein:increased expression:lung, lymphocyte (human) RGD PMID:21144722 RGD:5131112 NCBI chr 4:144,938,938...144,973,453
Ensembl chr 4:144,940,033...144,973,440
JBrowse link
desquamative interstitial pneumonia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sftpc surfactant associated protein C IAGP OMIM:263000 MouseDO NCBI chr14:70,758,381...70,761,521
Ensembl chr14:70,758,389...70,761,521
JBrowse link
Diffuse Panbronchiolitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2-M2 histocompatibility 2, M region locus 2 susceptibility ISO DNA:polymorphism:cds:HLA-B*5401 (human) RGD PMID:9731015 RGD:1331522 NCBI chr17:37,791,742...37,794,445
Ensembl chr17:37,791,742...37,794,443
JBrowse link
G Mbl2 mannose-binding lectin (protein C) 2 susceptibility ISO DNA:SNP:exon:p.G54D(rs1800450)(human) RGD PMID:15249448 RGD:8693755 NCBI chr19:30,210,306...30,217,087
Ensembl chr19:30,210,342...30,217,087
JBrowse link
G Muc5ac mucin 5, subtypes A and C, tracheobronchial/gastric ISO protein:decreased expression:bronchiole epithelium RGD PMID:15364771 RGD:7364741 NCBI chr 7:141,342,695...141,372,964
Ensembl chr 7:141,342,709...141,372,968
JBrowse link
G Muc5b mucin 5, subtype B, tracheobronchial ISO DNA:insertion/deletion RGD PMID:15709052 RGD:7349353 NCBI chr 7:141,392,796...141,426,826
Ensembl chr 7:141,392,807...141,426,821
JBrowse link
G Mucl3 mucin like 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22152429 NCBI chr17:35,946,647...35,954,587
Ensembl chr17:35,946,644...35,954,587
JBrowse link
G Tap2 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) susceptibility ISO DNA:polymorphisms:exon: RGD PMID:10323341 RGD:5147847 NCBI chr17:34,423,453...34,435,295
Ensembl chr17:34,422,501...34,435,295
JBrowse link
ethmoid sinusitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl7 C-C motif chemokine ligand 7 ISO protein:increased expression:ethmoid sinus RGD PMID:9800627 RGD:6483785 NCBI chr11:81,936,538...81,938,351
Ensembl chr11:81,936,538...81,938,351
JBrowse link
Fungal Lung Diseases term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl7 C-C motif chemokine ligand 7 IEP RGD PMID:20045013 RGD:5129686 NCBI chr11:81,936,538...81,938,351
Ensembl chr11:81,936,538...81,938,351
JBrowse link
G Gata2 GATA binding protein 2 ISO associated with Pneumocystis Infections RGD PMID:16774119 RGD:9587813 NCBI chr 6:88,170,873...88,184,014
Ensembl chr 6:88,170,873...88,184,014
JBrowse link
G Hc hemolytic complement IAGP RGD PMID:2612053 RGD:5130160 NCBI chr 2:34,873,341...34,958,518
Ensembl chr 2:34,873,343...34,951,450
JBrowse link
G Il13 interleukin 13 IEP
ISO
protein:increased expression:lung RGD PMID:19752036 PMID:16544260 RGD:4145474, RGD:4145506 NCBI chr11:53,522,150...53,525,529
Ensembl chr11:53,522,151...53,525,529
JBrowse link
G Il33 interleukin 33 IEP protein:increased expression:lung RGD PMID:25746970 RGD:39938968 NCBI chr19:29,902,513...29,938,118
Ensembl chr19:29,902,514...29,938,118
JBrowse link
G Nos2 nitric oxide synthase 2, inducible ISO protein:decreased expression:lung RGD PMID:10639453 RGD:4891455 NCBI chr11:78,811,613...78,851,052
Ensembl chr11:78,811,613...78,851,080
JBrowse link
G Sftpa1 surfactant associated protein A1 susceptibility IMP RGD PMID:20413160 RGD:4143489 NCBI chr14:40,853,745...40,858,330
Ensembl chr14:40,853,739...40,858,409
JBrowse link
G Sftpd surfactant associated protein D susceptibility IMP
ISO
RGD PMID:20413160 PMID:20413160 RGD:4143489, RGD:4143489 NCBI chr14:40,894,169...40,907,155
Ensembl chr14:40,894,171...40,907,106
JBrowse link
G Tnf tumor necrosis factor ISO protein:increased expression:lung RGD PMID:16544260 RGD:4145506 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
Human Influenza term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abo ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase susceptibility ISO DNA:polymorphism:cds:allele AB (human) RGD PMID:6189297 PMID:4375858 RGD:5128836, RGD:39938844 NCBI chr 2:26,732,508...26,754,973
Ensembl chr 2:26,732,515...26,754,991
JBrowse link
G Apol6 apolipoprotein L 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr15:76,929,195...76,941,308
Ensembl chr15:76,928,929...76,941,306
JBrowse link
G Atf3 activating transcription factor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 1:190,902,493...190,915,530
Ensembl chr 1:190,902,493...190,950,236
JBrowse link
G C3 complement component 3 IMP RGD PMID:21408070 RGD:5129492 NCBI chr17:57,510,967...57,535,136
Ensembl chr17:57,510,970...57,535,136
JBrowse link
G Casp1 caspase 1 IMP RGD PMID:19362023 RGD:5130181 NCBI chr 9:5,298,517...5,307,281
Ensembl chr 9:5,298,508...5,307,290
JBrowse link
G Cat catalase IDA
ISO
RGD PMID:20653246 PMID:16804020 PMID:19959187 RGD:5130201, RGD:5130864, RGD:5130744 NCBI chr 2:103,284,249...103,315,498
Ensembl chr 2:103,284,194...103,315,505
JBrowse link
G Ccl11 C-C motif chemokine ligand 11 IEP associated with Asthma;protein:increased expression:respiratory system fluid/secretion RGD PMID:12707338 PMID:20656925 RGD:4145439, RGD:4145452 NCBI chr11:81,948,658...81,953,781
Ensembl chr11:81,948,649...81,953,781
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IEP
ISO
mRNA:increased expression:lung
CTD Direct Evidence: marker/mechanism
CTD
RGD
PMID:23326326 PMID:20967263 RGD:4891425 NCBI chr11:81,926,403...81,928,278
Ensembl chr11:81,926,397...81,928,279
JBrowse link
G Ccl28 C-C motif chemokine ligand 28 resistance IMP RGD PMID:19847203 RGD:4892196 NCBI chr13:120,085,355...120,115,895
Ensembl chr13:120,085,355...120,115,895
JBrowse link
G Ccl5 C-C motif chemokine ligand 5 susceptibility IMP
IEP
protein:increased expression:lung (mouse) RGD PMID:16208318 PMID:20656925 RGD:4892131, RGD:4145452 NCBI chr11:83,416,604...83,421,344
Ensembl chr11:83,416,604...83,421,344
JBrowse link
G Ccl8 C-C motif chemokine ligand 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr11:82,006,011...82,007,625
Ensembl chr11:82,006,011...82,007,625
JBrowse link
G Ccr5 C-C motif chemokine receptor 5 severity ISO
IMP
DNA:frameshift mutation:cds:p.S185_T195del rs333 (human) RGD PMID:20875295 PMID:19039768 PMID:18617426 RGD:4892063, RGD:4892119, RGD:4892122 NCBI chr 9:123,921,557...123,934,153
Ensembl chr 9:123,921,580...123,947,736
JBrowse link
G Cd14 CD14 antigen IMP RGD PMID:17825924 RGD:4144809 NCBI chr18:36,858,117...36,859,868
Ensembl chr18:36,858,120...36,859,851
JBrowse link
G Cd209a CD209a antigen susceptibility ISO RGD PMID:21191006 RGD:5131189 NCBI chr 8:3,793,395...3,798,984
Ensembl chr 8:3,793,397...3,798,984
JBrowse link
G Cd28 CD28 antigen IMP RGD PMID:21389258 RGD:5131611 NCBI chr 1:60,785,547...60,812,521
Ensembl chr 1:60,755,959...60,812,518
JBrowse link
G Cd40 CD40 antigen IEP RGD PMID:19922665 RGD:5132270 NCBI chr 2:164,897,535...164,913,574
Ensembl chr 2:164,897,547...164,914,868
JBrowse link
G Cd80 CD80 antigen IAGP
IEP
RGD PMID:10604996 PMID:19922665 RGD:5132623, RGD:5132270 NCBI chr16:38,277,793...38,316,682
Ensembl chr16:38,275,923...38,316,697
JBrowse link
G Cd86 CD86 antigen IEP protein:increased expression:mediastinal lymph node, B cell (mouse) RGD PMID:19933871 RGD:4892570 NCBI chr16:36,389,318...36,486,439
Ensembl chr16:36,424,231...36,486,443
JBrowse link
G Crp C-reactive protein, pentraxin-related ISO protein:increased expression:serum RGD PMID:21509252 RGD:5131277 NCBI chr 1:172,525,623...172,527,533
Ensembl chr 1:172,525,622...172,660,598
JBrowse link
G Csf2 colony stimulating factor 2 (granulocyte-macrophage) ISO
IMP
RGD PMID:20427198 PMID:21474645 RGD:5131472, RGD:5131470 NCBI chr11:54,138,096...54,140,725
Ensembl chr11:54,138,097...54,140,493
JBrowse link
G Cxcl1 C-X-C motif chemokine ligand 1 IEP protein:increased expression:lung, serum
protein:increased expression:respiratory system fluid/secretion
RGD PMID:17348295 PMID:20656925 RGD:4145366, RGD:4145452 NCBI chr 5:91,039,104...91,040,980
Ensembl chr 5:91,039,100...91,040,974
JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 5:92,494,497...92,496,748
Ensembl chr 5:92,494,497...92,496,748
JBrowse link
G Cxcl2 C-X-C motif chemokine ligand 2 IEP mRNA:increased expression:lung RGD PMID:21251691 PMID:20967263 RGD:5135026, RGD:4891425 NCBI chr 5:91,051,758...91,053,797
Ensembl chr 5:91,051,730...91,053,797
JBrowse link
G Ddx60 DExD/H box helicase 60 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 8:62,381,155...62,491,278
Ensembl chr 8:62,381,121...62,491,278
JBrowse link
G Egr1 early growth response 1 IEP mRNA:increased expression:frontal cortex (mouse) RGD PMID:21289196 RGD:5131660 NCBI chr18:34,994,260...34,998,009
Ensembl chr18:34,992,876...34,998,037
JBrowse link
G Eif2ak2 eukaryotic translation initiation factor 2-alpha kinase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr17:79,157,933...79,190,001
Ensembl chr17:79,159,993...79,190,002
JBrowse link
G Foxp2 forkhead box P2 IEP RGD PMID:18248790 RGD:11536002 NCBI chr 6:14,901,348...15,441,976
Ensembl chr 6:14,901,348...15,441,976
JBrowse link
G Gbp2b guanylate binding protein 2b ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 3:142,300,577...142,324,940
Ensembl chr 3:142,300,608...142,324,940
JBrowse link
G H2-Eb1 histocompatibility 2, class II antigen E beta ISO RGD PMID:19386707 RGD:4144816 NCBI chr17:34,524,841...34,535,648
Ensembl chr17:34,524,841...34,535,648
JBrowse link
G H2-M3 histocompatibility 2, M region locus 3 ISO RGD PMID:21087648 RGD:5144131 NCBI chr17:37,581,094...37,585,380
Ensembl chr17:37,581,111...37,585,375
JBrowse link
G Herc6 hect domain and RLD 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 6:57,557,977...57,642,121
Ensembl chr 6:57,557,985...57,641,617
JBrowse link
G Ifi27 interferon, alpha-inducible protein 27 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr12:103,400,448...103,406,504
Ensembl chr12:103,400,470...103,406,498
JBrowse link
G Ifi35 interferon-induced protein 35 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr11:101,339,238...101,349,527
Ensembl chr11:101,339,233...101,349,524
JBrowse link
G Ifi44 interferon-induced protein 44 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 3:151,436,559...151,455,580
Ensembl chr 3:151,436,559...151,455,597
JBrowse link
G Ifi44l interferon-induced protein 44 like ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 3:151,464,374...151,468,528
Ensembl chr 3:151,464,374...151,468,529
JBrowse link
G Ifih1 interferon induced with helicase C domain 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 2:62,426,137...62,476,599
Ensembl chr 2:62,426,142...62,476,599
JBrowse link
G Ifit2 interferon-induced protein with tetratricopeptide repeats 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr19:34,527,961...34,553,934
Ensembl chr19:34,528,094...34,553,819
JBrowse link
G Ifit3 interferon-induced protein with tetratricopeptide repeats 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr19:34,560,519...34,566,382
Ensembl chr19:34,560,931...34,566,131
JBrowse link
G Ifitm3 interferon induced transmembrane protein 3 susceptibility ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Influenza, severe, susceptibility to
CTD
ClinVar
OMIM
PMID:20943977 PMID:22446628 PMID:23326326 NCBI chr 7:140,589,503...140,590,657
Ensembl chr 7:140,589,499...140,590,683
JBrowse link
G Il10 interleukin 10 susceptibility IMP RGD PMID:20200252 RGD:4140426 NCBI chr 1:130,947,459...130,952,707
Ensembl chr 1:130,947,582...130,952,711
JBrowse link
G Il12b interleukin 12b IDA RGD PMID:16389596 RGD:4145426 NCBI chr11:44,290,890...44,305,504
Ensembl chr11:44,290,890...44,304,860
JBrowse link
G Il13 interleukin 13 ISO protein:increased expression:serum RGD PMID:20003352 RGD:4888530 NCBI chr11:53,522,150...53,525,529
Ensembl chr11:53,522,151...53,525,529
JBrowse link
G Il15 interleukin 15 IMP
ISO
IEP
mRNA, protein:increased expression:lung RGD PMID:21098221 PMID:19234203 PMID:20212069 RGD:4994196, RGD:4996472, RGD:4996471 NCBI chr 8:83,058,253...83,129,883
Ensembl chr 8:83,058,261...83,129,851
JBrowse link
G Il15ra interleukin 15 receptor, alpha chain IDA RGD PMID:21098221 RGD:4994196 NCBI chr 2:11,709,992...11,739,129
Ensembl chr 2:11,710,101...11,739,128
JBrowse link
G Il17a interleukin 17A IEP
IMP
mRNA, protein:increased expression:lung RGD PMID:19783685 PMID:19265125 RGD:4889102, RGD:4889150 NCBI chr 1:20,801,129...20,804,720
Ensembl chr 1:20,801,129...20,804,720
JBrowse link
G Il17ra interleukin 17 receptor A IMP RGD PMID:19783685 RGD:4889102 NCBI chr 6:120,440,143...120,460,692
Ensembl chr 6:120,440,208...120,464,520
JBrowse link
G Il18 interleukin 18 IMP RGD PMID:15606801 RGD:4889964 NCBI chr 9:50,466,000...50,493,141
Ensembl chr 9:50,466,127...50,493,140
JBrowse link
G Il1a interleukin 1 alpha IEP protein:increased expression:lung RGD PMID:11535264 RGD:4142860 NCBI chr 2:129,141,530...129,151,892
Ensembl chr 2:129,141,530...129,151,892
JBrowse link
G Il1b interleukin 1 beta IDA RGD PMID:20438620 RGD:4142822 NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059
JBrowse link
G Il1rn interleukin 1 receptor antagonist disease_progression ISO protein:increased expression:serum RGD PMID:9439800 PMID:20840779 RGD:4143228, RGD:4143203 NCBI chr 2:24,226,872...24,241,503
Ensembl chr 2:24,226,865...24,241,506
JBrowse link
G Il2 interleukin 2 ISO protein:increased expression:serum RGD PMID:21603856 RGD:5147905 NCBI chr 3:37,174,862...37,180,103
Ensembl chr 3:37,174,672...37,180,108
JBrowse link
G Il22 interleukin 22 IEP
IMP
RGD PMID:21178015 PMID:20504940 RGD:5147404, RGD:5147405 NCBI chr10:118,040,456...118,045,952
Ensembl chr10:118,040,847...118,045,952
JBrowse link
G Il4 interleukin 4 IEP RGD PMID:21092162 RGD:5128546 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496
JBrowse link
G Il6 interleukin 6 IEP RGD PMID:20731583 RGD:4143268 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979
JBrowse link
G Irf7 interferon regulatory factor 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 7:140,843,096...140,846,412
Ensembl chr 7:140,842,619...140,846,394
JBrowse link
G Isg15 ISG15 ubiquitin-like modifier ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 4:156,283,881...156,285,275
Ensembl chr 4:156,283,912...156,285,253
JBrowse link
G Lamp3 lysosomal-associated membrane protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr16:19,472,131...19,525,115
Ensembl chr16:19,472,128...19,525,125
JBrowse link
G Ly6e lymphocyte antigen 6 family member E ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr15:74,826,874...74,831,753
Ensembl chr15:74,826,900...74,831,752
JBrowse link
G Lyst lysosomal trafficking regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:26597256 NCBI chr13:13,764,896...13,953,388
Ensembl chr13:13,764,982...13,953,388
JBrowse link
G Mmp9 matrix metallopeptidase 9 IEP protein:increased activity:lung, heart, brain RGD PMID:20299740 RGD:5130855 NCBI chr 2:164,782,246...164,797,770
Ensembl chr 2:164,782,700...164,797,770
JBrowse link
G Mx1 MX dynamin-like GTPase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr16:97,248,235...97,264,106
Ensembl chr16:97,248,235...97,264,107
JBrowse link
G Nos1 nitric oxide synthase 1, neuronal IEP protein:increased expression:hippocampus RGD PMID:9552178 RGD:5132870 NCBI chr 5:118,004,904...118,096,905
Ensembl chr 5:117,919,097...118,096,905
JBrowse link
G Nos2 nitric oxide synthase 2, inducible IMP
IEP
mRNA:increased expression:olfactory epithelium
mRNA,protein:increased expression:brain
RGD PMID:17030871 PMID:17674769 PMID:18080188 RGD:4891952, RGD:4891919, RGD:4891937 NCBI chr11:78,811,613...78,851,052
Ensembl chr11:78,811,613...78,851,080
JBrowse link
G Oas1g 2'-5' oligoadenylate synthetase 1G ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 5:121,014,205...121,025,676
Ensembl chr 5:121,014,205...121,025,676
JBrowse link
G Oas2 2'-5' oligoadenylate synthetase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 5:120,868,398...120,887,949
Ensembl chr 5:120,868,398...120,887,918
JBrowse link
G Oas3 2'-5' oligoadenylate synthetase 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 5:120,891,163...120,915,755
Ensembl chr 5:120,891,163...120,915,726
JBrowse link
G Oasl1 2'-5' oligoadenylate synthetase-like 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 5:115,061,236...115,075,970
Ensembl chr 5:115,061,299...115,075,974
JBrowse link
G Or5an1 olfactory receptor family 5 subfamily AN member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr19:12,257,218...12,261,352
Ensembl chr19:12,257,218...12,262,990
JBrowse link
G Parp12 poly (ADP-ribose) polymerase family, member 12 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 6:39,063,346...39,095,283
Ensembl chr 6:39,063,344...39,095,283
JBrowse link
G Plscr1 phospholipid scramblase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 9:92,132,265...92,154,034
Ensembl chr 9:92,131,803...92,154,331
JBrowse link
G Prf1 perforin 1 (pore forming protein) ISO CTD Direct Evidence: marker/mechanism CTD PMID:26597256 NCBI chr10:61,133,530...61,140,463
Ensembl chr10:61,133,612...61,140,459
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 IMP RGD PMID:16272346 RGD:5143925 NCBI chr 1:149,975,851...149,983,978
Ensembl chr 1:149,975,782...149,983,978
JBrowse link
G Rigi RNA sensor RIG-I ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 4:40,203,775...40,239,843
Ensembl chr 4:40,203,773...40,239,828
JBrowse link
G Rsad2 radical S-adenosyl methionine domain containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr12:26,492,742...26,506,451
Ensembl chr12:26,492,745...26,506,451
JBrowse link
G Rtp4 receptor transporter protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr16:23,338,976...23,432,972
Ensembl chr16:23,339,041...23,432,972
JBrowse link
G Sco2 SCO2 cytochrome c oxidase assembly protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr15:89,255,833...89,258,094
Ensembl chr15:89,255,840...89,258,049
JBrowse link
G Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 2:84,595,704...84,605,748
Ensembl chr 2:84,595,731...84,605,788
JBrowse link
G Sftpd surfactant associated protein D IMP RGD PMID:16787926 RGD:4143518 NCBI chr14:40,894,169...40,907,155
Ensembl chr14:40,894,171...40,907,106
JBrowse link
G Siglec1 sialic acid binding Ig-like lectin 1, sialoadhesin ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 2:130,911,140...130,928,697
Ensembl chr 2:130,911,140...130,928,685
JBrowse link
G Slc22a8 solute carrier family 22 (organic anion transporter), member 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23129053 NCBI chr19:8,568,576...8,589,199
Ensembl chr19:8,568,618...8,589,199
JBrowse link
G Stat1 signal transducer and activator of transcription 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 1:52,158,588...52,201,024
Ensembl chr 1:52,158,599...52,201,024
JBrowse link
G Tdrd7 tudor domain containing 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 4:45,965,335...46,034,766
Ensembl chr 4:45,965,334...46,034,761
JBrowse link
G Tlr2 toll-like receptor 2 ISO protein:increased expression:monocyte RGD PMID:18657324 RGD:4145339 NCBI chr 3:83,743,579...83,749,045
Ensembl chr 3:83,743,579...83,749,074
JBrowse link
G Tlr3 toll-like receptor 3 IEP
IMP
mRNA:increased expression:lung (mouse) RGD PMID:16789835 PMID:18654661 RGD:5129219, RGD:5129136 NCBI chr 8:45,848,702...45,864,112
Ensembl chr 8:45,848,702...45,864,117
JBrowse link
G Tmprss11d transmembrane protease, serine 11d ISO CTD Direct Evidence: marker/mechanism CTD PMID:20237084 PMID:23072892 NCBI chr 5:86,450,713...86,521,246
Ensembl chr 5:86,450,076...86,521,279
JBrowse link
G Tmprss4 transmembrane protease, serine 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:26889029 NCBI chr 9:45,084,024...45,115,417
Ensembl chr 9:45,084,024...45,115,390
JBrowse link
G Tnf tumor necrosis factor ISO protein:increased expression:serum RGD PMID:21062445 RGD:5128683 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Tnfaip6 tumor necrosis factor alpha induced protein 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 2:51,928,125...51,946,693
Ensembl chr 2:51,928,021...51,946,698
JBrowse link
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a ISO
IMP
protein:increased expression:serum (human) RGD PMID:19497758 PMID:17182684 RGD:5131432, RGD:5131157 NCBI chr 6:125,326,686...125,339,446
Ensembl chr 6:125,326,325...125,339,447
JBrowse link
G Tnfsf10 tumor necrosis factor (ligand) superfamily, member 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 3:27,371,226...27,393,814
Ensembl chr 3:27,371,177...27,396,576
JBrowse link
G Tor1b torsin family 1, member B ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 2:30,842,951...30,854,085
Ensembl chr 2:30,842,971...30,849,027
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 9:108,887,000...108,888,791
Ensembl chr 9:108,887,001...108,888,802
JBrowse link
G Trim30a tripartite motif-containing 30A ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 7:104,058,232...104,114,400
Ensembl chr 7:104,058,232...104,114,400
JBrowse link
G Ube2l6 ubiquitin-conjugating enzyme E2L 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 2:84,629,172...84,640,347
Ensembl chr 2:84,629,172...84,640,679
JBrowse link
G Ugcg UDP-glucose ceramide glucosyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:33639165 NCBI chr 4:59,189,452...59,222,833
Ensembl chr 4:59,189,257...59,222,833
JBrowse link
G Xaf1 XIAP associated factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr11:72,192,229...72,204,560
Ensembl chr11:72,192,455...72,204,559
JBrowse link
G Xist inactive X specific transcripts ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr  X:102,503,979...102,526,839
Ensembl chr  X:102,503,972...102,537,573
JBrowse link
G Zcchc2 zinc finger, CCHC domain containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23326326 NCBI chr 1:105,916,929...105,961,807
Ensembl chr 1:105,918,136...105,961,804
JBrowse link
idiopathic interstitial pneumonia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxcl5 C-X-C motif chemokine ligand 5 ISO associated with Scleroderma, Diffuse
protein:increased expression:serum
RGD PMID:18432520 PMID:16085216 RGD:5135258, RGD:5135260 NCBI chr 5:90,907,157...90,909,484
Ensembl chr 5:90,907,219...90,909,483
JBrowse link
G Icam1 intercellular adhesion molecule 1 ISO protein:increased expression:lung, alveolar macrophage (human) RGD PMID:19218648 RGD:4145518 NCBI chr 9:20,927,236...20,940,110
Ensembl chr 9:20,927,281...20,940,113
JBrowse link
G Il6 interleukin 6 ISO protein:increased expression:bronchoalveolar lavage (rat) RGD PMID:10988147 RGD:11062092 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979
JBrowse link
G Keap1 kelch-like ECH-associated protein 1 ISO protein:increased expression:hyperplastic lung epithelium, alveolus (human) RGD PMID:20718723 RGD:6893300 NCBI chr 9:21,141,026...21,150,628
Ensembl chr 9:21,141,026...21,150,657
JBrowse link
G LOC110806267 Tert 5' regulatory region ISO ClinVar Annotator: match by term: idiopathic fibrosing alveolitis ClinVar PMID:24033266 PMID:25741868 PMID:28492532 PMID:31268371 NCBI chr13:73,770,663...73,775,510 JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO RGD PMID:21444868 RGD:7245946 NCBI chr 4:148,533,039...148,642,142
Ensembl chr 4:148,533,068...148,642,140
JBrowse link
G Scgb1a1 secretoglobin, family 1A, member 1 ISO protein:increased expression:serum RGD PMID:15467329 RGD:5144148 NCBI chr19:9,061,006...9,065,320
Ensembl chr19:9,061,000...9,065,322
JBrowse link
G Tert telomerase reverse transcriptase ISO ClinVar Annotator: match by term: idiopathic fibrosing alveolitis ClinVar PMID:9536098 PMID:15814878 PMID:15885610 PMID:16247010 PMID:17460043 More... NCBI chr13:73,775,030...73,797,962
Ensembl chr13:73,775,030...73,797,962
JBrowse link
influenza A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ataxia telangiectasia mutated exacerbates IMP RGD PMID:31509427 RGD:126779564 NCBI chr 9:53,348,422...53,448,125
Ensembl chr 9:53,350,449...53,448,040
JBrowse link
G Btk Bruton agammaglobulinemia tyrosine kinase ameliorates IMP Associated with Acute Lung Injury RGD PMID:29516781 RGD:124713566 NCBI chr  X:133,443,083...133,484,366
Ensembl chr  X:133,443,085...133,484,319
JBrowse link
G Duox1 dual oxidase 1 ISO protein:decreased expression:blood plasma (human) RGD PMID:24888898 RGD:40903071 NCBI chr 2:122,143,525...122,178,454
Ensembl chr 2:122,146,153...122,178,453
JBrowse link
G Duox2 dual oxidase 2 severity IMP RGD PMID:28936773 PMID:25751630 PMID:29556357 RGD:40924644, RGD:40925925, RGD:40925921 NCBI chr 2:122,109,727...122,129,221
Ensembl chr 2:122,109,728...122,128,930
JBrowse link
G Ifih1 interferon induced with helicase C domain 1 IEP mRNA:increased expression:nasal cavity mucosa (mouse) RGD PMID:25751630 RGD:40925925 NCBI chr 2:62,426,137...62,476,599
Ensembl chr 2:62,426,142...62,476,599
JBrowse link
G Il21 interleukin 21 IMP RGD PMID:25251568 RGD:127285548 NCBI chr 3:37,276,908...37,286,785
Ensembl chr 3:37,276,908...37,286,785
JBrowse link
G Il27 interleukin 27 ISO protein:increased expression:blood serum (human) RGD PMID:22343630 RGD:126790513 NCBI chr 7:126,188,181...126,194,197
Ensembl chr 7:126,188,182...126,194,113
JBrowse link
G Lrg1 leucine-rich alpha-2-glycoprotein 1 ISO protein:increased expression:blood plasma (human) RGD PMID:24888898 RGD:40903071 NCBI chr17:56,426,678...56,428,946
Ensembl chr17:56,426,678...56,429,001
JBrowse link
G Map3k8 mitogen-activated protein kinase kinase kinase 8 exacerbates IMP RGD PMID:26241898 RGD:11055126 NCBI chr18:4,331,325...4,352,978
Ensembl chr18:4,331,327...4,353,015
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ameliorates IMP RGD PMID:22514650 RGD:150340681 NCBI chr14:33,099,855...33,169,213
Ensembl chr14:33,099,855...33,169,115
JBrowse link
G Marco macrophage receptor with collagenous structure ameliorates IMP RGD PMID:21562316 RGD:41412197 NCBI chr 1:120,402,267...120,432,753
Ensembl chr 1:120,402,267...120,432,753
JBrowse link
G Mavs mitochondrial antiviral signaling protein disease_progression IMP RGD PMID:27438481 RGD:40903047 NCBI chr 2:131,075,445...131,089,945
Ensembl chr 2:131,075,983...131,089,945
JBrowse link
G Mir146 microRNA 146 exacerbates
ameliorates
IMP RGD PMID:31638222 PMID:30611999 RGD:126925152, RGD:126925153 NCBI chr11:43,265,224...43,265,288
Ensembl chr11:43,265,224...43,265,288
JBrowse link
G Mx1 MX dynamin-like GTPase 1 ameliorates IMP
ISO
fused with PTD 9-arginine sequence
human gene in a mouse model
RGD PMID:30696001 PMID:31653718 PMID:1371172 PMID:30945621 RGD:126777671, RGD:126777680, RGD:126777676, RGD:126777673 NCBI chr16:97,248,235...97,264,106
Ensembl chr16:97,248,235...97,264,107
JBrowse link
G Plac8 placenta-specific 8 IMP RGD PMID:32639988 RGD:40925929 NCBI chr 5:100,699,455...100,720,119
Ensembl chr 5:100,701,591...100,720,111
JBrowse link
G Ppia peptidylprolyl isomerase A ameliorates ISO human gene in a mouse model RGD PMID:27354005 RGD:150429624 NCBI chr11:6,365,867...6,369,817
Ensembl chr11:6,365,443...6,369,817
JBrowse link
G Rigi RNA sensor RIG-I IEP mRNA:increased expression:nasal cavity mucosa (mouse) RGD PMID:25751630 RGD:40925925 NCBI chr 4:40,203,775...40,239,843
Ensembl chr 4:40,203,773...40,239,828
JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 exacerbates
susceptibility
IMP RGD PMID:27321907 PMID:32200799 PMID:28410401 RGD:127229911, RGD:127229922, RGD:127229918 NCBI chr14:56,022,452...56,026,314
Ensembl chr14:56,022,452...56,026,322
JBrowse link
G Saa1 serum amyloid A 1 ISO protein:increased expression:blood plasma (human) RGD PMID:24888898 RGD:40903071 NCBI chr 7:46,389,921...46,392,404
Ensembl chr 7:46,389,921...46,392,404
JBrowse link
G Stat2 signal transducer and activator of transcription 2 exacerbates IMP RGD PMID:30337919 RGD:41789626 NCBI chr10:128,106,367...128,128,722
Ensembl chr10:128,106,428...128,128,718
JBrowse link
invasive aspergillosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end product-specific receptor IMP RGD PMID:21423669 RGD:5508765 NCBI chr17:34,816,545...34,819,911
Ensembl chr17:34,816,836...34,819,910
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 severity IMP RGD PMID:11160230 RGD:11528533 NCBI chr11:81,926,403...81,928,278
Ensembl chr11:81,926,397...81,928,279
JBrowse link
G Ccl20 C-C motif chemokine ligand 20 IEP protein:increased expression:lung RGD PMID:20926800 RGD:7483599 NCBI chr 1:83,094,487...83,096,888
Ensembl chr 1:83,094,487...83,096,888
JBrowse link
G Ccr6 C-C motif chemokine receptor 6 disease_progression IMP RGD PMID:17379855 RGD:7483617 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973
JBrowse link
G Cxcr3 C-X-C motif chemokine receptor 3 ISO RGD PMID:17298426 RGD:5135501 NCBI chr  X:100,775,141...100,777,753
Ensembl chr  X:100,775,141...100,777,875
JBrowse link
G Cybb cytochrome b-245, beta polypeptide IMP RGD PMID:24054721 RGD:10450528 NCBI chr  X:9,301,493...9,354,005
Ensembl chr  X:9,301,491...9,354,010
JBrowse link
G Cyp2c38 cytochrome P450, family 2, subfamily c, polypeptide 38 treatment ISO DNA:polymorphisms:cds: RGD PMID:26861072 RGD:124713410 NCBI chr19:39,379,109...39,451,519
Ensembl chr19:39,378,000...39,451,519
JBrowse link
G Elane elastase, neutrophil expressed IMP RGD PMID:24054721 RGD:10450528 NCBI chr10:79,722,146...79,724,050
Ensembl chr10:79,722,081...79,724,049
JBrowse link
G Il17a interleukin 17A severity IMP RGD PMID:21807912 RGD:8698654 NCBI chr 1:20,801,129...20,804,720
Ensembl chr 1:20,801,129...20,804,720
JBrowse link
G Mbl2 mannose-binding lectin (protein C) 2 ISO DNA:SNP:exon:rs5030737(human) RGD PMID:17311505 RGD:8693758 NCBI chr19:30,210,306...30,217,087
Ensembl chr19:30,210,342...30,217,087
JBrowse link
G Ptx3 pentraxin related gene severity ISO DNA:SNPs, missense mutation:intron, cds:rs2305619, rs1840680, rs3816527
protein:increased expression:bronchoalveolar lavage fluid (human)
RGD PMID:30275011 PMID:28487045 RGD:38501097, RGD:38508892 NCBI chr 3:66,127,308...66,133,227
Ensembl chr 3:66,127,331...66,133,226
JBrowse link
G S100b S100 protein, beta polypeptide, neural IMP RGD PMID:21423669 RGD:5508765 NCBI chr10:76,089,670...76,097,153
Ensembl chr10:76,089,687...76,096,993
JBrowse link
G Tlr2 toll-like receptor 2 IMP RGD PMID:16113258 RGD:8553022 NCBI chr 3:83,743,579...83,749,045
Ensembl chr 3:83,743,579...83,749,074
JBrowse link
G Tlr4 toll-like receptor 4 susceptibility ISO DNA:polymorphism:exon:p.D299G(human) RGD PMID:18275280 RGD:5130863 NCBI chr 4:66,745,788...66,765,338
Ensembl chr 4:66,745,821...66,848,521
JBrowse link
Invasive Pulmonary Aspergillosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl2 C-C motif chemokine ligand 2 treatment ISO RGD PMID:12917249 RGD:11528529 NCBI chr11:81,926,403...81,928,278
Ensembl chr11:81,926,397...81,928,279
JBrowse link
G Fgf2 fibroblast growth factor 2 treatment ISO RGD PMID:23303813 RGD:8655596 NCBI chr 3:37,402,616...37,464,255
Ensembl chr 3:37,402,495...37,464,257
JBrowse link
G Il1a interleukin 1 alpha ISO DNA:polymorphism, haplotype:promoter:-889C>T (human) RGD PMID:18484169 RGD:4142867 NCBI chr 2:129,141,530...129,151,892
Ensembl chr 2:129,141,530...129,151,892
JBrowse link
G Il1b interleukin 1 beta ISO DNA:polymorphism, haplotype: :-511C>T (human) RGD PMID:18484169 RGD:4142867 NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059
JBrowse link
G Itih4 inter alpha-trypsin inhibitor, heavy chain 4 ISO protein:increased expression:respiratory system fluid/secretion, serum RGD PMID:24360996 RGD:40903005 NCBI chr14:30,608,433...30,623,943
Ensembl chr14:30,608,433...30,624,310
JBrowse link
G Mbl2 mannose-binding lectin (protein C) 2 treatment ISO RGD PMID:17335555 RGD:8693746 NCBI chr19:30,210,306...30,217,087
Ensembl chr19:30,210,342...30,217,087
JBrowse link
G Ptx3 pentraxin related gene susceptibility
no_association
ISO DNA:SNP:intron:rs1840680 (human)
protein:increased expression:bronchoalveolar lavage fluid, plasma (human)
protein:increased expression:plasma
DNA:SNP, missense mutation:intron, cds:rs2305619, rs3816527
RGD PMID:29020397 PMID:29964232 PMID:29020397 PMID:29020397 RGD:38501098, RGD:38508894, RGD:38501098, RGD:38501098 NCBI chr 3:66,127,308...66,133,227
Ensembl chr 3:66,127,331...66,133,226
JBrowse link
G Vegfa vascular endothelial growth factor A treatment ISO RGD PMID:23303813 RGD:8655596 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295
JBrowse link
Klebsiella pneumonia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxcl15 C-X-C motif chemokine ligand 15 IMP RGD PMID:11207292 RGD:38549344 NCBI chr 5:90,942,393...90,950,926
Ensembl chr 5:90,942,393...90,950,926
JBrowse link
G Il23a interleukin 23, alpha subunit p19 severity IMP RGD PMID:16157683 RGD:39457940 NCBI chr10:128,132,009...128,133,953
Ensembl chr10:128,132,008...128,134,621
JBrowse link
G Irak3 interleukin-1 receptor-associated kinase 3 severity IMP
IEP
mRNA:increased expression:lung (mouse) RGD PMID:22729155 PMID:20864681 RGD:35316077, RGD:36049798 NCBI chr10:119,977,553...120,038,035
Ensembl chr10:119,977,553...120,038,035
JBrowse link
G Lcn2 lipocalin 2 exacerbates
ameliorates
IMP
IGI
IEP
protein:increased expression:lung
protein:increased expression:serum
RGD PMID:29633303 PMID:19342674 PMID:19342674 PMID:19342674 PMID:25234944 More... RGD:126725082, RGD:126725085, RGD:126725085, RGD:126725085, RGD:126725084, RGD:126725084 NCBI chr 2:32,274,649...32,277,751
Ensembl chr 2:32,274,645...32,278,264
JBrowse link
G Plac8 placenta-specific 8 severity IMP RGD PMID:17404296 RGD:40924563 NCBI chr 5:100,699,455...100,720,119
Ensembl chr 5:100,701,591...100,720,111
JBrowse link
G Trem1 triggering receptor expressed on myeloid cells 1 disease_progression IMP RGD PMID:24396044 RGD:126925976 NCBI chr17:48,539,763...48,553,955
Ensembl chr17:48,539,796...48,553,952
JBrowse link
Legionnaires' disease term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO protein:increased expression:serum RGD PMID:9255891 RGD:5128857 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159
JBrowse link
G Cx3cl1 C-X3-C motif chemokine ligand 1 IMP RGD PMID:16113250 RGD:4891897 NCBI chr 8:95,498,808...95,509,055
Ensembl chr 8:95,498,637...95,509,055
JBrowse link
G Cxcl1 C-X-C motif chemokine ligand 1 IEP mRNA, protein:increased expression:lung RGD PMID:11254553 RGD:5135252 NCBI chr 5:91,039,104...91,040,980
Ensembl chr 5:91,039,100...91,040,974
JBrowse link
G Cxcl2 C-X-C motif chemokine ligand 2 IEP mRNA, protein:increased expression:lung RGD PMID:11254553 RGD:5135252 NCBI chr 5:91,051,758...91,053,797
Ensembl chr 5:91,051,730...91,053,797
JBrowse link
G Cxcl5 C-X-C motif chemokine ligand 5 IEP mRNA, protein:increased expression:lung RGD PMID:11254553 RGD:5135252 NCBI chr 5:90,907,157...90,909,484
Ensembl chr 5:90,907,219...90,909,483
JBrowse link
G Cxcr2 C-X-C motif chemokine receptor 2 IMP RGD PMID:11254553 RGD:5135252 NCBI chr 1:74,193,153...74,200,405
Ensembl chr 1:74,193,150...74,200,405
JBrowse link
G Ifng interferon gamma ISO CTD Direct Evidence: therapeutic CTD PMID:11349020 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797
JBrowse link
G Il18 interleukin 18 IDA RGD PMID:11083766 RGD:4889865 NCBI chr 9:50,466,000...50,493,141
Ensembl chr 9:50,466,127...50,493,140
JBrowse link
G Mbl2 mannose-binding lectin (protein C) 2 susceptibility ISO RGD PMID:19073229 RGD:12910934 NCBI chr19:30,210,306...30,217,087
Ensembl chr19:30,210,342...30,217,087
JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 IMP RGD PMID:20685341 RGD:5131443 NCBI chr 6:54,900,927...54,949,655
Ensembl chr 6:54,900,934...54,949,597
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 IMP RGD PMID:20685341 RGD:5131443 NCBI chr 8:89,373,943...89,415,103
Ensembl chr 8:89,373,943...89,415,102
JBrowse link
G Tlr5 toll-like receptor 5 susceptibility ISO
IMP
DNA:nonsense mutation:cds:p.R392X (human)
ClinVar Annotator: match by term: Legionnaire disease, susceptibility to
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
CTD
RGD
PMID:14623910 PMID:16027372 PMID:23447684 PMID:14623910 PMID:17982089 RGD:5129477, RGD:5129510 NCBI chr 1:182,782,317...182,804,010
Ensembl chr 1:182,782,353...182,804,010
JBrowse link
G Tlr9 toll-like receptor 9 IMP RGD PMID:18426877 RGD:5130707 NCBI chr 9:106,099,797...106,104,075
Ensembl chr 9:106,099,797...106,104,082
JBrowse link
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a IMP RGD PMID:18838275 RGD:5131445 NCBI chr 6:125,326,686...125,339,446
Ensembl chr 6:125,326,325...125,339,447
JBrowse link
G Tnfrsf1b tumor necrosis factor receptor superfamily, member 1b IMP RGD PMID:18838275 RGD:5131445 NCBI chr 4:144,938,938...144,973,453
Ensembl chr 4:144,940,033...144,973,440
JBrowse link
Mycoplasma pneumoniae pneumonia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO protein:increased expression:serum RGD PMID:9255891 RGD:5128857 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159
JBrowse link
G Atp1b2 ATPase, Na+/K+ transporting, beta 2 polypeptide severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr11:69,490,554...69,496,786
Ensembl chr11:69,490,562...69,496,768
JBrowse link
G Ccl4 C-C motif chemokine ligand 4 IEP RGD PMID:16988274 RGD:4892091 NCBI chr11:83,553,410...83,555,509
Ensembl chr11:83,553,410...83,555,509
JBrowse link
G Ccl5 C-C motif chemokine ligand 5 IEP protein:increased secretion:lung, secretion (mouse) RGD PMID:18717637 RGD:4891914 NCBI chr11:83,416,604...83,421,344
Ensembl chr11:83,416,604...83,421,344
JBrowse link
G Ccl8 C-C motif chemokine ligand 8 IEP RGD PMID:16988274 RGD:4892091 NCBI chr11:82,006,011...82,007,625
Ensembl chr11:82,006,011...82,007,625
JBrowse link
G Ccr5 C-C motif chemokine receptor 5 IEP protein:increased expression:lung, T-helper cell (mouse) RGD PMID:16988274 RGD:4892091 NCBI chr 9:123,921,557...123,934,153
Ensembl chr 9:123,921,580...123,947,736
JBrowse link
G Clec5a C-type lectin domain family 5, member a severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr 6:40,551,832...40,562,739
Ensembl chr 6:40,551,828...40,562,755
JBrowse link
G Col3a1 collagen, type III, alpha 1 severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr 1:45,350,698...45,388,866
Ensembl chr 1:45,350,698...45,388,866
JBrowse link
G Col6a1 collagen, type VI, alpha 1 severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr10:76,544,626...76,561,869
Ensembl chr10:76,544,626...76,562,002
JBrowse link
G Col6a2 collagen, type VI, alpha 2 severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr10:76,431,590...76,459,464
Ensembl chr10:76,431,596...76,459,464
JBrowse link
G Crp C-reactive protein, pentraxin-related ISO RGD PMID:21426633 RGD:5131292 NCBI chr 1:172,525,623...172,527,533
Ensembl chr 1:172,525,622...172,660,598
JBrowse link
G Dnase1l3 deoxyribonuclease 1-like 3 severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr14:14,475,014...14,504,586
Ensembl chr14:14,475,200...14,505,240
JBrowse link
G Fcer2a Fc receptor, IgE, low affinity II, alpha polypeptide severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr 8:3,730,280...3,744,174
Ensembl chr 8:3,731,737...3,744,175
JBrowse link
G Flt1 FMS-like tyrosine kinase 1 severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr 5:147,498,414...147,663,419
Ensembl chr 5:147,498,414...147,662,821
JBrowse link
G Galc galactosylceramidase ISO
IEP
associated with Guillain-Barre syndrome; protein:increased expression:serum (human)
associated with Guillain-Barre syndrome; protein:increased expression:Cerebrospinal fluid, serum (human)
protein:increased expression:serum (mouse)
RGD PMID:27490360 PMID:29301655 PMID:30396892 PMID:30396892 PMID:12225900 RGD:38599168, RGD:38599172, RGD:38599171, RGD:38599171, RGD:38599169 NCBI chr12:98,168,543...98,226,565
Ensembl chr12:98,168,553...98,225,718
JBrowse link
G Hdc histidine decarboxylase IEP RGD PMID:17158962 RGD:5143920 NCBI chr 2:126,435,579...126,465,942
Ensembl chr 2:126,435,587...126,461,219
JBrowse link
G Htra3 HtrA serine peptidase 3 severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr 5:35,809,370...35,837,157
Ensembl chr 5:35,809,367...35,837,126
JBrowse link
G Ifng interferon gamma IEP mRNA:increased expression:lung: RGD PMID:7935058 RGD:10755754 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797
JBrowse link
G Il13 interleukin 13 ISO protein:increased expression:serum RGD PMID:20416219 RGD:4145765 NCBI chr11:53,522,150...53,525,529
Ensembl chr11:53,522,151...53,525,529
JBrowse link
G Il22ra2 interleukin 22 receptor, alpha 2 severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr10:19,497,776...19,510,429
Ensembl chr10:19,497,746...19,510,429
JBrowse link
G Inhba inhibin beta-A severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr13:16,178,841...16,206,194
Ensembl chr13:16,186,436...16,206,206
JBrowse link
G Ms4a1 membrane-spanning 4-domains, subfamily A, member 1 severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr19:11,227,043...11,243,513
Ensembl chr19:11,227,039...11,243,605
JBrowse link
G Pld4 phospholipase D family member 4 severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr12:112,727,089...112,735,420
Ensembl chr12:112,727,089...112,735,424
JBrowse link
G Spib Spi-B transcription factor (Spi-1/PU.1 related) severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr 7:44,175,419...44,181,511
Ensembl chr 7:44,175,417...44,181,495
JBrowse link
G Tcf7 transcription factor 7, T cell specific severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158
JBrowse link
G Tcl1 T cell lymphoma breakpoint 1 severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr12:105,183,012...105,188,996
Ensembl chr12:105,183,009...105,189,052
JBrowse link
G Tnf tumor necrosis factor ISO protein:increased expression:serum RGD PMID:20416219 RGD:4145765 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Tnfrsf13c tumor necrosis factor receptor superfamily, member 13c severity ISO RGD PMID:28302172 RGD:32716376 NCBI chr15:82,105,943...82,108,581
Ensembl chr15:82,105,944...82,108,570
JBrowse link
nasopharyngitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptch1 patched 1 ISO mRNA:decreased expression:epithelium of nasopharynx RGD PMID:23001130 RGD:150523839 NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412
JBrowse link
Perennial Allergic Rhinitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing ISO protein:decreased expression:serum RGD PMID:19725899 RGD:5686851 NCBI chr16:22,965,286...22,976,718
Ensembl chr16:22,965,286...22,976,778
JBrowse link
G Alb albumin ISO CTD Direct Evidence: marker/mechanism CTD PMID:19389874 NCBI chr 5:90,608,729...90,624,461
Ensembl chr 5:90,608,756...90,624,461
JBrowse link
G Alox5ap arachidonate 5-lipoxygenase activating protein ISO protein:increased expression:nasal turbinate RGD PMID:19364335 RGD:5147461 NCBI chr 5:149,201,814...149,224,963
Ensembl chr 5:149,201,577...149,224,963
JBrowse link
G Cat catalase ISO protein:decreased expression:plasma RGD PMID:20493834 RGD:5130771 NCBI chr 2:103,284,249...103,315,498
Ensembl chr 2:103,284,194...103,315,505
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 ISO protein:increased expression:nasal turbinate, mucosa (human) RGD PMID:9865755 RGD:8548839 NCBI chr11:81,926,403...81,928,278
Ensembl chr11:81,926,397...81,928,279
JBrowse link
G Ccr2 C-C motif chemokine receptor 2 ISO mRNA:increased expression:Nasal Mucosa RGD PMID:17982926 RGD:4145109 NCBI chr 9:123,901,954...123,913,594
Ensembl chr 9:123,901,987...123,913,594
JBrowse link
G Ccr5 C-C motif chemokine receptor 5 ISO mRNA:increased expression:nasal mucosa (human) RGD PMID:17982926 RGD:4145109 NCBI chr 9:123,921,557...123,934,153
Ensembl chr 9:123,921,580...123,947,736
JBrowse link
G Cd40 CD40 antigen IMP RGD PMID:20226305 RGD:5132269 NCBI chr 2:164,897,535...164,913,574
Ensembl chr 2:164,897,547...164,914,868
JBrowse link
G Cd86 CD86 antigen ISO protein:increased expression:nasal mucosa, dendritic cell (human) RGD PMID:17088138 RGD:4892343 NCBI chr16:36,389,318...36,486,439
Ensembl chr16:36,424,231...36,486,443
JBrowse link
G Chia1 chitinase, acidic 1 ISO mRNA, protein:increased expression:turbinate, mucosa (human) RGD PMID:20422678 RGD:5037226 NCBI chr 3:106,020,698...106,039,434
Ensembl chr 3:106,020,545...106,039,436
JBrowse link
G Egr1 early growth response 1 ISO DNA:snp:5' utr:g.-4071A>G rs7729723 (human) RGD PMID:19833116 RGD:5131984 NCBI chr18:34,994,260...34,998,009
Ensembl chr18:34,992,876...34,998,037
JBrowse link
G F2rl1 F2R like trypsin receptor 1 ISO RGD PMID:17727088 RGD:4892590 NCBI chr13:95,648,226...95,661,748
Ensembl chr13:95,648,240...95,661,735
JBrowse link
G Gstp1 glutathione S-transferase, pi 1 susceptibility ISO DNA:polymorphism:exon:p.I105V (rs1695) (human) RGD PMID:17181111 RGD:4142523 NCBI chr19:4,085,411...4,087,912
Ensembl chr19:4,085,407...4,087,985
JBrowse link
G Hmox1 heme oxygenase 1 ISO mRNA, protein:increased expression: nasal mucosa RGD PMID:16540907 RGD:4145406 NCBI chr 8:75,820,246...75,827,221
Ensembl chr 8:75,820,249...75,827,217
JBrowse link
G Icam1 intercellular adhesion molecule 1 IEP
ISO
protein:increased expression:lung, endothelium (mouse)
protein:increased secretion:nasopharynx (human)
RGD PMID:19968652 PMID:19047814 RGD:4145464, RGD:4145520 NCBI chr 9:20,927,236...20,940,110
Ensembl chr 9:20,927,281...20,940,113
JBrowse link
G Ifngr1 interferon gamma receptor 1 ISO DNA: SNP: Leu467Pro RGD PMID:12851715 RGD:6480431 NCBI chr10:19,467,697...19,485,977
Ensembl chr10:19,467,697...19,485,977
JBrowse link
G Il13 interleukin 13 ISO mRNA, protein:increased expression:nasal mucosa RGD PMID:8520776 RGD:4782826 NCBI chr11:53,522,150...53,525,529
Ensembl chr11:53,522,151...53,525,529
JBrowse link
G Il17a interleukin 17A severity ISO protein:increased expression:serum RGD PMID:19226302 RGD:4889151 NCBI chr 1:20,801,129...20,804,720
Ensembl chr 1:20,801,129...20,804,720
JBrowse link
G Il18 interleukin 18 susceptibility ISO DNA:SNP:promoter:c. -607A>C (rs1946518) (human) RGD PMID:16406079 RGD:4889924 NCBI chr 9:50,466,000...50,493,141
Ensembl chr 9:50,466,127...50,493,140
JBrowse link
G Il1a interleukin 1 alpha ISO DNA:polymorphism:exon:c.4845G>T (human) RGD PMID:14533660 RGD:4142859 NCBI chr 2:129,141,530...129,151,892
Ensembl chr 2:129,141,530...129,151,892
JBrowse link
G Il1r1 interleukin 1 receptor, type I ISO RGD PMID:18637763 RGD:5037238 NCBI chr 1:40,261,651...40,355,361
Ensembl chr 1:40,264,240...40,356,417
JBrowse link
G Il2 interleukin 2 ISO protein:decreased expression:serum: RGD PMID:17608155 RGD:8662959 NCBI chr 3:37,174,862...37,180,103
Ensembl chr 3:37,174,672...37,180,108
JBrowse link
G Il4 interleukin 4 treatment ISO protein:increased expression:serum RGD PMID:21171297 PMID:9237816 PMID:15329007 RGD:5128559, RGD:7829817, RGD:7829804 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496
JBrowse link
G Il5 interleukin 5 ISO protein: increased levels: sputum RGD PMID:22186238 RGD:5687140 NCBI chr11:53,611,621...53,615,930
Ensembl chr11:53,611,621...53,615,933
JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO protein:increased expression:nasal mucosa: RGD PMID:19786210 RGD:5130872 NCBI chr 8:93,553,920...93,580,049
Ensembl chr 8:93,553,919...93,580,048
JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO protein:increased expression:nasal mucosa: RGD PMID:19786210 RGD:5130872 NCBI chr 2:164,782,246...164,797,770
Ensembl chr 2:164,782,700...164,797,770
JBrowse link
G Nos2 nitric oxide synthase 2, inducible IEP protein:increased expression:nasal mucosa RGD PMID:14587983 RGD:4892078 NCBI chr11:78,811,613...78,851,052
Ensembl chr11:78,811,613...78,851,080
JBrowse link
G Nos3 nitric oxide synthase 3, endothelial cell ISO DNA:snp:promoter:g.-786T>C (human) RGD PMID:18086269 RGD:4892054 NCBI chr 5:24,569,772...24,589,472
Ensembl chr 5:24,569,808...24,589,472
JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 ISO protein:altered expression:nasal mucosa RGD PMID:20185258 RGD:4892593 NCBI chr18:39,543,598...39,652,485
Ensembl chr18:39,543,598...39,652,474
JBrowse link
G Pparg peroxisome proliferator activated receptor gamma ISO mRNA, protein:increased expression:nasal mucosa (human) RGD PMID:17116814 RGD:8552811 NCBI chr 6:115,337,828...115,467,365
Ensembl chr 6:115,337,912...115,467,360
JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 ISO protein:increased expression:respiratory system epithelium RGD PMID:19364335 RGD:5147461 NCBI chr 2:36,106,758...36,142,287
Ensembl chr 2:36,120,438...36,142,284
JBrowse link
G Tbxa2r thromboxane A2 receptor treatment ISO RGD PMID:15247523 RGD:11059532 NCBI chr10:81,164,102...81,171,008
Ensembl chr10:81,164,565...81,171,006
JBrowse link
pleural empyema term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plau plasminogen activator, urokinase ISO Gene product used in treatment of disease RGD PMID:20304453 RGD:4891955 NCBI chr14:20,886,730...20,893,456
Ensembl chr14:20,886,728...20,893,453
JBrowse link
G Tnc tenascin C ISO protein:increased expression:pleura RGD PMID:10950882 RGD:4889594 NCBI chr 4:63,878,022...63,965,554
Ensembl chr 4:63,878,022...63,965,252
JBrowse link
G Trem1 triggering receptor expressed on myeloid cells 1 treatment ISO RGD PMID:20819512 RGD:127284851 NCBI chr17:48,539,763...48,553,955
Ensembl chr17:48,539,796...48,553,952
JBrowse link
pleural tuberculosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO protein:increased activity:pleural fluid:
protein:increased activity:serum:
protein:increased expression:serum:
RGD PMID:21860532 PMID:1818842 PMID:1689629 PMID:18357489 RGD:152995280, RGD:152998934, RGD:152995292, RGD:152995288 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159
JBrowse link
G Ccl22 C-C motif chemokine ligand 22 ISO RGD PMID:20337996 RGD:4891473 NCBI chr 8:95,472,312...95,478,016
Ensembl chr 8:95,472,218...95,478,327
JBrowse link
G Ccr2 C-C motif chemokine receptor 2 ISO RGD PMID:19159432 RGD:4145106 NCBI chr 9:123,901,954...123,913,594
Ensembl chr 9:123,901,987...123,913,594
JBrowse link
G Ccr5 C-C motif chemokine receptor 5 ISO protein:increased expression:pleural fluid, natural killer cell (human) RGD PMID:19159432 RGD:4145106 NCBI chr 9:123,921,557...123,934,153
Ensembl chr 9:123,921,580...123,947,736
JBrowse link
G Foxp3 forkhead box P3 disease_progression ISO associated with human immunodeficiency virus infectious disease; RGD PMID:21303360 RGD:36947878 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G Il1b interleukin 1 beta ISO DNA:polymorphism: :3953T>C (human) RGD PMID:10377182 RGD:4143226 NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059
JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO DNA:repeat (human) RGD PMID:10377182 RGD:4143226 NCBI chr 2:24,226,872...24,241,503
Ensembl chr 2:24,226,865...24,241,506
JBrowse link
G Il27 interleukin 27 exacerbates ISO associated with Pleural Effusion;protein:increased expression:pleural fluid (human)
protein:increased expression:alveolar system (human)
RGD PMID:25753767 PMID:31819557 PMID:23962500 PMID:28844060 RGD:126790505, RGD:126790549, RGD:126790523, RGD:126790517 NCBI chr 7:126,188,181...126,194,197
Ensembl chr 7:126,188,182...126,194,113
JBrowse link
G Il33 interleukin 33 ISO protein:increased expression:pleural fluid: RGD PMID:23301222 RGD:39939042 NCBI chr19:29,902,513...29,938,118
Ensembl chr19:29,902,514...29,938,118
JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO protein:increased expression:pleura: RGD PMID:18715875 RGD:5129700 NCBI chr 2:164,782,246...164,797,770
Ensembl chr 2:164,782,700...164,797,770
JBrowse link
G Tlr4 toll-like receptor 4 ISO RGD PMID:18295348 RGD:4144193 NCBI chr 4:66,745,788...66,765,338
Ensembl chr 4:66,745,821...66,848,521
JBrowse link
G Tnc tenascin C ISO protein:increased expression:pleura RGD PMID:10950882 RGD:4889594 NCBI chr 4:63,878,022...63,965,554
Ensembl chr 4:63,878,022...63,965,252
JBrowse link
pleurisy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase IDA RGD PMID:16860713 RGD:5128847 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159
JBrowse link
G Alox5 arachidonate 5-lipoxygenase ISO RGD PMID:9109363 RGD:4890429 NCBI chr 6:116,387,030...116,438,139
Ensembl chr 6:116,387,038...116,438,139
JBrowse link
G Anxa1 annexin A1 ISO RGD PMID:15784654 RGD:2306907 NCBI chr19:20,350,798...20,368,035
Ensembl chr19:20,350,792...20,368,308
JBrowse link
G Bdkrb1 bradykinin receptor, beta 1 ISO RGD PMID:11853231 RGD:5129218 NCBI chr12:105,570,350...105,571,770
Ensembl chr12:105,569,344...105,571,687
JBrowse link
G Bdkrb2 bradykinin receptor, beta 2 IMP
ISO
RGD PMID:15316088 PMID:9208140 RGD:4891029, RGD:4891041 NCBI chr12:105,529,431...105,561,503
Ensembl chr12:105,529,485...105,561,496
JBrowse link
G C3 complement component 3 IEP protein:increased activity:pleural cavity RGD PMID:18256172 RGD:5129520 NCBI chr17:57,510,967...57,535,136
Ensembl chr17:57,510,970...57,535,136
JBrowse link
G Cat catalase IEP RGD PMID:19778612 RGD:5130749 NCBI chr 2:103,284,249...103,315,498
Ensembl chr 2:103,284,194...103,315,505
JBrowse link
G Ccl11 C-C motif chemokine ligand 11 IEP
ISO
protein:increased expression:pleural fluid RGD PMID:11877329 PMID:11564646 RGD:4145443, RGD:4145479 NCBI chr11:81,948,658...81,953,781
Ensembl chr11:81,948,649...81,953,781
JBrowse link
G Ccl25 C-C motif chemokine ligand 25 IEP protein:increased expression:pleural fluid RGD PMID:18056919 RGD:5130924 NCBI chr 8:4,375,207...4,410,020
Ensembl chr 8:4,375,210...4,410,020
JBrowse link
G Ccl5 C-C motif chemokine ligand 5 IEP protein:increased secretion:lung (mouse) RGD PMID:18672096 RGD:4890016 NCBI chr11:83,416,604...83,421,344
Ensembl chr11:83,416,604...83,421,344
JBrowse link
G Ccr3 C-C motif chemokine receptor 3 IMP associated with Mycobacterium Infections RGD PMID:17158890 RGD:4145643 NCBI chr 9:123,817,799...123,831,729
Ensembl chr 9:123,822,009...123,831,726
JBrowse link
G Csf3 colony stimulating factor 3 (granulocyte) ISO RGD PMID:8841835 RGD:11039424 NCBI chr11:98,591,287...98,594,457
Ensembl chr11:98,592,089...98,594,455
JBrowse link
G Cxcl1 C-X-C motif chemokine ligand 1 IEP RGD PMID:14527170 RGD:5135449 NCBI chr 5:91,039,104...91,040,980
Ensembl chr 5:91,039,100...91,040,974
JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 IEP RGD PMID:14527170 RGD:5135449 NCBI chr 5:92,494,497...92,496,748
Ensembl chr 5:92,494,497...92,496,748
JBrowse link
G Cxcl2 C-X-C motif chemokine ligand 2 ISO
IEP
RGD PMID:21549112 PMID:14527170 RGD:5135064, RGD:5135449 NCBI chr 5:91,051,758...91,053,797
Ensembl chr 5:91,051,730...91,053,797
JBrowse link
G Cxcl9 C-X-C motif chemokine ligand 9 IEP RGD PMID:14527170 RGD:5135449 NCBI chr 5:92,469,190...92,475,938
Ensembl chr 5:92,469,206...92,475,938
JBrowse link
G Ednra endothelin receptor type A IMP RGD PMID:15107459 RGD:4892325 NCBI chr 8:78,389,658...78,451,081
Ensembl chr 8:78,389,660...78,451,093
JBrowse link
G Elane elastase, neutrophil expressed ISO RGD PMID:20860667 RGD:10450565 NCBI chr10:79,722,146...79,724,050
Ensembl chr10:79,722,081...79,724,049
JBrowse link
G Esr1 estrogen receptor 1 (alpha) ISO RGD PMID:17035596 RGD:4892303 NCBI chr10:4,561,989...4,955,633
Ensembl chr10:4,561,593...4,955,614
JBrowse link
G Icam1 intercellular adhesion molecule 1 ISO
IEP
associated with Tuberculosis; protein:increased expression:pleural fluid, natural killer cell (human)
CTD Direct Evidence: marker/mechanism
protein:increased expression:bronchial epithelium (mouse)
CTD
RGD
PMID:11181422 PMID:19714575 PMID:19056932 RGD:4145510, RGD:4145519 NCBI chr 9:20,927,236...20,940,110
Ensembl chr 9:20,927,281...20,940,113
JBrowse link
G Il10 interleukin 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11181422 NCBI chr 1:130,947,459...130,952,707
Ensembl chr 1:130,947,582...130,952,711
JBrowse link
G Il15 interleukin 15 ISO RGD PMID:10823416 RGD:4990464 NCBI chr 8:83,058,253...83,129,883
Ensembl chr 8:83,058,261...83,129,851
JBrowse link
G Il17a interleukin 17A treatment ISO RGD PMID:21898269 RGD:7175307 NCBI chr 1:20,801,129...20,804,720
Ensembl chr 1:20,801,129...20,804,720
JBrowse link
G Il1b interleukin 1 beta ISO
IEP
CTD Direct Evidence: marker/mechanism
protein:increased expression:pleural cavity, exudate (rat)
protein:increased expression:lung
CTD
RGD
PMID:11181422 PMID:20141620 PMID:21898269 PMID:20175894 RGD:4142808, RGD:7175307, RGD:4142826 NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059
JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO RGD PMID:8491511 RGD:4143233 NCBI chr 2:24,226,872...24,241,503
Ensembl chr 2:24,226,865...24,241,506
JBrowse link
G Il6 interleukin 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11181422 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979
JBrowse link
G Mpo myeloperoxidase IEP protein:increased activity:lung RGD PMID:11577999 RGD:5130991 NCBI chr11:87,684,610...87,695,238
Ensembl chr11:87,684,407...87,695,239
JBrowse link
G Nfe2l2 nuclear factor, erythroid derived 2, like 2 IMP RGD PMID:14673141 RGD:6893408 NCBI chr 2:75,505,860...75,535,007
Ensembl chr 2:75,505,857...75,534,985
JBrowse link
G Nos2 nitric oxide synthase 2, inducible ISO protein:increased expression:pleural cavity (rat) RGD PMID:21898269 PMID:20141620 RGD:7175307, RGD:4142808 NCBI chr11:78,811,613...78,851,052
Ensembl chr11:78,811,613...78,851,080
JBrowse link
G Pla2g6 phospholipase A2, group VI ISO RGD PMID:15003994 RGD:6482741 NCBI chr15:79,170,428...79,212,915
Ensembl chr15:79,170,428...79,212,590
JBrowse link
G Ptafr platelet-activating factor receptor treatment ISO RGD PMID:8395390 RGD:10043147 NCBI chr 4:132,291,378...132,309,994
Ensembl chr 4:132,291,378...132,309,994
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 ISO RGD PMID:20141620 PMID:15740981 RGD:4142808, RGD:5143929 NCBI chr 1:149,975,851...149,983,978
Ensembl chr 1:149,975,782...149,983,978
JBrowse link
G Selp selectin, platelet IEP
ISO
protein:increased expression:lung
CTD Direct Evidence: marker/mechanism
CTD
RGD
PMID:11181422 PMID:21147071 RGD:6219005 NCBI chr 1:163,942,833...163,977,595
Ensembl chr 1:163,942,833...163,977,595
JBrowse link
G Serpine1 serine (or cysteine) peptidase inhibitor, clade E, member 1 susceptibility ISO associated with Familial Mediterranean Fever;DNA: DNA:polymorphism:promoter:rs1799768 (human): RGD PMID:23052617 RGD:13207414 NCBI chr 5:137,090,358...137,101,126
Ensembl chr 5:137,090,358...137,101,122
JBrowse link
G Tnf tumor necrosis factor IMP
ISO
CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:11181422 PMID:11161459 PMID:20141620 RGD:4143474, RGD:4142808 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
pleuropneumonia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox5 arachidonate 5-lipoxygenase IMP RGD PMID:12773506 RGD:4890419 NCBI chr 6:116,387,030...116,438,139
Ensembl chr 6:116,387,038...116,438,139
JBrowse link
Pneumococcal Pneumonia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase IMP RGD PMID:26456931 RGD:11098923 NCBI chr 6:122,530,768...122,541,139
Ensembl chr 6:122,530,760...122,541,139
JBrowse link
G Alox5 arachidonate 5-lipoxygenase IMP RGD PMID:20231413 RGD:4890435 NCBI chr 6:116,387,030...116,438,139
Ensembl chr 6:116,387,038...116,438,139
JBrowse link
G Btk Bruton agammaglobulinemia tyrosine kinase ameliorates IMP RGD PMID:30646846 RGD:124715470 NCBI chr  X:133,443,083...133,484,366
Ensembl chr  X:133,443,085...133,484,319
JBrowse link
G C3 complement component 3 disease_progression IMP
ISO
protein:decreased expression:serum
associated with Liver Cirrhosis, Experimental;protein:decreased expression:respiratory system fluid/secretion
RGD PMID:15972516 PMID:20405 PMID:17956621 RGD:5129509, RGD:5130163, RGD:5129523 NCBI chr17:57,510,967...57,535,136
Ensembl chr17:57,510,970...57,535,136
JBrowse link
G Ccl5 C-C motif chemokine ligand 5 susceptibility IMP RGD PMID:16455992 RGD:4892130 NCBI chr11:83,416,604...83,421,344
Ensembl chr11:83,416,604...83,421,344
JBrowse link
G Cd14 CD14 antigen IMP RGD PMID:17185649 RGD:4144788 NCBI chr18:36,858,117...36,859,868
Ensembl chr18:36,858,120...36,859,851
JBrowse link
G Chi3l1 chitinase 3 like 1 ISO protein:increased secretion:serum (human) RGD PMID:10515841 RGD:4892626 NCBI chr 1:134,109,894...134,117,769
Ensembl chr 1:134,109,914...134,117,919
JBrowse link
G Crhr1 corticotropin releasing hormone receptor 1 IMP RGD PMID:21774994 RGD:5147472 NCBI chr11:104,021,289...104,066,349
Ensembl chr11:104,023,681...104,066,349
JBrowse link
G Crhr2 corticotropin releasing hormone receptor 2 IMP RGD PMID:21774994 RGD:5147472 NCBI chr 6:55,067,033...55,110,001
Ensembl chr 6:55,067,034...55,110,001
JBrowse link
G Crp C-reactive protein, pentraxin-related disease_progression ISO RGD PMID:21281676 RGD:5131293 NCBI chr 1:172,525,623...172,527,533
Ensembl chr 1:172,525,622...172,660,598
JBrowse link
G Cxcl1 C-X-C motif chemokine ligand 1 IEP protein:increased expression:respiratory system fluid/secretion RGD PMID:20958976 RGD:5134957 NCBI chr 5:91,039,104...91,040,980
Ensembl chr 5:91,039,100...91,040,974
JBrowse link
G Cxcl15 C-X-C motif chemokine ligand 15 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24894820 NCBI chr 5:90,942,393...90,950,926
Ensembl chr 5:90,942,393...90,950,926
JBrowse link
G Cxcl9 C-X-C motif chemokine ligand 9 IEP protein:increased expression:lung RGD PMID:20381636 RGD:5135285 NCBI chr 5:92,469,190...92,475,938
Ensembl chr 5:92,469,206...92,475,938
JBrowse link
G Defb3 defensin beta 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24894820 NCBI chr 8:19,343,377...19,345,355
Ensembl chr 8:19,343,376...19,345,307
JBrowse link
G Hc hemolytic complement severity IAGP RGD PMID:7814608 RGD:5130159 NCBI chr 2:34,873,341...34,958,518
Ensembl chr 2:34,873,343...34,951,450
JBrowse link
G Hmox1 heme oxygenase 1 IEP associated with influenza;protein:increased expression:lung RGD PMID:17348295 RGD:4145366 NCBI chr 8:75,820,246...75,827,221
Ensembl chr 8:75,820,249...75,827,217
JBrowse link
G Hp haptoglobin ISO RGD PMID:19396720 RGD:5147385 NCBI chr 8:110,301,760...110,305,804
Ensembl chr 8:110,301,760...110,305,804
JBrowse link
G Il15 interleukin 15 IEP protein:increased expression:alveolar macrophage, bronchial epithelial cell RGD PMID:17611121 RGD:5000755 NCBI chr 8:83,058,253...83,129,883
Ensembl chr 8:83,058,261...83,129,851
JBrowse link
G Il15ra interleukin 15 receptor, alpha chain IEP RGD PMID:17611121 RGD:5000755 NCBI chr 2:11,709,992...11,739,129
Ensembl chr 2:11,710,101...11,739,128
JBrowse link
G Il17a interleukin 17A IDA RGD PMID:19995896 RGD:4888531 NCBI chr 1:20,801,129...20,804,720
Ensembl chr 1:20,801,129...20,804,720
JBrowse link
G Il18 interleukin 18 IMP RGD PMID:15770015 RGD:4889960 NCBI chr 9:50,466,000...50,493,141
Ensembl chr 9:50,466,127...50,493,140
JBrowse link
G Il6 interleukin 6 IDA RGD PMID:20643849 RGD:4143255 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979
JBrowse link
G Lep leptin IMP RGD PMID:17822444 RGD:5128869 NCBI chr 6:29,060,220...29,073,875
Ensembl chr 6:29,060,219...29,073,876
JBrowse link
G Lepr leptin receptor IMP RGD PMID:21148797 RGD:5128846 NCBI chr 4:101,574,393...101,676,375
Ensembl chr 4:101,574,601...101,672,549
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24894820 NCBI chr16:16,801,246...16,865,317
Ensembl chr16:16,801,246...16,865,317
JBrowse link
G Mapk3 mitogen-activated protein kinase 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24894820 NCBI chr 7:126,358,798...126,364,988
Ensembl chr 7:126,358,773...126,364,991
JBrowse link
G Masp2 MBL associated serine protease 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12904520 NCBI chr 4:148,679,079...148,699,939
Ensembl chr 4:148,687,011...148,699,956
JBrowse link
G Mbl2 mannose-binding lectin (protein C) 2 no_association ISO DNA:polymorphisms:5' utr, exon:multiple (human)
DNA:mutations:5' utr, exon:multiple (human)
RGD PMID:12047967 PMID:18641104 RGD:4889478, RGD:4889477 NCBI chr19:30,210,306...30,217,087
Ensembl chr19:30,210,342...30,217,087
JBrowse link
G Nos2 nitric oxide synthase 2, inducible IMP RGD PMID:17056580 RGD:4891950 NCBI chr11:78,811,613...78,851,052
Ensembl chr11:78,811,613...78,851,080
JBrowse link
G Pten phosphatase and tensin homolog ameliorates IMP myeloid knockout RGD PMID:20505137 RGD:127285597 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560
JBrowse link
G Sftpd surfactant associated protein D severity IMP RGD PMID:16255775 RGD:4143519 NCBI chr14:40,894,169...40,907,155
Ensembl chr14:40,894,171...40,907,106
JBrowse link
G Sirt1 sirtuin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24894820 NCBI chr10:63,154,784...63,174,814
Ensembl chr10:63,154,784...63,217,483
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 IMP RGD PMID:29263110 RGD:39128230 NCBI chr18:35,866,731...35,873,607
Ensembl chr18:35,866,732...35,873,607
JBrowse link
G Tlr2 toll-like receptor 2 IMP RGD PMID:19956717 RGD:4145321 NCBI chr 3:83,743,579...83,749,045
Ensembl chr 3:83,743,579...83,749,074
JBrowse link
G Tnf tumor necrosis factor IMP
IEP
associated with influenza;protein:increased expression:lung RGD PMID:9032201 PMID:17348295 RGD:4143479, RGD:4145366 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Trem1 triggering receptor expressed on myeloid cells 1 ameliorates IEP
IDA
RGD PMID:24752755 PMID:19596984 RGD:126928121, RGD:127229903 NCBI chr17:48,539,763...48,553,955
Ensembl chr17:48,539,796...48,553,952
JBrowse link
pneumocystosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin1 antizyme inhibitor 1 ISO mRNA:increased expression:alveolar macrophage RGD PMID:19158080 RGD:14700806 NCBI chr15:38,487,674...38,523,506
Ensembl chr15:38,487,671...38,519,510
JBrowse link
G C3 complement component 3 ISO RGD PMID:17169032 RGD:5129525 NCBI chr17:57,510,967...57,535,136
Ensembl chr17:57,510,970...57,535,136
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 ISO protein:increased expression:respiratory system fluid/secretion RGD PMID:20618689 RGD:4891428 NCBI chr11:81,926,403...81,928,278
Ensembl chr11:81,926,397...81,928,279
JBrowse link
G Cd40 CD40 antigen treatment IDA RGD PMID:10968950 RGD:8547797 NCBI chr 2:164,897,535...164,913,574
Ensembl chr 2:164,897,547...164,914,868
JBrowse link
G Csf2 colony stimulating factor 2 (granulocyte-macrophage) ISO protein:increased expression:respiratory system fluid/secretion RGD PMID:19487471 RGD:5131475 NCBI chr11:54,138,096...54,140,725
Ensembl chr11:54,138,097...54,140,493
JBrowse link
G H2-Ab1 histocompatibility 2, class II antigen A, beta 1 ISO RGD PMID:20377877 RGD:4144112 NCBI chr17:34,482,201...34,488,392
Ensembl chr17:34,476,663...34,488,393
JBrowse link
G Il23a interleukin 23, alpha subunit p19 IMP RGD PMID:17403873 RGD:39458043 NCBI chr10:128,132,009...128,133,953
Ensembl chr10:128,132,008...128,134,621
JBrowse link
G Il33 interleukin 33 treatment IDA RGD PMID:21220696 RGD:40400892 NCBI chr19:29,902,513...29,938,118
Ensembl chr19:29,902,514...29,938,118
JBrowse link
G Muc1 mucin 1, transmembrane ISO protein:increased expression:serum RGD PMID:9617869 RGD:5131424 NCBI chr 3:89,136,363...89,140,688
Ensembl chr 3:89,136,364...89,140,688
JBrowse link
G Nos2 nitric oxide synthase 2, inducible ISO protein:decreased dimerization:alveolar macrophage
mRNA:increased expression:alveolar macrophage
RGD PMID:20558778 PMID:20377877 RGD:4891486, RGD:4144112 NCBI chr11:78,811,613...78,851,052
Ensembl chr11:78,811,613...78,851,080
JBrowse link
G Sftpa1 surfactant associated protein A1 IEP protein:increased expression:lung RGD PMID:11385364 RGD:4143431 NCBI chr14:40,853,745...40,858,330
Ensembl chr14:40,853,739...40,858,409
JBrowse link
G Sftpb surfactant associated protein B IEP protein:decreased expression:lung RGD PMID:11385364 RGD:4143431 NCBI chr 6:72,281,594...72,291,354
Ensembl chr 6:72,281,594...72,291,354
JBrowse link
G Sftpc surfactant associated protein C IEP protein:decreased expression:lung RGD PMID:11385364 RGD:4143431 NCBI chr14:70,758,381...70,761,521
Ensembl chr14:70,758,389...70,761,521
JBrowse link
G Sftpd surfactant associated protein D IEP protein:increased expression:lung RGD PMID:11385364 RGD:4143431 NCBI chr14:40,894,169...40,907,155
Ensembl chr14:40,894,171...40,907,106
JBrowse link
G Tlr2 toll-like receptor 2 IMP RGD PMID:18400546 RGD:4145341 NCBI chr 3:83,743,579...83,749,045
Ensembl chr 3:83,743,579...83,749,074
JBrowse link
pneumonia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcf1 ATP-binding cassette, sub-family F member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr17:36,267,711...36,280,642
Ensembl chr17:36,267,711...36,280,653
JBrowse link
G Abo ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase severity ISO DNA:polymorphism:cds:allele A (human) RGD PMID:4375858 RGD:39938844 NCBI chr 2:26,732,508...26,754,973
Ensembl chr 2:26,732,515...26,754,991
JBrowse link
G Ace angiotensin I converting enzyme disease_progression ISO associated with Hypertension RGD PMID:17727310 PMID:19455553 PMID:20051911 RGD:4140922, RGD:4140918, RGD:4140916 NCBI chr11:105,858,774...105,880,790
Ensembl chr11:105,858,771...105,880,790
JBrowse link
G Adora1 adenosine A1 receptor IMP RGD PMID:15630442 RGD:5129098 NCBI chr 1:134,126,953...134,163,195
Ensembl chr 1:134,126,963...134,163,169
JBrowse link
G Adora2a adenosine A2a receptor IMP
IDA
associated with Lung Injury
associated with Anemia, Sickle Cell
RGD PMID:18703794 PMID:17601796 PMID:20798237 RGD:4890364, RGD:4890376, RGD:4890358 NCBI chr10:75,152,711...75,170,626
Ensembl chr10:75,152,711...75,170,618
JBrowse link
G Adrb2 adrenergic receptor, beta 2 ISO RGD PMID:19925785 RGD:4145041 NCBI chr18:62,310,784...62,313,052
Ensembl chr18:62,310,887...62,313,030
JBrowse link
G Agt angiotensinogen ISO CTD Direct Evidence: therapeutic CTD PMID:28960804 NCBI chr 8:125,283,326...125,296,445
Ensembl chr 8:125,283,273...125,296,445
JBrowse link
G Ahr aryl-hydrocarbon receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:23337360 NCBI chr12:35,547,978...35,584,988
Ensembl chr12:35,547,973...35,585,037
JBrowse link
G Alb albumin disease_progression ISO RGD PMID:23286966 RGD:11035283 NCBI chr 5:90,608,729...90,624,461
Ensembl chr 5:90,608,756...90,624,461
JBrowse link
G Bdkrb2 bradykinin receptor, beta 2 IMP RGD PMID:15021973 RGD:4891030 NCBI chr12:105,529,431...105,561,503
Ensembl chr12:105,529,485...105,561,496
JBrowse link
G C3 complement component 3 ISO RGD PMID:10886251 RGD:5129562 NCBI chr17:57,510,967...57,535,136
Ensembl chr17:57,510,970...57,535,136
JBrowse link
G C3ar1 complement component 3a receptor 1 IMP associated with Respiratory Syncytial Virus Infections RGD PMID:17079327 RGD:5129688 NCBI chr 6:122,824,099...122,833,116
Ensembl chr 6:122,824,097...122,833,120
JBrowse link
G Casp1 caspase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr 9:5,298,517...5,307,281
Ensembl chr 9:5,298,508...5,307,290
JBrowse link
G Ccl11 C-C motif chemokine ligand 11 IDA
ISO
CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:21625544 PMID:11290805 PMID:10595930 RGD:4145445, RGD:4145450 NCBI chr11:81,948,658...81,953,781
Ensembl chr11:81,948,649...81,953,781
JBrowse link
G Ccl12 C-C motif chemokine ligand 12 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr11:81,992,671...81,994,225
Ensembl chr11:81,992,671...81,994,226
JBrowse link
G Ccl17 C-C motif chemokine ligand 17 ISO mRNA:increased expression:lung
CTD Direct Evidence: marker/mechanism
CTD
RGD
PMID:21625544 PMID:15993846 RGD:2306304 NCBI chr 8:95,535,996...95,538,666
Ensembl chr 8:95,537,081...95,538,664
JBrowse link
G Ccl19 C-C motif chemokine ligand 19 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr 4:42,754,525...42,756,558
Ensembl chr 4:42,754,525...42,756,577
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IEP
ISO
protein:increased expression:respiratory system fluid/secretion
CTD Direct Evidence: marker/mechanism
CTD
RGD
PMID:21625544 PMID:19648283 RGD:4891461 NCBI chr11:81,926,403...81,928,278
Ensembl chr11:81,926,397...81,928,279
JBrowse link
G Ccl20 C-C motif chemokine ligand 20 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr 1:83,094,487...83,096,888
Ensembl chr 1:83,094,487...83,096,888
JBrowse link
G Ccl22 C-C motif chemokine ligand 22 ISO mRNA:increased expression:lung RGD PMID:15993846 RGD:2306304 NCBI chr 8:95,472,312...95,478,016
Ensembl chr 8:95,472,218...95,478,327
JBrowse link
G Ccl24 C-C motif chemokine ligand 24 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr 5:135,598,789...135,601,977
Ensembl chr 5:135,598,791...135,601,903
JBrowse link
G Ccl3 C-C motif chemokine ligand 3 ISO mRNA:increased expression:bronchoalveolar lavage (human) RGD PMID:32407669 RGD:30296672 NCBI chr11:83,538,669...83,540,204
Ensembl chr11:83,538,670...83,540,181
JBrowse link
G Ccl4 C-C motif chemokine ligand 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr11:83,553,410...83,555,509
Ensembl chr11:83,553,410...83,555,509
JBrowse link
G Ccl7 C-C motif chemokine ligand 7 ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:21625544 PMID:15191918 RGD:5130985 NCBI chr11:81,936,538...81,938,351
Ensembl chr11:81,936,538...81,938,351
JBrowse link
G Ccl8 C-C motif chemokine ligand 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr11:82,006,011...82,007,625
Ensembl chr11:82,006,011...82,007,625
JBrowse link
G Ccl9 C-C motif chemokine ligand 9 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr11:83,463,743...83,469,462
Ensembl chr11:83,463,745...83,469,462
JBrowse link
G Ccr1 C-C motif chemokine receptor 1 IMP
ISO
CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:21625544 PMID:20870892 RGD:5688175 NCBI chr 9:123,762,163...123,768,729
Ensembl chr 9:123,762,161...123,768,729
JBrowse link
G Ccr2 C-C motif chemokine receptor 2 IMP
ISO
IDA
CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:21625544 PMID:14615370 PMID:17284325 RGD:4145068, RGD:8661704 NCBI chr 9:123,901,954...123,913,594
Ensembl chr 9:123,901,987...123,913,594
JBrowse link
G Ccr3 C-C motif chemokine receptor 3 IEP mRNA:increased expression:lung RGD PMID:19762220 RGD:4145622 NCBI chr 9:123,817,799...123,831,729
Ensembl chr 9:123,822,009...123,831,726
JBrowse link
G Ccr5 C-C motif chemokine receptor 5 IEP Idiopathic Pneumonia Syndrome; mRNA:increased expression:lung (mouse) RGD PMID:15546955 RGD:4892103 NCBI chr 9:123,921,557...123,934,153
Ensembl chr 9:123,921,580...123,947,736
JBrowse link
G Ccr6 C-C motif chemokine receptor 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973
JBrowse link
G Ccr7 C-C motif chemokine receptor 7 ISO mRNA, protein:increased expression:lung RGD PMID:16394278 RGD:5130919 NCBI chr11:99,035,025...99,045,903
Ensembl chr11:99,035,022...99,045,903
JBrowse link
G Ccr9 C-C motif chemokine receptor 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr 9:123,596,276...123,612,522
Ensembl chr 9:123,507,504...123,613,395
JBrowse link
G Cd14 CD14 antigen ISO protein:increased expression:multiple RGD PMID:20302606 RGD:4144794 NCBI chr18:36,858,117...36,859,868
Ensembl chr18:36,858,120...36,859,851
JBrowse link
G Cd163 CD163 antigen ISO associated with liver disease;protein:increased expression:blood serum (human) RGD PMID:26339412 RGD:11251207 NCBI chr 6:124,281,596...124,307,488
Ensembl chr 6:124,281,615...124,307,486
JBrowse link
G Cd40lg CD40 ligand ISO CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr  X:56,257,448...56,269,402
Ensembl chr  X:56,257,503...56,269,402
JBrowse link
G Coq6 coenzyme Q6 monooxygenase ISO ClinVar Annotator: match by term: increased susceptibility to pneumonia ClinVar NCBI chr12:84,408,530...84,420,570
Ensembl chr12:84,408,431...84,420,570
JBrowse link
G Crhr2 corticotropin releasing hormone receptor 2 IMP RGD PMID:16855006 RGD:5130933 NCBI chr 6:55,067,033...55,110,001
Ensembl chr 6:55,067,034...55,110,001
JBrowse link
G Crp C-reactive protein, pentraxin-related severity
disease_progression
ISO RGD PMID:21258955 PMID:21439658 RGD:5131283, RGD:5131291 NCBI chr 1:172,525,623...172,527,533
Ensembl chr 1:172,525,622...172,660,598
JBrowse link
G Csf2 colony stimulating factor 2 (granulocyte-macrophage) IDA
ISO
CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:11732872 PMID:19633061 RGD:4142837 NCBI chr11:54,138,096...54,140,725
Ensembl chr11:54,138,097...54,140,493
JBrowse link
G Csf3r colony stimulating factor 3 receptor ISO mRNA:increased expression:bronchoalveolar lavage (human) RGD PMID:32407669 RGD:30296672 NCBI chr 4:125,917,241...125,938,233
Ensembl chr 4:125,918,343...125,938,233
JBrowse link
G Csk c-src tyrosine kinase IMP RGD PMID:14975240 RGD:5134363 NCBI chr 9:57,533,929...57,560,758
Ensembl chr 9:57,533,929...57,560,914
JBrowse link
G Cx3cl1 C-X3-C motif chemokine ligand 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr 8:95,498,808...95,509,055
Ensembl chr 8:95,498,637...95,509,055
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G Cxcl1 C-X-C motif chemokine ligand 1 ISO mRNA, protein:increased expression:lung
CTD Direct Evidence: marker/mechanism
CTD
RGD
PMID:21625544 PMID:20728373 RGD:5134959 NCBI chr 5:91,039,104...91,040,980
Ensembl chr 5:91,039,100...91,040,974
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G Cxcl10 C-X-C motif chemokine ligand 10 IMP
IEP
associated with Lupus Erythematosus, Systemic;mRNA:increased expression:lung RGD PMID:15265940 PMID:14979941 RGD:5135445, RGD:5135491 NCBI chr 5:92,494,497...92,496,748
Ensembl chr 5:92,494,497...92,496,748
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G Cxcl15 C-X-C motif chemokine ligand 15 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr 5:90,942,393...90,950,926
Ensembl chr 5:90,942,393...90,950,926
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G Cxcl2 C-X-C motif chemokine ligand 2 ISO
IEP
mRNA, protein:increased expression:lung
mRNA:increased expression:lung
RGD PMID:20728373 PMID:18367723 RGD:5134959, RGD:5135235 NCBI chr 5:91,051,758...91,053,797
Ensembl chr 5:91,051,730...91,053,797
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G Cxcl3 C-X-C motif chemokine ligand 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr 5:90,933,960...90,935,952
Ensembl chr 5:90,933,962...90,937,459
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G Cxcl5 C-X-C motif chemokine ligand 5 ISO protein:increased expression:sputum RGD PMID:18410262 RGD:5135259 NCBI chr 5:90,907,157...90,909,484
Ensembl chr 5:90,907,219...90,909,483
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G Cxcl9 C-X-C motif chemokine ligand 9 ISO
IMP
protein:increased expression:serum
CTD Direct Evidence: marker/mechanism
CTD
RGD
PMID:21625544 PMID:17052299 PMID:15265940 RGD:5135440, RGD:5135445 NCBI chr 5:92,469,190...92,475,938
Ensembl chr 5:92,469,206...92,475,938
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G Cxcr2 C-X-C motif chemokine receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21625544 NCBI chr 1:74,193,153...74,200,405
Ensembl chr 1:74,193,150...74,200,405
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