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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:Craniocerebral Trauma
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Accession:DOID:9007621 term browser browse the term
Definition:Traumatic injuries involving the cranium and intracranial structures (i.e., BRAIN; CRANIAL NERVES; MENINGES; and other structures). Injuries may be classified by whether or not the skull is penetrated (i.e., penetrating vs. nonpenetrating) or whether there is an associated hemorrhage.
Synonyms:exact_synonym: Craniocerebral Injuries;   Craniocerebral Injury;   Craniocerebral Traumas;   Crushing Skull Injuries;   Crushing Skull Injury;   Forehead Trauma;   Forehead Traumas;   Frontal Region Trauma;   Frontal Region Traumas;   Head Injuries;   Head Injury;   Head Trauma;   Head Traumas;   Minor Head Injuries;   Minor Head Injury;   Multiple Head Injuries;   Multiple Head Injury;   Occipital Region Trauma;   Occipital Region Traumas;   Occipital Trauma;   Occipital Traumas;   Open Head Injuries;   Open Head Injury;   Parietal Region Trauma;   Parietal Region Traumas;   Superficial Head Injuries;   Superficial Head Injury;   Temporal Region Trauma;   Temporal Region Traumas
 primary_id: MESH:D006259;   RDO:0005059
 xref: EFO:0009505

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Craniocerebral Trauma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adnp activity dependent neuroprotector homeobox ISO RGD PMID:11123362 RGD:2312784 NCBI chrNW_004624790:4,822,467...4,854,852
Ensembl chrNW_004624790:4,832,494...4,854,845 		JBrowse link
G Il1a interleukin 1 alpha ISO protein:increased expression:microglial cell RGD PMID:7830934 RGD:10045949 NCBI chrNW_004624749:12,795,967...12,805,658
Ensembl chrNW_004624749:12,795,946...12,805,154 		JBrowse link
G Postn periostin ISO RGD PMID:17878602 RGD:10041014 NCBI chrNW_004624920:542,479...575,760
Ensembl chrNW_004624920:540,750...575,855 		JBrowse link
G Serpinc1 serpin family C member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:8810955 NCBI chrNW_004624771:7,955,778...7,966,637
Ensembl chrNW_004624771:7,955,739...7,966,637 		JBrowse link
Acute Subdural Hematoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G F7 coagulation factor VII ISO CTD Direct Evidence: therapeutic CTD PMID:12503044 NCBI chrNW_004624793:780,057...788,105
Ensembl chrNW_004624793:780,059...788,095 		JBrowse link
G Kcnn4 potassium calcium-activated channel subfamily N member 4 treatment ISO RGD PMID:15379997 RGD:329969897 NCBI chrNW_004624907:1,266,348...1,279,258
Ensembl chrNW_004624907:1,266,348...1,278,699 		JBrowse link
brain compression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfl1 cofilin 1 treatment ISO RGD PMID:25708984 RGD:12738361 NCBI chrNW_004624767:20,574,884...20,578,413
Ensembl chrNW_004624767:20,574,966...20,579,796 		JBrowse link
Brain Concussion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drd2 dopamine receptor D2 ISO RGD PMID:26448536 RGD:13506960 NCBI chrNW_004624784:8,828,589...8,906,617
Ensembl chrNW_004624784:8,827,006...8,865,529 		JBrowse link
G Drd3 dopamine receptor D3 ISO RGD PMID:26448536 RGD:13506960 NCBI chrNW_004624731:34,318,733...34,369,111
Ensembl chrNW_004624731:34,319,130...34,363,184 		JBrowse link
G Drd4 dopamine receptor D4 ISO RGD PMID:26448536 RGD:13506960 NCBI chrNW_004624766:21,834,093...21,837,314
Ensembl chrNW_004624766:21,834,169...21,836,710 		JBrowse link
G Il6 interleukin 6 treatment ISO RGD PMID:27113205 RGD:11062140 NCBI chrNW_004624739:7,957,709...7,963,414
Ensembl chrNW_004624739:7,957,674...7,962,318 		JBrowse link
Brain Contusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C3 complement C3 ameliorates ISO RGD PMID:31654641 RGD:408418727 NCBI chrNW_004624828:3,773,816...3,798,077
Ensembl chrNW_004624828:3,770,221...3,797,946 		JBrowse link
G Casp8 caspase 8 treatment ISO RGD PMID:28140659 RGD:13782305 NCBI chrNW_004624899:427,064...450,931
Ensembl chrNW_004624899:424,363...451,087 		JBrowse link
G Il1b interleukin 1 beta treatment ISO RGD PMID:31654641 RGD:408418727 NCBI chrNW_004624749:12,852,128...12,858,478
Ensembl chrNW_004624749:12,852,021...12,858,760 		JBrowse link
G Pycard PYD and CARD domain containing treatment ISO RGD PMID:19401709 RGD:5491174 NCBI chrNW_004624782:14,247,333...14,249,861
Ensembl chrNW_004624782:14,247,864...14,249,000 		JBrowse link
G Tnf tumor necrosis factor treatment ISO RGD PMID:31654641 RGD:408418727 NCBI chrNW_004624754:24,623,059...24,625,647
Ensembl chrNW_004624754:24,623,425...24,625,531 		JBrowse link
Brain Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc8 ATP binding cassette subfamily C member 8 treatment ISO RGD PMID:21107131 RGD:12791995 NCBI chrNW_004624766:9,018,616...9,092,365
Ensembl chrNW_004624766:9,018,721...9,092,287 		JBrowse link
G Acan aggrecan ISO mRNA:increased expression:fascia dentata (rat) RGD PMID:18511192 RGD:2315807 NCBI chrNW_004624768:16,093,552...16,156,655 JBrowse link
G Actr2 actin related protein 2 ISO mRNA, protein:decreased expression:hippocampus (rat) RGD PMID:22120305 RGD:11530046 NCBI chrNW_004624762:8,282,415...8,339,818
Ensembl chrNW_004624762:8,281,433...8,339,830 		JBrowse link
G Adcyap1 adenylate cyclase activating polypeptide 1 ISO RGD PMID:16689670 RGD:2325298 NCBI chrNW_004624770:11,359,606...11,375,833
Ensembl chrNW_004624770:11,358,286...11,375,813 		JBrowse link
G Adra1a adrenoceptor alpha 1A ISO mRNA:increased expression:frontal cortex RGD PMID:20974230 RGD:5688366 NCBI chrNW_004624758:21,557,161...21,665,432
Ensembl chrNW_004624758:21,569,908...21,665,244 		JBrowse link
G Ager advanced glycosylation end-product specific receptor ISO protein:increased expression:brain (rat) RGD PMID:22491548 PMID:22915134 PMID:24859607 RGD:7245513 RGD:7245557 RGD:8696001 NCBI chrNW_004624754:24,138,086...24,140,900 JBrowse link
G Aif1 allograft inflammatory factor 1 ISO protein:increased expression:cerebral cortex (rat) RGD PMID:19520144 RGD:2313020 NCBI chrNW_004624754:24,590,071...24,591,913
Ensembl chrNW_004624754:24,590,071...24,591,904 		JBrowse link
G Aifm1 apoptosis inducing factor mitochondria associated 1 ISO protein:increased expression:nucleus: RGD PMID:12091479 RGD:10053567 NCBI chrNW_004624797:9,346,620...9,384,531
Ensembl chrNW_004624797:9,345,726...9,384,645 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO protein:increased phosphorylation:brain, neuron RGD PMID:16234845 RGD:5509090 NCBI chrNW_004624734:507,880...525,295
Ensembl chrNW_004624734:509,368...525,295 		JBrowse link
G Alb albumin ISO CTD Direct Evidence: marker/mechanism CTD PMID:7909931 PMID:17188501 NCBI chrNW_004624735:34,105,237...34,123,479
Ensembl chrNW_004624735:34,104,537...34,123,624 		JBrowse link
G Ambp alpha-1-microglobulin/bikunin precursor ISO protein:increased expression:urine RGD PMID:14592616 RGD:6904155 NCBI chrNW_004624760:21,047,576...21,064,698
Ensembl chrNW_004624760:21,047,303...21,068,076 		JBrowse link
G Ank3 ankyrin 3 ISO RGD PMID:20557305 RGD:6767288 NCBI chrNW_004624791:3,299,287...3,633,631 JBrowse link
G Anp32a acidic nuclear phosphoprotein 32 family member A ISO RGD PMID:24385964 RGD:10401136 NCBI chrNW_004624781:4,365,378...4,477,004
Ensembl chrNW_004624781:4,441,238...4,477,004 		JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 ISO protein:increased expression:cerebral cortex RGD PMID:11567033 RGD:2325751 NCBI chrNW_004624750:8,835,521...8,940,957
Ensembl chrNW_004624750:8,837,037...8,938,009 		JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 ISO mRNA:increased expression:brain RGD PMID:12707777 RGD:2301208 NCBI chrNW_004624817:7,913,541...7,937,945
Ensembl chrNW_004624817:7,909,468...7,936,487 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11447995 NCBI chrNW_004624825:4,711,921...4,714,926
Ensembl chrNW_004624825:4,708,093...4,714,921 		JBrowse link
G Apod apolipoprotein D ISO mRNA, protein:increased expression:cerebral cortex, glia cell, neuron RGD PMID:10501208 RGD:2311202 NCBI chrNW_004624730:62,535,005...62,552,405
Ensembl chrNW_004624730:62,530,673...62,555,129 		JBrowse link
G App amyloid beta precursor protein ISO protein:increased expression:hippocampus RGD PMID:16300758 RGD:10054281 NCBI chrNW_004624745:13,904,912...14,159,374
Ensembl chrNW_004624745:13,902,577...14,159,372 		JBrowse link
G Aqp4 aquaporin 4 ISO protein:increased expression:cerebral cortex RGD PMID:21083433 PMID:21488209 RGD:5148014 RGD:5148034 NCBI chrNW_004624770:5,581,192...5,593,470
Ensembl chrNW_004624770:5,580,808...5,594,628 		JBrowse link
G Asic1 acid sensing ion channel subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21307247 NCBI chrNW_004624816:2,228,440...2,253,798
Ensembl chrNW_004624816:2,228,440...2,253,004 		JBrowse link
G Astn1 astrotactin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14499481 NCBI chrNW_004624771:5,027,422...5,384,023
Ensembl chrNW_004624771:5,027,442...5,315,460 		JBrowse link
G Atg12 autophagy related 12 ISO protein:altered localization:brain RGD PMID:18059433 RGD:2301217 NCBI chrNW_004624733:6,046,073...6,056,321
Ensembl chrNW_004624733:6,045,432...6,060,784 		JBrowse link
G Atp5pd ATP synthase peripheral stalk subunit d treatment ISO RGD PMID:26813465 RGD:13800884 NCBI chrNW_004624801:4,857,689...4,863,249
Ensembl chrNW_004624801:4,857,692...4,861,430 		JBrowse link
G Avpr1a arginine vasopressin receptor 1A ISO mRNA:increased expression:cerebral cortex RGD PMID:17244947 RGD:2300372 NCBI chrNW_004624802:4,893,172...4,900,177
Ensembl chrNW_004624802:4,894,235...4,900,276 		JBrowse link
G Bad BCL2 associated agonist of cell death ISO mRNA, protein:increased expression:cerebral cortex RGD PMID:15941375 RGD:2292694 NCBI chrNW_004624767:22,025,721...22,037,283
Ensembl chrNW_004624767:22,026,133...22,037,277 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator treatment ISO RGD PMID:20888848 RGD:10054247 NCBI chrNW_004624832:5,050,222...5,068,565
Ensembl chrNW_004624832:5,050,222...5,055,506 		JBrowse link
G Bcat1 branched chain amino acid transaminase 1 ISO Protein:increased expression:neurons RGD PMID:10686349 RGD:631308 NCBI chrNW_004624752:14,074,701...14,166,075
Ensembl chrNW_004624752:14,106,884...14,164,064 		JBrowse link
G Bcl2 BCL2 apoptosis regulator treatment ISO RGD PMID:18093155 PMID:20888848 RGD:10054247 RGD:2293059 NCBI chrNW_004624792:8,854,345...9,032,727
Ensembl chrNW_004624792:8,859,522...9,031,344 		JBrowse link
G Bdnf brain derived neurotrophic factor ISO CTD Direct Evidence: marker/mechanism|therapeutic RGD
CTD		 PMID:15500971 PMID:20544832 PMID:21269288 RGD:4891136 NCBI chrNW_004624766:17,281,882...17,330,601
Ensembl chrNW_004624766:17,279,630...17,330,490 		JBrowse link
G Becn1 beclin 1 ISO protein:increased expression:brain
CTD Direct Evidence: therapeutic
protein:increased expression:neuron, astrocyte
protein:increased expression:hippocampus		 RGD
CTD		 PMID:16874043 PMID:18500386 PMID:24221859 PMID:34929507 RGD:11558018 RGD:6483098 RGD:6483314 NCBI chrNW_004624795:1,386,154...1,406,314
Ensembl chrNW_004624795:1,385,756...1,405,714 		JBrowse link
G Birc5 baculoviral IAP repeat containing 5 ISO mRNA, protein:increased expression:brain, astrocyte, neuron RGD PMID:15453988 RGD:2293136 NCBI chrNW_004624801:7,727,084...7,735,946
Ensembl chrNW_004624801:7,727,093...7,735,940 		JBrowse link
G Bmp6 bone morphogenetic protein 6 ISO protein:increased expression:brain, astrocyte, neuron RGD PMID:16388909 RGD:2289020 NCBI chrNW_004624756:17,742,822...17,894,931
Ensembl chrNW_004624756:17,743,834...17,894,753 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO mRNA:increased expression:dentate gyrus, neuron RGD PMID:9080432 RGD:5129488 NCBI chrNW_004624765:13,849,689...13,950,839
Ensembl chrNW_004624765:13,857,062...13,947,683 		JBrowse link
G Bysl bystin like ISO mRNA, protein:increased expression:substantia nigra, striatum (rat) RGD PMID:15305856 RGD:2316201 NCBI chrNW_004624754:17,195,248...17,204,827
Ensembl chrNW_004624754:17,195,251...17,205,198 		JBrowse link
G C1qa complement C1q A chain ISO RGD PMID:23808389 RGD:10054313 NCBI chrNW_004624764:7,363,615...7,366,408
Ensembl chrNW_004624764:7,363,567...7,366,617 		JBrowse link
G C3 complement C3 ISO RGD PMID:23808389 RGD:10054313 NCBI chrNW_004624828:3,773,816...3,798,077
Ensembl chrNW_004624828:3,770,221...3,797,946 		JBrowse link
G Cask calcium/calmodulin dependent serine protein kinase ISO RGD PMID:25089700 RGD:11576302 NCBI chrNW_004624762:13,723,347...14,106,844
Ensembl chrNW_004624762:13,722,691...14,106,844 		JBrowse link
G Casp8 caspase 8 ISO protein:altered localization RGD PMID:15590916 RGD:1624191 NCBI chrNW_004624899:427,064...450,931
Ensembl chrNW_004624899:424,363...451,087 		JBrowse link
G Cast calpastatin severity ISO mRNA:increased expression:cerebral cortex RGD PMID:15307896 RGD:5509821 NCBI chrNW_004624743:15,265,930...15,405,904
Ensembl chrNW_004624743:15,346,837...15,403,150 		JBrowse link
G Ccl20 C-C motif chemokine ligand 20 treatment ISO RGD PMID:22040257 RGD:7483630 NCBI chrNW_004624843:2,017,738...2,021,153 JBrowse link
G Cd14 CD14 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:21549006 NCBI chrNW_004624743:33,372,023...33,374,438
Ensembl chrNW_004624743:33,367,898...33,373,922 		JBrowse link
G Cd40 CD40 molecule treatment ISO RGD PMID:23924471 RGD:7248749 NCBI chrNW_004624790:8,475,640...8,485,927
Ensembl chrNW_004624790:8,476,158...8,485,856 		JBrowse link
G Cd40lg CD40 ligand treatment ISO RGD PMID:11755016 PMID:25972624 RGD:11344972 RGD:8547803 NCBI chrNW_004624808:10,472,028...10,484,407
Ensembl chrNW_004624808:10,472,572...10,484,338 		JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A ISO protein:increased expression:nucleus: RGD PMID:9914434 RGD:8662346 NCBI chrNW_004624754:21,109,074...21,115,869
Ensembl chrNW_004624754:21,108,874...21,115,885 		JBrowse link
G Cdkn1b cyclin dependent kinase inhibitor 1B ISO protein:decreased expression:cerebral cortex RGD PMID:21728064 RGD:10045359 NCBI chrNW_004624752:25,202,474...25,207,107
Ensembl chrNW_004624752:25,203,474...25,207,114 		JBrowse link
G Cebpa CCAAT enhancer binding protein alpha ISO mRNA, protein:increased expression:cerebral cortex (mouse) RGD PMID:19833158 RGD:10401206 NCBI chrNW_004624794:9,809,007...9,813,418 JBrowse link
G Cebpb CCAAT enhancer binding protein beta ISO CTD Direct Evidence: marker/mechanism
mRNA, protein:increased expression:cerebral cortex (mouse)		 CTD
RGD		 PMID:19833158 PMID:21549006 RGD:10401206 NCBI chrNW_004624790:5,367,808...5,369,686
Ensembl chrNW_004624790:5,368,349...5,369,377 		JBrowse link
G Cfb complement factor B ISO CTD Direct Evidence: marker/mechanism CTD PMID:17474994 NCBI chrNW_004624754:24,310,344...24,316,482
Ensembl chrNW_004624754:24,310,247...24,317,366 		JBrowse link
G Chrm2 cholinergic receptor muscarinic 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624765:17,211,162...17,342,505
Ensembl chrNW_004624765:17,333,678...17,340,421 		JBrowse link
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624768:908,907...1,024,953
Ensembl chrNW_004624768:909,099...1,024,902 		JBrowse link
G Clec4e C-type lectin domain family 4 member E ISO CTD Direct Evidence: marker/mechanism CTD PMID:21549006 NCBI chrNW_004624860:4,108,782...4,113,693
Ensembl chrNW_004624860:4,108,640...4,113,839 		JBrowse link
G Cnp 2',3'-cyclic nucleotide 3' phosphodiesterase ISO protein:increased expression:hippocampus RGD PMID:20215974 RGD:6483336 NCBI chrNW_004624795:1,856,455...1,861,142
Ensembl chrNW_004624795:1,855,992...1,861,053 		JBrowse link
G Comt catechol-O-methyltransferase ISO protein:increased expression:hippocampus RGD PMID:17240060 RGD:2289740 NCBI chrNW_004624747:569,127...588,479
Ensembl chrNW_004624747:581,832...588,333 		JBrowse link
G Crp C-reactive protein disease_progression ISO RGD PMID:24456846 RGD:9585646 NCBI chrNW_004624794:1,531,555...1,533,804
Ensembl chrNW_004624794:1,531,571...1,533,804 		JBrowse link
G Csf2 colony stimulating factor 2 disease_progression ISO RGD PMID:21515263 RGD:5686795 NCBI chrNW_004624733:40,039,127...40,041,294
Ensembl chrNW_004624733:40,039,414...40,041,294 		JBrowse link
G Csf3 colony stimulating factor 3 treatment ISO CTD Direct Evidence: marker/mechanism CTD
RGD		 PMID:21549006 PMID:24239694 RGD:11039431 NCBI chrNW_004624795:3,162,999...3,167,248
Ensembl chrNW_004624795:3,163,009...3,166,594 		JBrowse link
G Cspg4 chondroitin sulfate proteoglycan 4 ISO protein:altered expression:cerebral cortex RGD PMID:19473238 RGD:5686860 NCBI chrNW_004624894:564,252...595,048
Ensembl chrNW_004624894:561,683...594,878 		JBrowse link
G Cul5 cullin 5 ISO mRNA, protein:decreased expression:cerebral cortex, hippocampus RGD PMID:17010517 RGD:2301432 NCBI chrNW_004624784:2,736,462...2,822,854
Ensembl chrNW_004624784:2,736,490...2,820,564 		JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21549006 NCBI chrNW_004624757:14,989,241...14,991,650
Ensembl chrNW_004624757:14,989,084...14,991,910 		JBrowse link
G Dab2 DAB adaptor protein 2 ISO RGD PMID:15774263 RGD:7243841 NCBI chrNW_004624759:15,459,436...15,520,225
Ensembl chrNW_004624759:15,459,288...15,520,924 		JBrowse link
G Dnmt1 DNA methyltransferase 1 ISO RGD PMID:19429151 RGD:9588608 NCBI chrNW_004624828:2,316,042...2,358,866
Ensembl chrNW_004624828:2,315,251...2,358,711 		JBrowse link
G Dpysl2 dihydropyrimidinase like 2 ISO protein:increased degradation:cerebral cortex, hippocampus RGD PMID:17402852 RGD:2303056 NCBI chrNW_004624758:21,355,816...21,475,662
Ensembl chrNW_004624758:21,355,872...21,475,788 		JBrowse link
G Drd2 dopamine receptor D2 ISO RGD PMID:18509630 RGD:2311580 NCBI chrNW_004624784:8,828,589...8,906,617
Ensembl chrNW_004624784:8,827,006...8,865,529 		JBrowse link
G Dusp5 dual specificity phosphatase 5 ISO mRNA:increased expression:cerebral cortex RGD PMID:12503083 RGD:2317873 NCBI chrNW_004624737:35,785,133...35,798,201
Ensembl chrNW_004624737:35,784,852...35,798,382 		JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha ISO RGD PMID:11526986 RGD:10395358 NCBI chrNW_004624734:33,624,246...33,640,667
Ensembl chrNW_004624734:33,621,782...33,640,549 		JBrowse link
G Elk1 ETS transcription factor ELK1 ISO RGD PMID:15362724 RGD:7488910 NCBI chrNW_004624978:194,985...208,105
Ensembl chrNW_004624978:194,992...208,103 		JBrowse link
G Eno2 enolase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:34533065 NCBI chrNW_004624860:3,553,936...3,561,343
Ensembl chrNW_004624860:3,553,947...3,564,294 		JBrowse link
G Epas1 endothelial PAS domain protein 1 treatment ISO RGD PMID:22960363 RGD:10395371 NCBI chrNW_004624738:27,747,770...27,831,213
Ensembl chrNW_004624738:27,747,696...27,834,054 		JBrowse link
G Epha4 EPH receptor A4 ISO protein:increased expression, increased activity:astrocyte RGD PMID:22318127 RGD:5688763 NCBI chrNW_004624823:3,555,273...3,697,794
Ensembl chrNW_004624823:3,555,288...3,698,990 		JBrowse link
G Ephx2 epoxide hydrolase 2 ISO RGD PMID:21075124 RGD:5688356 NCBI chrNW_004624758:22,216,462...22,252,467
Ensembl chrNW_004624758:22,221,314...22,254,813 		JBrowse link
G Epor erythropoietin receptor ISO mRNA:increased expression:brain: RGD PMID:18093155 RGD:2293059 NCBI chrNW_004624828:3,181,772...3,187,242
Ensembl chrNW_004624828:3,181,957...3,187,231 		JBrowse link
G F2 coagulation factor II, thrombin severity ISO RGD PMID:21355766 RGD:5147766 NCBI chrNW_004624767:1,876,974...1,887,720
Ensembl chrNW_004624767:1,877,024...1,887,958 		JBrowse link
G Fas Fas cell surface death receptor ISO mRNA:increased expression:hippocampus
associated with Hyperoxia		 RGD PMID:16078565 PMID:19107989 RGD:1600354 RGD:8662854 NCBI chrNW_004624791:15,290,022...15,315,848
Ensembl chrNW_004624791:15,289,348...15,315,848 		JBrowse link
G Fgf2 fibroblast growth factor 2 ISO CTD Direct Evidence: therapeutic CTD PMID:21269288 NCBI chrNW_004624777:3,268,674...3,321,424
Ensembl chrNW_004624777:3,268,953...3,321,145 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 ISO protein:altered localization:hippocampus (rat) RGD PMID:16510718 RGD:11667962 NCBI chrNW_004624883:645,524...681,705
Ensembl chrNW_004624883:645,449...682,292 		JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:9630518 NCBI chrNW_004624734:26,424,053...26,427,431
Ensembl chrNW_004624734:26,423,079...26,427,732 		JBrowse link
G Foxp1 forkhead box P1 treatment ISO RGD PMID:26842647 RGD:11561903 NCBI chrNW_004624773:5,543,529...6,076,522
Ensembl chrNW_004624773:5,543,536...5,883,131 		JBrowse link
G G6pd glucose-6-phosphate dehydrogenase ISO protein:decreased expression:hippocampus RGD PMID:18501200 RGD:2307353 NCBI chrNW_004624946:989,376...1,001,787
Ensembl chrNW_004624946:986,107...1,001,955 		JBrowse link
G Gabrb3 gamma-aminobutyric acid type A receptor subunit beta3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624896:962,253...1,173,842
Ensembl chrNW_004624896:966,487...1,173,625 		JBrowse link
G Gabrg3 gamma-aminobutyric acid type A receptor subunit gamma3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624896:1,392,932...1,973,363 JBrowse link
G Gdnf glial cell derived neurotrophic factor ISO mRNA:increased expression:brain RGD PMID:18501516 RGD:2324932 NCBI chrNW_004624759:17,263,570...17,290,046
Ensembl chrNW_004624759:17,263,969...17,287,723 		JBrowse link
G Gja1 gap junction protein alpha 1 treatment ISO RGD PMID:23485053 RGD:8662424 NCBI chrNW_004624798:9,358,996...9,364,413
Ensembl chrNW_004624798:9,359,004...9,364,313 		JBrowse link
G Gja5 gap junction protein alpha 5 ISO protein:increased expression:cerebral artery RGD PMID:21895483 RGD:7207391 NCBI chrNW_004624772:16,810,723...16,828,328
Ensembl chrNW_004624772:16,813,011...16,814,084 		JBrowse link
G Gpx1 glutathione peroxidase 1 ISO mRNA:decreased expression:hippocampus, neuron RGD PMID:15791111 RGD:2306624 NCBI chrNW_004624730:3,313,773...3,314,870
Ensembl chrNW_004624730:3,313,972...3,314,626 		JBrowse link
G Grm8 glutamate metabotropic receptor 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624783:8,727,563...9,611,933
Ensembl chrNW_004624783:8,737,463...9,611,475 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO CTD Direct Evidence: marker/mechanism RGD
CTD		 PMID:22643085 PMID:24675465 RGD:10045646 NCBI chrNW_004624731:28,178,647...28,368,784
Ensembl chrNW_004624731:28,178,628...28,366,420 		JBrowse link
G Gsn gelsolin ISO RGD PMID:14588109 RGD:1599864 NCBI chrNW_004624760:13,943,680...14,004,660
Ensembl chrNW_004624760:13,943,888...13,969,905 		JBrowse link
G Hcn1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 ISO mRNA,protein:decreased expression:hippocampus: RGD PMID:11726545 RGD:9686434 NCBI chrNW_004624759:9,636,380...10,044,832
Ensembl chrNW_004624759:9,636,457...10,049,403 		JBrowse link
G Hmgb1 high mobility group box 1 treatment ISO RGD PMID:22915134 RGD:7245513 NCBI chrNW_004624776:7,858,400...7,862,716
Ensembl chrNW_004624776:7,793,259...7,863,184 		JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase ISO RGD PMID:18562561 RGD:5508455 NCBI chrNW_004624951:681,559...711,476
Ensembl chrNW_004624951:682,178...711,474 		JBrowse link
G Hmox1 heme oxygenase 1 ISO RGD PMID:23470432 RGD:10755702 NCBI chrNW_004624750:341,699...346,005
Ensembl chrNW_004624750:342,146...345,887 		JBrowse link
G Hspa4 heat shock protein family A (Hsp70) member 4 ISO protein:increased expression:cerebral white matter (rat) RGD PMID:22067617 RGD:5688785 NCBI chrNW_004624733:39,022,511...39,068,153
Ensembl chrNW_004624733:39,021,738...39,068,132 		JBrowse link
G Hspb1 heat shock protein family B (small) member 1 ISO RGD PMID:11746764 RGD:6480530 NCBI chrNW_004624740:14,940,161...14,941,561
Ensembl chrNW_004624740:14,939,445...14,941,819 		JBrowse link
G Htr7 5-hydroxytryptamine receptor 7 ISO RGD PMID:22465320 RGD:6482178 NCBI chrNW_004624737:1,960,985...2,067,086
Ensembl chrNW_004624737:1,960,057...2,067,038 		JBrowse link
G Icam1 intercellular adhesion molecule 1 ISO protein:increased expression:brain: RGD PMID:16230799 RGD:11522716 NCBI chrNW_004624828:2,432,584...2,451,997
Ensembl chrNW_004624828:2,432,550...2,453,071 		JBrowse link
G Igf1 insulin like growth factor 1 treatment ISO human protein in a rat model RGD PMID:9344566 RGD:12904928 NCBI chrNW_004624750:5,881,065...5,954,799
Ensembl chrNW_004624750:5,881,091...5,952,300 		JBrowse link
G Igf2 insulin like growth factor 2 ISO mRNA:decreased expression:brain RGD PMID:11123717 RGD:5509972 NCBI chrNW_004624767:14,969,977...14,997,577
Ensembl chrNW_004624767:14,969,866...14,979,026 		JBrowse link
G Il10 interleukin 10 severity
treatment		 ISO CTD Direct Evidence: marker/mechanism CTD
RGD		 PMID:21549006 PMID:23075771 PMID:23971414 RGD:7364822 RGD:7364983 NCBI chrNW_004624807:4,687,249...4,691,658
Ensembl chrNW_004624807:4,687,176...4,691,732 		JBrowse link
G Il12rb2 interleukin 12 receptor subunit beta 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624742:27,830,691...27,865,176
Ensembl chrNW_004624742:27,832,883...27,865,139 		JBrowse link
G Il13ra2 interleukin 13 receptor subunit alpha 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624940:825,368...842,268
Ensembl chrNW_004624940:819,854...842,284 		JBrowse link
G Il16 interleukin 16 ISO RGD PMID:17983426 RGD:5024939 NCBI chrNW_004624768:20,597,560...20,704,437 JBrowse link
G Il17rd interleukin 17 receptor D ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624822:150,955...219,939
Ensembl chrNW_004624822:150,992...214,107 		JBrowse link
G Il18 interleukin 18 severity ISO mRNA, protein:increased expression:brain RGD PMID:17188500 RGD:2315917 NCBI chrNW_004624784:7,294,286...7,312,959
Ensembl chrNW_004624784:7,294,183...7,304,687 		JBrowse link
G Il18r1 interleukin 18 receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624749:6,875,934...6,909,702
Ensembl chrNW_004624749:6,875,750...6,909,734 		JBrowse link
G Il1a interleukin 1 alpha ISO CTD Direct Evidence: marker/mechanism
mRNA, protein:increased expression:cerebral cortex		 CTD
RGD		 PMID:16024175 PMID:21549006 RGD:2311098 NCBI chrNW_004624749:12,795,967...12,805,658
Ensembl chrNW_004624749:12,795,946...12,805,154 		JBrowse link
G Il1b interleukin 1 beta ISO CTD Direct Evidence: marker/mechanism
mRNA, protein:increased expression:cerebral cortex
mRNA, protein:increased expression:brain
protein:increased expression:brain, cerebrospinal fluid		 CTD
RGD		 PMID:16024175 PMID:17612572 PMID:19800810 PMID:21549006 PMID:22503903 RGD:1626652 RGD:2311098 RGD:6482651 NCBI chrNW_004624749:12,852,128...12,858,478
Ensembl chrNW_004624749:12,852,021...12,858,760 		JBrowse link
G Il1r1 interleukin 1 receptor type 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21549006 NCBI chrNW_004624749:6,661,142...6,737,988
Ensembl chrNW_004624749:6,708,522...6,739,871 		JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO CTD Direct Evidence: therapeutic CTD PMID:25665855 NCBI chrNW_004624749:13,210,365...13,224,471
Ensembl chrNW_004624749:13,210,476...13,225,890 		JBrowse link
G Il2 interleukin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624777:2,885,537...2,890,453
Ensembl chrNW_004624777:2,885,535...2,890,453 		JBrowse link
G Il31ra interleukin 31 receptor A ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624759:3,349,783...3,415,704
Ensembl chrNW_004624759:3,355,067...3,414,823 		JBrowse link
G Il4 interleukin 4 ISO protein:decreased expression:plasma RGD PMID:24519543 RGD:10402802 NCBI chrNW_004624733:39,412,800...39,420,079 JBrowse link
G Il5 interleukin 5 treatment ISO RGD PMID:24530657 PMID:24602693 RGD:11522766 RGD:11522770 NCBI chrNW_004624733:39,544,487...39,558,943
Ensembl chrNW_004624733:39,556,797...39,559,119 		JBrowse link
G Il6 interleukin 6 ISO CTD Direct Evidence: marker/mechanism
protein:increased expression:cerebrospinal fluid (rat)		 CTD
RGD		 PMID:10027774 PMID:19800810 PMID:21549006 PMID:23159883 RGD:11049549 NCBI chrNW_004624739:7,957,709...7,963,414
Ensembl chrNW_004624739:7,957,674...7,962,318 		JBrowse link
G Il7 interleukin 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624744:12,562,536...12,604,037
Ensembl chrNW_004624744:12,567,661...12,604,074 		JBrowse link
G Il9r interleukin 9 receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624913:906,953...918,906
Ensembl chrNW_004624913:908,644...920,658 		JBrowse link
G Irf1 interferon regulatory factor 1 ISO mRNA:increased expression:cerebral cortex
CTD Direct Evidence: marker/mechanism		 RGD
CTD		 PMID:12503083 PMID:21549006 RGD:2317873 NCBI chrNW_004624733:39,596,565...39,603,428
Ensembl chrNW_004624733:39,596,501...39,603,526 		JBrowse link
G Jak2 Janus kinase 2 ISO RGD PMID:21596098 RGD:6483023 NCBI chrNW_004624736:9,724,876...9,827,364
Ensembl chrNW_004624736:9,724,369...9,830,365 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:21549006 NCBI chrNW_004624862:1,537,886...1,540,633
Ensembl chrNW_004624862:1,538,455...1,539,426 		JBrowse link
G Kcnj10 potassium inwardly rectifying channel subfamily J member 10 ISO RGD PMID:20861444 RGD:8662901 NCBI chrNW_004624794:1,180,822...1,211,781
Ensembl chrNW_004624794:1,180,834...1,212,456 		JBrowse link
G Kdr kinase insert domain receptor ISO protein:increased expression:cerebral cortex RGD PMID:19733172 PMID:21307798 RGD:5684382 RGD:5684402 NCBI chrNW_004624761:14,330,224...14,380,680
Ensembl chrNW_004624761:14,330,489...14,379,051 		JBrowse link
G Lep leptin ISO RGD PMID:21276361 RGD:5128517 NCBI chrNW_004624783:7,708,820...7,721,610
Ensembl chrNW_004624783:7,708,588...7,721,727 		JBrowse link
G LOC101704598 cholesterol side-chain cleavage enzyme, mitochondrial ISO mRNA:increased expression:hindbrain RGD PMID:16329132 RGD:1599699 NCBI chrNW_004624781:288,594...298,876
Ensembl chrNW_004624781:288,594...300,429 		JBrowse link
G LOC101719398 serotransferrin ISO RGD PMID:22538758 RGD:7244386 NCBI chrNW_004624730:10,078,165...10,109,349 JBrowse link
G Lsg1 large 60S subunit nuclear export GTPase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14499481 NCBI chrNW_004624730:63,218,010...63,243,028
Ensembl chrNW_004624730:63,218,107...63,241,964 		JBrowse link
G Ly86 lymphocyte antigen 86 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21549006 NCBI chrNW_004624756:18,770,503...18,821,191
Ensembl chrNW_004624756:18,770,503...18,820,672 		JBrowse link
G Mag myelin associated glycoprotein susceptibility ISO RGD PMID:17156367 RGD:9685230 NCBI chrNW_004624794:8,237,005...8,251,933
Ensembl chrNW_004624794:8,236,223...8,258,361 		JBrowse link
G Map1b microtubule associated protein 1B ISO protein:increased expression, increased phosphorylation:brain RGD PMID:10906717 RGD:2304029 NCBI chrNW_004624905:1,198,157...1,304,128
Ensembl chrNW_004624905:1,198,205...1,304,309 		JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha ISO RGD PMID:24221859 RGD:11558018 NCBI chrNW_004624842:4,800,533...4,802,235
Ensembl chrNW_004624842:4,800,539...4,802,094 		JBrowse link
G Map2 microtubule associated protein 2 ISO protein:decreased expression:cerebral cortex, neuron RGD PMID:20568963 PMID:21401443 RGD:6483087 RGD:6483089 NCBI chrNW_004624765:6,476,544...6,758,959
Ensembl chrNW_004624765:6,476,346...6,546,116 		JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 treatment ISO associated with Subarachnoid Hemorrhage RGD PMID:26100626 PMID:27000704 PMID:33414375 RGD:155791672 RGD:155804286 RGD:155882440 NCBI chrNW_004624799:3,554,644...3,623,317
Ensembl chrNW_004624799:3,554,678...3,622,289 		JBrowse link
G Mbl2 mannose binding lectin 2 disease_progression ISO RGD PMID:18183030 RGD:12910935 NCBI chrNW_004624791:10,881,319...10,886,294
Ensembl chrNW_004624791:10,881,268...10,886,297 		JBrowse link
G Mbp myelin basic protein ISO RGD PMID:18583256 RGD:7349333 NCBI chrNW_004624806:3,465,881...3,587,428
Ensembl chrNW_004624806:3,489,681...3,588,335 		JBrowse link
G Mif macrophage migration inhibitory factor ISO RGD PMID:15922484 RGD:1641989 NCBI chrNW_004624747:10,307,826...10,308,649
Ensembl chrNW_004624747:10,303,919...10,308,821 		JBrowse link
G Mmp9 matrix metallopeptidase 9 treatment ISO CTD Direct Evidence: marker/mechanism RGD
CTD		 PMID:16671440 PMID:19631748 PMID:24661104 RGD:13207312 RGD:1582656 NCBI chrNW_004624790:8,584,399...8,591,763
Ensembl chrNW_004624790:8,583,457...8,591,713 		JBrowse link
G Mpo myeloperoxidase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624871:121,026...131,433
Ensembl chrNW_004624871:121,026...131,323 		JBrowse link
G Myoc myocilin ISO mRNA:increased expression:cerebral cortex (rat) RGD PMID:12799138 RGD:7401267 NCBI chrNW_004624771:10,066,170...10,080,257
Ensembl chrNW_004624771:10,065,788...10,080,680 		JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 ISO protein:increased expression:lung: RGD PMID:18787991 PMID:25089700 RGD:11576302 RGD:5134971 NCBI chrNW_004624787:14,355,330...14,381,353
Ensembl chrNW_004624787:14,355,791...14,381,251 		JBrowse link
G Ngb neuroglobin severity ISO RGD PMID:21915648 RGD:9743963 NCBI chrNW_004624734:24,640,389...24,645,041
Ensembl chrNW_004624734:24,640,181...24,647,243 		JBrowse link
G Ngfr nerve growth factor receptor treatment ISO RGD PMID:23940017 RGD:10414074 NCBI chrNW_004624795:5,623,686...5,639,545
Ensembl chrNW_004624795:5,623,700...5,639,655 		JBrowse link
G Nos2 nitric oxide synthase 2 ISO RGD PMID:11526986 RGD:10395358 NCBI chrNW_004624786:491,944...530,427
Ensembl chrNW_004624786:489,311...528,271 		JBrowse link
G Nox4 NADPH oxidase 4 ISO CTD Direct Evidence: therapeutic CTD PMID:36762617 NCBI chrNW_004624845:669,880...829,471
Ensembl chrNW_004624845:669,902...827,834 		JBrowse link
G Nppb natriuretic peptide B ISO associated with lung diseases;protein:increased expression:serum:
CTD Direct Evidence: therapeutic		 RGD
CTD		 PMID:19803787 PMID:23837838 RGD:7247620 NCBI chrNW_004624818:1,139,776...1,141,010 JBrowse link
G Npy neuropeptide Y ISO protein:increased expression:adrenal medulla RGD PMID:23570732 RGD:10448961 NCBI chrNW_004624739:6,277,704...6,285,454
Ensembl chrNW_004624739:6,277,612...6,285,397 		JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 treatment ISO associated with Subarachnoid Hemorrhage
mRNA:increased expression:lung		 RGD PMID:18787991 PMID:20864352 RGD:11035222 RGD:5134971 NCBI chrNW_004624746:16,684,620...16,698,194
Ensembl chrNW_004624746:16,684,407...16,697,479 		JBrowse link
G Nt5e 5'-nucleotidase ecto ISO protein:altered expression:cerebral cortex (rat) RGD PMID:21337375 RGD:5134348 NCBI chrNW_004624799:8,766,608...8,845,296
Ensembl chrNW_004624799:8,765,711...8,845,778 		JBrowse link
G P2ry1 purinergic receptor P2Y1 ISO protein:increased expression:brain, astrocyte RGD PMID:19115395 RGD:2315811 NCBI chrNW_004624730:30,470,894...30,478,269
Ensembl chrNW_004624730:30,471,610...30,476,941 		JBrowse link
G Palld palladin, cytoskeletal associated protein ISO protein:increased expression:brain, astrocyte RGD PMID:12932445 RGD:2325786 NCBI chrNW_004624769:150,800...560,163
Ensembl chrNW_004624769:150,738...559,045 		JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17640816 NCBI chrNW_004624807:446,662...478,571
Ensembl chrNW_004624807:446,647...479,069 		JBrowse link
G Pawr pro-apoptotic WT1 regulator ISO mRNA,protein:increased expression:brain: RGD PMID:11421591 RGD:9835358 NCBI chrNW_004624750:18,562,270...18,710,397
Ensembl chrNW_004624750:18,562,221...18,705,540 		JBrowse link
G Pdgfa platelet derived growth factor subunit A ISO mRNA:increased expression:cerebral cortex, hippocampus RGD PMID:9645955 RGD:11084932 NCBI chrNW_004624740:26,172,808...26,191,557
Ensembl chrNW_004624740:26,169,064...26,188,866 		JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO mRNA:increased expression:cerebral cortex, hippocampus RGD PMID:9645955 RGD:11084932 NCBI chrNW_004624752:9,072,471...9,088,289
Ensembl chrNW_004624752:9,072,512...9,088,593 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha ISO mRNA:increased expression:cerebral cortex, hippocampus RGD PMID:9645955 RGD:11084932 NCBI chrNW_004624761:15,223,789...15,269,685
Ensembl chrNW_004624761:15,225,356...15,269,810 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta ISO mRNA:increased expression:cerebral cortex, hippocampus RGD PMID:9645955 RGD:11084932 NCBI chrNW_004624774:9,432,765...9,469,690
Ensembl chrNW_004624774:9,432,541...9,469,881 		JBrowse link
G Pecam1 platelet and endothelial cell adhesion molecule 1 ISO RGD PMID:22658532 RGD:6484732 NCBI chrNW_004624870:33,293...122,536 JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21549006 NCBI chrNW_004624832:7,220,739...7,225,146
Ensembl chrNW_004624832:7,221,064...7,224,615 		JBrowse link
G Pgr progesterone receptor ISO RGD PMID:23211561 RGD:7248711 NCBI chrNW_004624878:1,714,196...1,769,302
Ensembl chrNW_004624878:1,714,559...1,762,421 		JBrowse link
G Phb1 prohibitin 1 ISO protein:increased oxidation:cerebral cortex RGD PMID:17518533 RGD:2292409 NCBI chrNW_004624795:5,556,728...5,565,969
Ensembl chrNW_004624795:5,556,450...5,565,988 		JBrowse link
G Phb2 prohibitin 2 ISO RGD PMID:24566151 RGD:12903261 NCBI chrNW_004624860:3,599,435...3,605,016
Ensembl chrNW_004624860:3,599,687...3,604,872 		JBrowse link
G Pias1 protein inhibitor of activated STAT 1 ISO protein:decreased expression:brain, nucleus RGD PMID:21545521 RGD:8693413 NCBI chrNW_004624781:4,893,308...5,046,928
Ensembl chrNW_004624781:4,893,308...5,046,582 		JBrowse link
G Ppara peroxisome proliferator activated receptor alpha ISO agonist more effective in combination with simvastatin RGD PMID:18562561 RGD:5508455 NCBI chrNW_004624752:3,646,499...3,702,553
Ensembl chrNW_004624752:3,650,922...3,701,672 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha treatment ISO protein:decreased expression:frontal cortex (rat) RGD PMID:22642418 PMID:24345766 RGD:10059630 RGD:6484257 NCBI chrNW_004624755:7,826,219...8,460,746
Ensembl chrNW_004624755:8,375,596...8,465,297 		JBrowse link
G Ppp3ca protein phosphatase 3 catalytic subunit alpha ISO CTD Direct Evidence: marker/mechanism
protein: :hippocampus 		CTD
RGD		 PMID:14499481 PMID:19751097 RGD:6483311 NCBI chrNW_004624830:6,318,352...6,584,232
Ensembl chrNW_004624830:6,317,968...6,581,892 		JBrowse link
G Prf1 perforin 1 ISO RGD PMID:20537642 RGD:6482807 NCBI chrNW_004624754:4,679,451...4,681,627
Ensembl chrNW_004624754:4,679,521...4,681,627 		JBrowse link
G Ptger3 prostaglandin E receptor 3 ISO protein:increased expression:striatum, microglia (rat) RGD PMID:15234107 RGD:9850280 NCBI chrNW_004624742:25,177,340...25,356,911 JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 ISO protein:increased expression:microglia, macrophage
protein:increased expression:microglial cells, macrophage, endothelial cell		 RGD PMID:11565600 PMID:12005397 PMID:19719848 RGD:5688162 RGD:5688239 RGD:5688242 NCBI chrNW_004624760:12,917,244...12,937,858
Ensembl chrNW_004624760:12,915,206...12,937,824 		JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 ISO CTD Direct Evidence: marker/mechanism RGD
CTD		 PMID:12410334 PMID:19719848 PMID:20810888 PMID:21549006 PMID:21866634 RGD:5508191 RGD:5688162 NCBI chrNW_004624814:6,897,818...6,904,890
Ensembl chrNW_004624814:6,897,857...6,903,728 		JBrowse link
G Ptprz1 protein tyrosine phosphatase receptor type Z1 ISO RGD PMID:12088737 RGD:727637 NCBI chrNW_004624783:13,911,525...14,105,403
Ensembl chrNW_004624783:13,912,332...14,105,292 		JBrowse link
G Rchy1 ring finger and CHY zinc finger domain containing 1 ISO protein:increased expression:cerebral cortex RGD PMID:21728064 RGD:10045359 NCBI chrNW_004624730:322,448...342,454 JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit ISO protein:increased expression:ileum RGD PMID:18288455 RGD:2298787 NCBI chrNW_004624767:20,732,813...20,742,016
Ensembl chrNW_004624767:20,732,938...20,741,272 		JBrowse link
G Ret ret proto-oncogene ISO mRNA:increased expression:brain RGD PMID:18501516 RGD:2324932 NCBI chrNW_004624922:382,462...413,227
Ensembl chrNW_004624922:382,399...413,281 		JBrowse link
G Rhoa ras homolog family member A ISO protein:increased expression:microglial cell, brain RGD PMID:17929039 RGD:2298888 NCBI chrNW_004624730:3,316,122...3,361,820 JBrowse link
G Robo1 roundabout guidance receptor 1 ISO mRNA:increased expression:brain
protein:increased expression:brain, immune cell		 RGD PMID:16262652 PMID:26550694 RGD:2316136 RGD:243048437 NCBI chrNW_004624874:4,234,640...5,359,333
Ensembl chrNW_004624874:4,949,538...5,357,690 		JBrowse link
G Robo2 roundabout guidance receptor 2 ISO mRNA:increased expression:brain RGD PMID:16262652 RGD:2316136 NCBI chrNW_004624745:800,963...2,121,445
Ensembl chrNW_004624745:804,797...1,390,551 		JBrowse link
G Robo3 roundabout guidance receptor 3 ISO mRNA:increased expression:brain RGD PMID:16262652 RGD:2316136 NCBI chrNW_004624927:872,197...887,316
Ensembl chrNW_004624927:872,197...887,079 		JBrowse link
G Rps27a ribosomal protein S27a ISO mRNA:decreased expression:cerebral cortex, hippocampus RGD PMID:17936732 RGD:11041870 NCBI chrNW_004624833:6,309,342...6,311,762
Ensembl chrNW_004624833:6,291,446...6,311,671 		JBrowse link
G S100b S100 calcium binding protein B severity ISO CTD Direct Evidence: marker/mechanism|therapeutic RGD
CTD		 PMID:11520488 PMID:21783483 PMID:21976236 RGD:5508761 NCBI chrNW_004624745:31,645,927...31,652,846
Ensembl chrNW_004624745:31,645,927...31,652,832 		JBrowse link
G Sele selectin E ISO protein:increased expression:brain RGD PMID:19107536 RGD:2313599 NCBI chrNW_004624826:7,624,852...7,635,330
Ensembl chrNW_004624826:7,626,380...7,635,309 		JBrowse link
G Serpinc1 serpin family C member 1 ISO CTD Direct Evidence: therapeutic CTD PMID:21534203 NCBI chrNW_004624771:7,955,778...7,966,637
Ensembl chrNW_004624771:7,955,739...7,966,637 		JBrowse link
G Serpinf1 serpin family F member 1 treatment ISO human gene in a rat model
protein:altered expression:cerebellum (rat)		 RGD PMID:17709187 PMID:20142768 RGD:8612994 RGD:8622925 NCBI chrNW_004624786:4,487,005...4,497,706
Ensembl chrNW_004624786:4,486,978...4,497,585 		JBrowse link
G Sirt1 sirtuin 1 treatment ISO RGD PMID:17970622 RGD:9497541 NCBI chrNW_004624754:2,304,476...2,332,705
Ensembl chrNW_004624754:2,304,634...2,330,946 		JBrowse link
G Skp2 S-phase kinase associated protein 2 ISO protein:increased expression:brain RGD PMID:19852587 RGD:2315049 NCBI chrNW_004624759:18,796,055...18,858,692
Ensembl chrNW_004624759:18,830,323...18,858,712 		JBrowse link
G Slc18a3 solute carrier family 18 member A3 ISO protein:decreased expression:brain RGD PMID:18848922 RGD:5686682 NCBI chrNW_004624928:403,114...405,560
Ensembl chrNW_004624928:403,503...405,095 		JBrowse link
G Slit1 slit guidance ligand 1 ISO mRNA:increased expression:brain RGD PMID:16262652 RGD:2316136 NCBI chrNW_004624737:8,458,444...8,632,316
Ensembl chrNW_004624737:8,460,508...8,632,302 		JBrowse link
G Slit2 slit guidance ligand 2 exacerbates ISO RGD PMID:26550694 RGD:243048437 NCBI chrNW_004624755:11,470,810...11,819,800
Ensembl chrNW_004624755:11,472,377...11,819,266 		JBrowse link
G Slit3 slit guidance ligand 3 ISO mRNA:increased expression:brain RGD PMID:16262652 RGD:2316136 NCBI chrNW_004624733:20,683,680...21,293,663
Ensembl chrNW_004624733:20,683,814...21,291,088 		JBrowse link
G Snca synuclein alpha ISO RGD PMID:14637093 PMID:25089700 RGD:11576302 RGD:6480195 NCBI chrNW_004624757:17,393,046...17,528,783
Ensembl chrNW_004624757:17,392,998...17,528,320 		JBrowse link
G Sncb synuclein beta ISO RGD PMID:14637093 RGD:6480195 NCBI chrNW_004624733:13,506,181...13,513,979
Ensembl chrNW_004624733:13,506,180...13,513,712 		JBrowse link
G Sncg synuclein gamma ISO RGD PMID:14637093 RGD:6480195 NCBI chrNW_004624841:192,396...196,568
Ensembl chrNW_004624841:192,398...196,064 		JBrowse link
G Snw1 SNW domain containing 1 ISO mRNA, protein:increased expression:cerebral cortex (rat) RGD PMID:22965216 RGD:11035237 NCBI chrNW_004624734:24,161,974...24,191,943
Ensembl chrNW_004624734:24,161,662...24,191,937 		JBrowse link
G Sod1 superoxide dismutase 1 ISO RGD PMID:16248885 RGD:1581214 NCBI chrNW_004624745:20,032,003...20,037,958
Ensembl chrNW_004624745:20,032,011...20,037,958 		JBrowse link
G Sod2 superoxide dismutase 2 ISO CTD Direct Evidence: therapeutic CTD
RGD		 PMID:16248885 PMID:24462953 RGD:1581214 NCBI chrNW_004624855:3,260,800...3,271,864
Ensembl chrNW_004624855:3,260,809...3,271,367 		JBrowse link
G Sparc secreted protein acidic and cysteine rich ISO mRNA:increased expression:brain, blood vessel RGD PMID:9704602 RGD:2300066 NCBI chrNW_004624733:37,348,993...37,369,804
Ensembl chrNW_004624733:37,338,284...37,369,804 		JBrowse link
G Sstr2 somatostatin receptor 2 ISO RGD PMID:11879809 RGD:2325002 NCBI chrNW_004624801:3,198,137...3,205,936
Ensembl chrNW_004624801:3,198,204...3,206,481 		JBrowse link
G Sstr3 somatostatin receptor 3 ISO RGD PMID:11879809 RGD:2325002 NCBI chrNW_004624752:10,623,360...10,626,759
Ensembl chrNW_004624752:10,619,078...10,626,754 		JBrowse link
G Stat1 signal transducer and activator of transcription 1 ISO RGD PMID:21596098 RGD:6483023 NCBI chrNW_004624854:5,067,578...5,106,052
Ensembl chrNW_004624854:5,067,535...5,102,106 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO protein:increased phosphorylation:brain RGD PMID:21596098 PMID:22145815 PMID:22827467 RGD:6483023 RGD:6892706 RGD:8694312 NCBI chrNW_004624795:1,648,235...1,680,788
Ensembl chrNW_004624795:1,648,080...1,681,200 		JBrowse link
G Strn striatin ISO RGD PMID:16351572 RGD:2311293 NCBI chrNW_004624738:18,474,603...18,585,109
Ensembl chrNW_004624738:18,476,522...18,585,160 		JBrowse link
G Tardbp TAR DNA binding protein ISO RGD PMID:22101322 RGD:5687195 NCBI chrNW_004624818:1,759,496...1,789,806
Ensembl chrNW_004624818:1,759,497...1,789,813 		JBrowse link
G Th tyrosine hydroxylase ISO protein:decreased activity:striatum (rat) RGD PMID:21047500 RGD:5128822 NCBI chrNW_004624767:15,003,073...15,010,207
Ensembl chrNW_004624767:15,003,092...15,010,154 		JBrowse link
G Thbd thrombomodulin onset ISO RGD PMID:17895610 RGD:5685007 NCBI chrNW_004624741:22,880,481...22,883,962 JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 ISO mRNA:increased expression:brain, astrocytes RGD PMID:10719361 RGD:2290468 NCBI chrNW_004624978:120,723...125,006
Ensembl chrNW_004624978:121,803...124,912 		JBrowse link
G Timp2 TIMP metallopeptidase inhibitor 2 ISO mRNA:increased expression:brain, neuron, microglial cell RGD PMID:10719361 RGD:2290468 NCBI chrNW_004624801:8,228,618...8,270,606
Ensembl chrNW_004624801:8,228,357...8,270,982 		JBrowse link
G Tjp1 tight junction protein 1 ISO RGD PMID:19889224 RGD:2325128 NCBI chrNW_004624768:2,826,848...3,034,195
Ensembl chrNW_004624768:2,828,324...3,034,302 		JBrowse link
G Tlr1 toll like receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21549006 NCBI chrNW_004624840:7,287,772...7,349,282
Ensembl chrNW_004624840:7,287,781...7,290,162 		JBrowse link
G Tlr2 toll like receptor 2 ISO mRNA:increased expression:brain
CTD Direct Evidence: marker/mechanism		 RGD
CTD		 PMID:18316784 PMID:21549006 RGD:2312713 NCBI chrNW_004624858:4,931,820...4,984,175
Ensembl chrNW_004624858:4,979,485...4,981,833 		JBrowse link
G Tlr4 toll like receptor 4 ISO CTD Direct Evidence: marker/mechanism
mRNA:increased expression:brain		 CTD
RGD		 PMID:18316784 PMID:21549006 RGD:2312713 NCBI chrNW_004624760:17,596,516...17,608,955
Ensembl chrNW_004624760:17,598,630...17,609,120 		JBrowse link
G Tnf tumor necrosis factor ISO CTD Direct Evidence: marker/mechanism CTD
RGD		 PMID:10674461 PMID:19800810 PMID:21549006 RGD:13825262 NCBI chrNW_004624754:24,623,059...24,625,647
Ensembl chrNW_004624754:24,623,425...24,625,531 		JBrowse link
G Tnfrsf13b TNF receptor superfamily member 13B ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624849:4,468,365...4,511,891
Ensembl chrNW_004624849:4,498,388...4,511,593 		JBrowse link
G Tnfrsf13c TNF receptor superfamily member 13C ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624752:6,797,453...6,799,437
Ensembl chrNW_004624752:6,797,983...6,799,097 		JBrowse link
G Tnfrsf14 TNF receptor superfamily member 14 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624818:7,491,473...7,505,185 JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A ISO CTD Direct Evidence: marker/mechanism
protein:increased expression:brain		 CTD
RGD		 PMID:17074049 PMID:21549006 RGD:1624183 NCBI chrNW_004624860:3,111,244...3,123,041
Ensembl chrNW_004624860:3,111,630...3,122,711 		JBrowse link
G Tnfsf10 TNF superfamily member 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624730:50,534,284...50,550,279
Ensembl chrNW_004624730:50,531,915...50,550,528 		JBrowse link
G Tnfsf12 TNF superfamily member 12 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624786:10,165,694...10,176,042
Ensembl chrNW_004624786:10,166,168...10,175,433 		JBrowse link
G Traf4 TNF receptor associated factor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23159883 NCBI chrNW_004624786:1,314,797...1,321,080
Ensembl chrNW_004624786:1,314,817...1,321,080 		JBrowse link
G Trpm2 transient receptor potential cation channel subfamily M member 2 ISO mRNA, protein:increased expression:cerebral cortex, hippocampus RGD PMID:20309649 RGD:9999437 NCBI chrNW_004624745:29,757,267...29,809,607
Ensembl chrNW_004624745:29,757,106...29,806,795 		JBrowse link
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 ISO mRNA:decreased expression:cerebral cortex, hippocampus (rat) RGD PMID:17936732 RGD:11041870 NCBI chrNW_004624908:1,745,903...1,748,750
Ensembl chrNW_004624908:1,736,899...1,750,516 		JBrowse link
G Ucp2 uncoupling protein 2 ISO CTD Direct Evidence: therapeutic CTD
RGD		 PMID:12858170 RGD:7204436 NCBI chrNW_004624817:3,067,358...3,075,045
Ensembl chrNW_004624817:3,067,320...3,075,043 		JBrowse link
G Vegfa vascular endothelial growth factor A ISO CTD Direct Evidence: therapeutic CTD
RGD		 PMID:12230324 PMID:18065154 RGD:1580574 NCBI chrNW_004624754:15,929,414...15,943,637 JBrowse link
G Vegfb vascular endothelial growth factor B ISO mRNA, protein:increased expression:brain RGD PMID:12230324 RGD:1580574 NCBI chrNW_004624767:22,068,107...22,071,731
Ensembl chrNW_004624767:22,068,107...22,071,491 		JBrowse link
G Vim vimentin ISO protein:increased expression:brain RGD PMID:15527750 PMID:19728994 RGD:6480519 RGD:6480527 NCBI chrNW_004624796:10,624,672...10,632,300
Ensembl chrNW_004624796:10,623,929...10,632,600 		JBrowse link
G Xdh xanthine dehydrogenase treatment ISO RGD PMID:26528358 RGD:13208950 NCBI chrNW_004624738:13,116,317...13,180,935
Ensembl chrNW_004624738:13,115,982...13,181,352 		JBrowse link
Chronic Brain Injury term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E susceptibility ISO DNA:polymorphism:exon: RGD PMID:9214529 RGD:7495763 NCBI chrNW_004624907:1,752,322...1,755,308 JBrowse link
G Tardbp TAR DNA binding protein ISO protein:increased expression:brain RGD PMID:20720505 RGD:5687179 NCBI chrNW_004624818:1,759,496...1,789,806
Ensembl chrNW_004624818:1,759,497...1,789,813 		JBrowse link
Closed Head Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 ISO protein:increased expression:neuron RGD PMID:16004578 RGD:6483315 NCBI chrNW_004624795:1,386,154...1,406,314
Ensembl chrNW_004624795:1,385,756...1,405,714 		JBrowse link
G Gfap glial fibrillary acidic protein ISO RGD PMID:8833197 RGD:6480531 NCBI chrNW_004624795:395,298...400,781
Ensembl chrNW_004624795:394,436...401,231 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 ISO human protein in a rat model RGD PMID:17014847 RGD:13504858 NCBI chrNW_004624737:11,114,818...11,153,209
Ensembl chrNW_004624737:11,115,066...11,153,211 		JBrowse link
G Igf1 insulin like growth factor 1 ISO protein:decreased expression:serum: RGD PMID:12002507 RGD:8548865 NCBI chrNW_004624750:5,881,065...5,954,799
Ensembl chrNW_004624750:5,881,091...5,952,300 		JBrowse link
G Igfbp3 insulin like growth factor binding protein 3 ISO protein:decreased expression:serum: RGD PMID:12002507 RGD:8548865 NCBI chrNW_004624740:6,878,818...6,886,512
Ensembl chrNW_004624740:6,877,348...6,886,512 		JBrowse link
G Vim vimentin ISO RGD PMID:8833197 RGD:6480531 NCBI chrNW_004624796:10,624,672...10,632,300
Ensembl chrNW_004624796:10,623,929...10,632,600 		JBrowse link
Corneal Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tp63 tumor protein p63 ISO RGD PMID:12167247 RGD:11568649 NCBI chrNW_004624730:67,283,444...67,489,808
Ensembl chrNW_004624730:67,286,160...67,489,670 		JBrowse link
Corneal Perforation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifng interferon gamma ISO mRNA,protein:increased expression:corneal RGD PMID:15832292 RGD:8157597 NCBI chrNW_004624802:163,261...166,534
Ensembl chrNW_004624802:163,261...166,534 		JBrowse link
Cranial Nerve Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISO mRNA:increased expression:superior cervical ganglion RGD PMID:16420416 RGD:2289006 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Cx3cl1 C-X3-C motif chemokine ligand 1 ISO RGD PMID:15153618 RGD:4891994 NCBI chrNW_004624746:28,677,956...28,688,638
Ensembl chrNW_004624746:28,677,709...28,689,122 		JBrowse link
Diffuse Brain Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G S100b S100 calcium binding protein B ISO CTD Direct Evidence: marker/mechanism CTD PMID:30076900 NCBI chrNW_004624745:31,645,927...31,652,846
Ensembl chrNW_004624745:31,645,927...31,652,832 		JBrowse link
Eye Burns term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il10 interleukin 10 treatment ISO RGD PMID:22553604 RGD:7364851 NCBI chrNW_004624807:4,687,249...4,691,658
Ensembl chrNW_004624807:4,687,176...4,691,732 		JBrowse link
G Il1b interleukin 1 beta ISO protein:increased expression:retina RGD PMID:9618720 RGD:7794723 NCBI chrNW_004624749:12,852,128...12,858,478
Ensembl chrNW_004624749:12,852,021...12,858,760 		JBrowse link
G Pparg peroxisome proliferator activated receptor gamma ISO protein:increased expression:cornea, neutrophil, macrophage (rat) RGD PMID:24194635 RGD:8552904 NCBI chrNW_004624956:84,673...207,176
Ensembl chrNW_004624956:83,842...149,481 		JBrowse link
Eye Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 ISO protein:increased expression:lens RGD PMID:15273655 RGD:8655664 NCBI chrNW_004624777:3,268,674...3,321,424
Ensembl chrNW_004624777:3,268,953...3,321,145 		JBrowse link
G Pparg peroxisome proliferator activated receptor gamma treatment ISO RGD PMID:18658087 RGD:8552893 NCBI chrNW_004624956:84,673...207,176
Ensembl chrNW_004624956:83,842...149,481 		JBrowse link
Facial Nerve Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcyap1 adenylate cyclase activating polypeptide 1 ISO mRNA:increased expression:facial VII nucleus RGD PMID:19427307 RGD:2325258 NCBI chrNW_004624770:11,359,606...11,375,833
Ensembl chrNW_004624770:11,358,286...11,375,813 		JBrowse link
G Atf2 activating transcription factor 2 ISO RGD PMID:9813301 RGD:10047413 NCBI chrNW_004624787:12,241,838...12,338,089 JBrowse link
G Ccr3 C-C motif chemokine receptor 3 ISO RGD PMID:19922414 RGD:6892922 NCBI chrNW_004624730:74,768,668...74,769,749
Ensembl chrNW_004624730:74,768,668...74,769,798 		JBrowse link
G Clu clusterin ISO protein:increased expression:neuron,astrocyte RGD PMID:10800205 RGD:408418725 NCBI chrNW_004624758:22,431,331...22,444,185
Ensembl chrNW_004624758:22,426,918...22,444,357 		JBrowse link
G Csf1 colony stimulating factor 1 ISO protein:increased expression:facial VII nerve, microglial cell RGD PMID:20831658 RGD:5131509 NCBI chrNW_004624772:5,663,374...5,705,965
Ensembl chrNW_004624772:5,663,070...5,707,753 		JBrowse link
G Ctss cathepsin S ISO RGD PMID:17539023 RGD:5686912 NCBI chrNW_004624772:18,421,905...18,446,857
Ensembl chrNW_004624772:18,419,736...18,438,786 		JBrowse link
G Gfra1 GDNF family receptor alpha 1 ISO mRNA:increased expression:facial VII nucleus RGD PMID:9582449 RGD:6218984 NCBI chrNW_004624737:30,325,962...30,526,311
Ensembl chrNW_004624737:30,324,515...30,526,486 		JBrowse link
G Hgf hepatocyte growth factor treatment ISO RGD PMID:21562589 RGD:8548634 NCBI chrNW_004624739:30,233,589...30,307,508
Ensembl chrNW_004624739:30,236,146...30,307,356 		JBrowse link
G Ndufa5 NADH:ubiquinone oxidoreductase subunit A5 ISO mRNA:increased expression:skeletal muscle RGD PMID:8875451 RGD:2302319 NCBI chrNW_004624783:12,418,825...12,435,868
Ensembl chrNW_004624783:12,418,963...12,439,440 		JBrowse link
G Ret ret proto-oncogene ISO mRNA:increased expression:facial VII nucleus RGD PMID:9582449 RGD:6218984 NCBI chrNW_004624922:382,462...413,227
Ensembl chrNW_004624922:382,399...413,281 		JBrowse link
Hypoglossal Nerve Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1b activin A receptor type 1B ISO RGD PMID:9013782 RGD:151665480 NCBI chrNW_004624816:331,695...374,187
Ensembl chrNW_004624816:331,695...374,193 		JBrowse link
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif 1 ISO mRNA:increased expression:hypoglossal nerve RGD PMID:11311987 RGD:5037239 NCBI chrNW_004624745:14,802,703...14,811,568
Ensembl chrNW_004624745:14,802,371...14,811,203 		JBrowse link
G Aif1 allograft inflammatory factor 1 ISO RGD PMID:9698327 RGD:704401 NCBI chrNW_004624754:24,590,071...24,591,913
Ensembl chrNW_004624754:24,590,071...24,591,904 		JBrowse link
G Csnk2b casein kinase 2 beta ISO RGD PMID:11068334 RGD:11565824 NCBI chrNW_004624754:24,533,134...24,538,233 JBrowse link
G Fgf2 fibroblast growth factor 2 ISO RGD PMID:9183688 RGD:8655640 NCBI chrNW_004624777:3,268,674...3,321,424
Ensembl chrNW_004624777:3,268,953...3,321,145 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 ISO RGD PMID:9183688 RGD:8655640 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870 		JBrowse link
G Gfra1 GDNF family receptor alpha 1 ISO mRNA:increased expression:hypoglossal XII nerve RGD PMID:10407179 RGD:6218979 NCBI chrNW_004624737:30,325,962...30,526,311
Ensembl chrNW_004624737:30,324,515...30,526,486 		JBrowse link
G Il1r1 interleukin 1 receptor type 1 ISO mRNA:increased expression:hypoglossal nerve RGD PMID:11311987 RGD:5037239 NCBI chrNW_004624749:6,661,142...6,737,988
Ensembl chrNW_004624749:6,708,522...6,739,871 		JBrowse link
G Mcam melanoma cell adhesion molecule ISO RGD PMID:10076889 RGD:7364787 NCBI chrNW_004624784:14,671,524...14,681,151
Ensembl chrNW_004624784:14,673,060...14,681,423 		JBrowse link
G Mme membrane metalloendopeptidase ISO RGD PMID:8201016 RGD:13801045 NCBI chrNW_004624730:32,601,835...32,691,368
Ensembl chrNW_004624730:32,601,488...32,689,080 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha ISO RGD PMID:7769990 RGD:7327191 NCBI chrNW_004624901:1,319,426...1,336,848
Ensembl chrNW_004624901:1,319,062...1,336,744 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta ISO RGD PMID:7769990 RGD:7327191 NCBI chrNW_004624742:13,243,248...13,357,873
Ensembl chrNW_004624742:13,242,593...13,357,986 		JBrowse link
G Ret ret proto-oncogene ISO mRNA:increased expression:hypoglossal XII nerve RGD PMID:10407179 RGD:6218979 NCBI chrNW_004624922:382,462...413,227
Ensembl chrNW_004624922:382,399...413,281 		JBrowse link
G Smad1 SMAD family member 1 ISO mRNA:increased expression:hypoglossal nucleus RGD PMID:17166487 RGD:1643227 NCBI chrNW_004624853:4,415,816...4,503,317
Ensembl chrNW_004624853:4,444,876...4,502,496 		JBrowse link
G Smad2 SMAD family member 2 ISO mRNA:increased expression:hypoglossal nucleus RGD PMID:17166487 RGD:1643227 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078 		JBrowse link
G Smad3 SMAD family member 3 ISO mRNA:increased expression:hypoglossal nucleus RGD PMID:17166487 RGD:1643227 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371 		JBrowse link
G Smad4 SMAD family member 4 ISO mRNA:increased expression:hypoglossal nucleus RGD PMID:17166487 RGD:1643227 NCBI chrNW_004624778:14,570,025...14,629,950
Ensembl chrNW_004624778:14,570,348...14,630,325 		JBrowse link
G Smad7 SMAD family member 7 ISO mRNA:increased expression:hypoglossal nucleus RGD PMID:17166487 RGD:1643227 NCBI chrNW_004624778:12,415,364...12,444,882
Ensembl chrNW_004624778:12,415,282...12,444,835 		JBrowse link
G Smad9 SMAD family member 9 ISO mRNA:decreased expression:hypoglossal nucleus RGD PMID:17166487 RGD:1643227 NCBI chrNW_004624776:332,591...378,199 JBrowse link
G Txnrd1 thioredoxin reductase 1 ISO mRNA, protein:increased expression:neuron RGD PMID:19833109 RGD:5133729 NCBI chrNW_004624750:4,444,318...4,536,384
Ensembl chrNW_004624750:4,443,915...4,510,380 		JBrowse link
Intracranial Subdural Hematoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gp6 glycoprotein VI platelet exacerbates ISO RGD PMID:21258336 RGD:401824683 NCBI chrNW_004624832:2,197,897...2,208,019 JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 treatment ISO protein:increased expression:brain (rat) RGD PMID:34334113 RGD:155882538 NCBI chrNW_004624732:44,097,348...44,226,701
Ensembl chrNW_004624732:44,101,613...44,139,997 		JBrowse link
Mandibular Fractures term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 ISO mRNA:decreased expression:bone RGD PMID:19607804 RGD:5147852 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536 		JBrowse link
G Ihh Indian hedgehog signaling molecule ISO RGD PMID:23992905 RGD:12911207 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769 		JBrowse link
Oculomotor Nerve Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO mRNA:increased expression:motor neuron RGD PMID:21456016 RGD:5684341 NCBI chrNW_004624809:8,274,736...8,622,287
Ensembl chrNW_004624809:8,276,951...8,616,765 		JBrowse link
Optic Nerve Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 ISO protein:decreased expression:retina RGD PMID:22649251 RGD:329347828 NCBI chrNW_004624826:5,844,868...5,897,541
Ensembl chrNW_004624826:5,845,001...5,897,497 		JBrowse link
G Adnp activity dependent neuroprotector homeobox ISO RGD PMID:18414890 RGD:2312783 NCBI chrNW_004624790:4,822,467...4,854,852
Ensembl chrNW_004624790:4,832,494...4,854,845 		JBrowse link
G Amigo3 adhesion molecule with Ig like domain 3 treatment ISO RGD PMID:23613963 RGD:14390159 NCBI chrNW_004624730:3,641,716...3,644,504
Ensembl chrNW_004624730:3,642,603...3,644,135 		JBrowse link
G Aqp4 aquaporin 4 ISO RGD PMID:20216911 RGD:2326035 NCBI chrNW_004624770:5,581,192...5,593,470
Ensembl chrNW_004624770:5,580,808...5,594,628 		JBrowse link
G Aqp9 aquaporin 9 ISO RGD PMID:20216911 RGD:2326035 NCBI chrNW_004624781:13,650,612...13,691,175
Ensembl chrNW_004624781:13,648,065...13,691,260 		JBrowse link
G Arg2 arginase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30618589 NCBI chrNW_004624734:33,321,161...33,352,306
Ensembl chrNW_004624734:33,321,295...33,352,277 		JBrowse link
G Atf2 activating transcription factor 2 ISO RGD PMID:10366744 RGD:10047417 NCBI chrNW_004624787:12,241,838...12,338,089 JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO mRNA:increased expression:optic nerve, retina RGD PMID:24357921 RGD:10054098 NCBI chrNW_004624832:5,050,222...5,068,565
Ensembl chrNW_004624832:5,050,222...5,055,506 		JBrowse link
G Bcl2 BCL2 apoptosis regulator ISO mRNA:decreased expression:optic nerve, retina RGD PMID:24357921 RGD:10054098 NCBI chrNW_004624792:8,854,345...9,032,727
Ensembl chrNW_004624792:8,859,522...9,031,344 		JBrowse link
G Bdnf brain derived neurotrophic factor treatment ISO RGD PMID:9520478 PMID:11050383 PMID:15140649 RGD:8655584 RGD:8655586 RGD:8655637 NCBI chrNW_004624766:17,281,882...17,330,601
Ensembl chrNW_004624766:17,279,630...17,330,490 		JBrowse link
G C3 complement C3 ISO mRNA:increased expression:optic nerve RGD PMID:14577867 RGD:5129542 NCBI chrNW_004624828:3,773,816...3,798,077
Ensembl chrNW_004624828:3,770,221...3,797,946 		JBrowse link
G Cdk2 cyclin dependent kinase 2 ISO mRNA:increased expression:retina RGD PMID:16723461 RGD:2293567 NCBI chrNW_004624802:12,076,443...12,082,608
Ensembl chrNW_004624802:12,076,443...12,082,630 		JBrowse link
G Cfl1 cofilin 1 treatment ISO RGD PMID:27443501 RGD:11568693 NCBI chrNW_004624767:20,574,884...20,578,413
Ensembl chrNW_004624767:20,574,966...20,579,796 		JBrowse link
G Clu clusterin ISO RGD PMID:14577867 RGD:5129542 NCBI chrNW_004624758:22,431,331...22,444,185
Ensembl chrNW_004624758:22,426,918...22,444,357 		JBrowse link
G Csf1r colony stimulating factor 1 receptor ISO mRNA:increased expression:retina (rat) RGD PMID:20187850 RGD:151665810 NCBI chrNW_004624774:9,363,156...9,391,939
Ensembl chrNW_004624774:9,363,908...9,391,986 		JBrowse link
G Csf3 colony stimulating factor 3 treatment ISO RGD PMID:20144610 RGD:11039471 NCBI chrNW_004624795:3,162,999...3,167,248
Ensembl chrNW_004624795:3,163,009...3,166,594 		JBrowse link
G Ctsb cathepsin B ISO protein:increased expression:retina (rat) RGD PMID:18775855 RGD:2315508 NCBI chrNW_004624758:25,366,120...25,384,554
Ensembl chrNW_004624758:25,366,840...25,373,954 		JBrowse link
G Edn1 endothelin 1 ISO protein:increased expression:retina RGD PMID:18600494 RGD:4892579 NCBI chrNW_004624756:13,842,482...13,849,003
Ensembl chrNW_004624756:13,842,164...13,849,029 		JBrowse link
G Ednra endothelin receptor type A ISO mRNA:increased expression:retina RGD PMID:18600494 RGD:4892579 NCBI chrNW_004624853:6,298,406...6,362,353
Ensembl chrNW_004624853:6,302,751...6,360,089 		JBrowse link
G Ednrb endothelin receptor type B ISO mRNA:increased expression:retina RGD PMID:18600494 RGD:4892579 NCBI chrNW_004624751:22,459,613...22,491,409
Ensembl chrNW_004624751:22,459,584...22,491,606 		JBrowse link
G Fgf2 fibroblast growth factor 2 treatment ISO RGD PMID:14664816 RGD:8554854 NCBI chrNW_004624777:3,268,674...3,321,424
Ensembl chrNW_004624777:3,268,953...3,321,145 		JBrowse link
G Fto FTO alpha-ketoglutarate dependent dioxygenase ISO mRNA:increased expression:retina RGD PMID:33664770 RGD:329951020 NCBI chrNW_004624757:2,675,810...3,081,751
Ensembl chrNW_004624757:2,675,671...3,080,480 		JBrowse link
G Gdnf glial cell derived neurotrophic factor ISO RGD PMID:15144875 RGD:6218970 NCBI chrNW_004624759:17,263,570...17,290,046
Ensembl chrNW_004624759:17,263,969...17,287,723 		JBrowse link
G Gfra1 GDNF family receptor alpha 1 ISO RGD PMID:15144875 RGD:6218970 NCBI chrNW_004624737:30,325,962...30,526,311
Ensembl chrNW_004624737:30,324,515...30,526,486 		JBrowse link
G Gfra2 GDNF family receptor alpha 2 ISO RGD PMID:15144875 RGD:6218970 NCBI chrNW_004624758:17,330,401...17,417,435
Ensembl chrNW_004624758:17,330,020...17,417,572 		JBrowse link
G Hgf hepatocyte growth factor treatment ISO RGD PMID:21443522 RGD:8548549 NCBI chrNW_004624739:30,233,589...30,307,508
Ensembl chrNW_004624739:30,236,146...30,307,356 		JBrowse link
G Igf1r insulin like growth factor 1 receptor ISO protein:increased expression:retina:
protein: altered activity: eye		 RGD PMID:19484445 PMID:23648097 RGD:10046025 RGD:5686431 NCBI chrNW_004624768:5,396,027...5,688,435
Ensembl chrNW_004624768:5,396,156...5,681,809 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:10366744 RGD:10047417 NCBI chrNW_004624862:1,537,886...1,540,633
Ensembl chrNW_004624862:1,538,455...1,539,426 		JBrowse link
G Kcnj10 potassium inwardly rectifying channel subfamily J member 10 ISO RGD PMID:20216911 RGD:2326035 NCBI chrNW_004624794:1,180,822...1,211,781
Ensembl chrNW_004624794:1,180,834...1,212,456 		JBrowse link
G Myrf myelin regulatory factor ISO mRNA:decreased expression: oligodendrocyte RGD PMID:29915135 RGD:213230153 NCBI chrNW_004624926:615,991...636,167
Ensembl chrNW_004624926:617,303...636,080 		JBrowse link
G Nampt nicotinamide phosphoribosyltransferase treatment ISO RGD PMID:28032230 RGD:13781885 NCBI chrNW_004624739:23,411,478...23,444,590
Ensembl chrNW_004624739:23,411,488...23,442,359 		JBrowse link
G Ncam1 neural cell adhesion molecule 1 ISO RGD PMID:18757519 RGD:2326023 NCBI chrNW_004624784:8,339,582...8,635,025
Ensembl chrNW_004624784:8,339,916...8,636,012 		JBrowse link
G Nefm neurofilament medium chain ISO RGD PMID:8501527 RGD:9743936 NCBI chrNW_004624758:20,030,450...20,036,105 JBrowse link
G Neo1 neogenin 1 ISO protein:increased expression:retina RGD PMID:21887516 RGD:9850142 NCBI chrNW_004624781:1,021,460...1,227,680
Ensembl chrNW_004624781:1,019,603...1,227,666 		JBrowse link
G Ngf nerve growth factor ISO protein:increased expression:retina RGD PMID:28067793 RGD:402463954 NCBI chrNW_004624772:11,009,765...11,070,050
Ensembl chrNW_004624772:11,010,845...11,070,017 		JBrowse link
G Ngfr nerve growth factor receptor ISO RGD PMID:20943663 RGD:5508695 NCBI chrNW_004624795:5,623,686...5,639,545
Ensembl chrNW_004624795:5,623,700...5,639,655 		JBrowse link
G Ntrk1 neurotrophic receptor tyrosine kinase 1 ISO RGD PMID:20943663 RGD:5508695 NCBI chrNW_004624885:1,989,027...2,005,474
Ensembl chrNW_004624885:1,989,138...2,005,577 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 treatment ISO RGD PMID:20357199 PMID:34245756 RGD:5684908 RGD:597015764 NCBI chrNW_004624809:8,274,736...8,622,287
Ensembl chrNW_004624809:8,276,951...8,616,765 		JBrowse link
G Pawr pro-apoptotic WT1 regulator ISO mRNA:increased expression:retina: RGD PMID:12836167 RGD:1299297 NCBI chrNW_004624750:18,562,270...18,710,397
Ensembl chrNW_004624750:18,562,221...18,705,540 		JBrowse link
G Pax6 paired box 6 ISO protein:increased expression:retina (rat) RGD PMID:23297010 RGD:8552379 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO protein:decreased expression:nerve fiber: RGD PMID:9893812 RGD:10449496 NCBI chrNW_004624752:9,072,471...9,088,289
Ensembl chrNW_004624752:9,072,512...9,088,593 		JBrowse link
G Pecam1 platelet and endothelial cell adhesion molecule 1 ISO protein:increased expression:optic nerve (rat) RGD PMID:22336118 RGD:6767293 NCBI chrNW_004624870:33,293...122,536 JBrowse link
G Plau plasminogen activator, urokinase ISO mRNA:increased expression:optic nerve (rat) RGD PMID:20798533 RGD:6483802 NCBI chrNW_004624754:7,405,637...7,415,870
Ensembl chrNW_004624754:7,408,983...7,416,559 		JBrowse link
G Ptpn5 protein tyrosine phosphatase non-receptor type 5 ISO protein:increased expression:retina (rat) RGD PMID:15555919 RGD:9835027 NCBI chrNW_004624766:10,147,859...10,204,657
Ensembl chrNW_004624766:10,147,840...10,204,238 		JBrowse link
G Rhoa ras homolog family member A ISO protein:increased expression, altered localization:retina RGD PMID:17534117 RGD:1642826 NCBI chrNW_004624730:3,316,122...3,361,820 JBrowse link
G Snw1 SNW domain containing 1 ISO protein:increased expression:retina (rat) RGD PMID:25074585 RGD:11035254 NCBI chrNW_004624734:24,161,974...24,191,943
Ensembl chrNW_004624734:24,161,662...24,191,937 		JBrowse link
G Tlr2 toll like receptor 2 treatment ISO RGD PMID:19661221 RGD:597538516 NCBI chrNW_004624858:4,931,820...4,984,175
Ensembl chrNW_004624858:4,979,485...4,981,833 		JBrowse link
G Tlr4 toll like receptor 4 ISO protein:increased expression:optic nerve RGD PMID:23103505 RGD:7794777 NCBI chrNW_004624760:17,596,516...17,608,955
Ensembl chrNW_004624760:17,598,630...17,609,120 		JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A ISO RGD PMID:14697498 PMID:18552980 RGD:7794683 RGD:8661743 NCBI chrNW_004624860:3,111,244...3,123,041
Ensembl chrNW_004624860:3,111,630...3,122,711 		JBrowse link
G Tradd TNFRSF1A associated via death domain ISO protein:increased expression: retina RGD PMID:18552980 RGD:7794683 NCBI chrNW_004624746:19,155,058...19,165,702
Ensembl chrNW_004624746:19,155,113...19,165,705 		JBrowse link
Penetrating Eye Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 ISO mRNA:increased expression:retina RGD PMID:9268592 RGD:8655567 NCBI chrNW_004624777:3,268,674...3,321,424
Ensembl chrNW_004624777:3,268,953...3,321,145 		JBrowse link
G Neo1 neogenin 1 ISO protein:increased expression:retina RGD PMID:21887516 RGD:9850142 NCBI chrNW_004624781:1,021,460...1,227,680
Ensembl chrNW_004624781:1,019,603...1,227,666 		JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a ISO protein:increased expression:retina RGD PMID:21887516 RGD:9850142 NCBI chrNW_004624768:10,739,674...10,778,036
Ensembl chrNW_004624768:10,751,991...10,778,050 		JBrowse link
Penetrating Head Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 ISO protein:increased expression,increased activity:cerebral cortex: RGD PMID:16672190 RGD:9685448 NCBI chrNW_004624737:7,011,792...7,193,903
Ensembl chrNW_004624737:7,084,818...7,191,918 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 ISO mRNA,protein:increased expression:astrocyte,macrophage,neutrophil: RGD PMID:11168551 RGD:10402049 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870 		JBrowse link
G Gfap glial fibrillary acidic protein ISO RGD PMID:10225952 RGD:6480471 NCBI chrNW_004624795:395,298...400,781
Ensembl chrNW_004624795:394,436...401,231 		JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO protein:increased expression:neuron: RGD PMID:7526956 RGD:10449485 NCBI chrNW_004624752:9,072,471...9,088,289
Ensembl chrNW_004624752:9,072,512...9,088,593 		JBrowse link
G Vim vimentin ISO RGD PMID:10225952 RGD:6480471 NCBI chrNW_004624796:10,624,672...10,632,300
Ensembl chrNW_004624796:10,623,929...10,632,600 		JBrowse link
Post-Head Injury Coma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trh thyrotropin releasing hormone ISO CTD Direct Evidence: therapeutic CTD PMID:8690305 NCBI chrNW_004624872:866,370...868,624
Ensembl chrNW_004624872:866,365...868,739 		JBrowse link
Skull Fractures term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 treatment ISO RGD PMID:16332232 RGD:8699514 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Igf1 insulin like growth factor 1 ISO protein:decreased expression:serum: RGD PMID:12002507 RGD:8548865 NCBI chrNW_004624750:5,881,065...5,954,799
Ensembl chrNW_004624750:5,881,091...5,952,300 		JBrowse link
Subdural Hematoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plat plasminogen activator, tissue type ISO CTD Direct Evidence: marker/mechanism CTD PMID:1899364 NCBI chrNW_004624780:1,014,429...1,063,636
Ensembl chrNW_004624780:1,028,085...1,063,649 		JBrowse link
traumatic brain injury term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam10 ADAM metallopeptidase domain 10 ISO RGD PMID:22489706 RGD:13703033 NCBI chrNW_004624781:13,195,390...13,321,823
Ensembl chrNW_004624781:13,195,755...13,321,823 		JBrowse link
G Ahr aryl hydrocarbon receptor ISO protein:increased expression:T cell, neuron, brain cortex, hippocampus RGD PMID:27506546 RGD:405878081 NCBI chrNW_004624739:12,939,183...12,987,574
Ensembl chrNW_004624739:12,942,165...12,987,973 		JBrowse link
G App amyloid beta precursor protein treatment ISO RGD PMID:29320530 RGD:13782048 NCBI chrNW_004624745:13,904,912...14,159,374
Ensembl chrNW_004624745:13,902,577...14,159,372 		JBrowse link
G Bad BCL2 associated agonist of cell death treatment ISO RGD PMID:24582457 RGD:13782254 NCBI chrNW_004624767:22,025,721...22,037,283
Ensembl chrNW_004624767:22,026,133...22,037,277 		JBrowse link
G Bdnf brain derived neurotrophic factor ISO mRNA:increased expression:CA3 field of hippocampus, dentate gyrus RGD PMID:10925157 RGD:596936229 NCBI chrNW_004624766:17,281,882...17,330,601
Ensembl chrNW_004624766:17,279,630...17,330,490 		JBrowse link
G Bid BH3 interacting domain death agonist severity
disease_progression		 ISO RGD PMID:12172380 PMID:15307896 RGD:5509821 RGD:632018 NCBI chrNW_004624735:9,557,732...9,590,862
Ensembl chrNW_004624735:9,579,979...9,589,260 		JBrowse link
G Capn1 calpain 1 severity ISO protein:increased expression:cytosol, plasma membrane RGD PMID:9469158 PMID:15307896 RGD:13792664 RGD:5509821 NCBI chrNW_004624767:21,146,310...21,169,593
Ensembl chrNW_004624767:21,146,999...21,169,957 		JBrowse link
G Casp8 caspase 8 disease_progression
severity		 ISO RGD PMID:12172380 PMID:15307896 RGD:5509821 RGD:632018 NCBI chrNW_004624899:427,064...450,931
Ensembl chrNW_004624899:424,363...451,087 		JBrowse link
G Casp9 caspase 9 disease_progression
severity		 ISO RGD PMID:12172380 PMID:15307896 RGD:5509821 RGD:632018 NCBI chrNW_004624764:1,769,270...1,789,399
Ensembl chrNW_004624764:1,773,455...1,789,423 		JBrowse link
G Ccng1 cyclin G1 treatment ISO RGD PMID:18612315 PMID:24398934 RGD:151356934 RGD:151356935 NCBI chrNW_004624733:26,366,448...26,378,062
Ensembl chrNW_004624733:26,367,200...26,376,664 		JBrowse link
G Cd163 CD163 molecule ISO protein:increased expression:brain, macrophage (rat) RGD PMID:22583855 RGD:127285798 NCBI chrNW_004624860:3,976,746...4,000,349
Ensembl chrNW_004624860:3,975,747...4,000,349 		JBrowse link
G Cd8a CD8 subunit alpha ISO mRNA:increased expression:brain (mouse) RGD PMID:31383034 RGD:124715446 NCBI chrNW_004624749:16,564,944...16,569,890 JBrowse link
G Cit citron rho-interacting serine/threonine kinase ISO mRNA:decreased expression:cerebral cortex��(rat) RGD PMID:12503083 RGD:2317873 NCBI chrNW_004624747:13,749,126...13,918,222
Ensembl chrNW_004624747:13,750,283...13,915,715 		JBrowse link
G Ctnnb1 catenin beta 1 treatment ISO RGD PMID:26296359 RGD:597538582 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 treatment ISO RGD PMID:26435412 RGD:27095897 NCBI chrNW_004624757:14,989,241...14,991,650
Ensembl chrNW_004624757:14,989,084...14,991,910 		JBrowse link
G Cxcl12 C-X-C motif chemokine ligand 12 ISO protein:increased expression:cerebral cortex RGD PMID:27614125 RGD:329961568 NCBI chrNW_004624922:1,261,228...1,273,755
Ensembl chrNW_004624922:1,261,228...1,273,758 		JBrowse link
G Drd1 dopamine receptor D1 treatment ISO RGD PMID:24047867 RGD:13506948 NCBI chrNW_004624733:14,517,540...14,522,173
Ensembl chrNW_004624733:14,518,146...14,520,905 		JBrowse link
G Drd2 dopamine receptor D2 treatment ISO RGD PMID:24047867 RGD:13506948 NCBI chrNW_004624784:8,828,589...8,906,617
Ensembl chrNW_004624784:8,827,006...8,865,529 		JBrowse link
G Fto FTO alpha-ketoglutarate dependent dioxygenase ISO mRNA:decreased expression:cerebral cortex RGD PMID:31992337 RGD:329901857 NCBI chrNW_004624757:2,675,810...3,081,751
Ensembl chrNW_004624757:2,675,671...3,080,480 		JBrowse link
G Fubp1 far upstream element binding protein 1 ISO RGD PMID:23797733 RGD:13673879 NCBI chrNW_004624742:19,279,544...19,313,139 JBrowse link
G Gnal G protein subunit alpha L ISO RGD PMID:29215295 RGD:13513923 NCBI chrNW_004624770:19,433,614...19,504,759
Ensembl chrNW_004624770:19,433,660...19,504,698 		JBrowse link
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 ISO protein:increased phosphorylation:central amygdaloid nucleus (rat) RGD PMID:30638118 RGD:405101698 NCBI chrNW_004624733:35,337,039...35,648,184
Ensembl chrNW_004624733:35,339,683...35,647,349 		JBrowse link
G Icam1 intercellular adhesion molecule 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28642177 NCBI chrNW_004624828:2,432,584...2,451,997
Ensembl chrNW_004624828:2,432,550...2,453,071 		JBrowse link
G Il1b interleukin 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:28642177 NCBI chrNW_004624749:12,852,128...12,858,478
Ensembl chrNW_004624749:12,852,021...12,858,760 		JBrowse link
G Itgb1 integrin subunit beta 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25668593 NCBI chrNW_004624805:8,748,848...8,800,259
Ensembl chrNW_004624805:8,765,949...8,802,149 		JBrowse link
G Lama1 laminin subunit alpha 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25668593 NCBI chrNW_004624770:16,358,952...16,490,986
Ensembl chrNW_004624770:16,359,255...16,462,817 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 ISO protein:increased expression:hippocampus: RGD PMID:28365875 RGD:13703062 NCBI chrNW_004624931:297,864...343,314
Ensembl chrNW_004624931:298,328...343,915 		JBrowse link
G Mapt microtubule associated protein tau treatment ISO RGD PMID:25771151 PMID:26484783 PMID:26729399 PMID:28412141 RGD:13800902 RGD:13800909 RGD:13800912 RGD:13800917 NCBI chrNW_004624849:2,320,887...2,421,099 JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit ISO mRNA:decreased expression:cerebral cortex RGD PMID:31992337 RGD:329901857 NCBI chrNW_004624867:5,508,847...5,533,395
Ensembl chrNW_004624867:5,508,886...5,533,395 		JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO protein:increased expression:cerebral cortex RGD PMID:27614125 RGD:329961568 NCBI chrNW_004624757:1,450,680...1,479,160
Ensembl chrNW_004624757:1,448,698...1,479,255 		JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25668593 NCBI chrNW_004624790:8,584,399...8,591,763
Ensembl chrNW_004624790:8,583,457...8,591,713 		JBrowse link
G Mpo myeloperoxidase ISO CTD Direct Evidence: marker/mechanism CTD PMID:25668593 NCBI chrNW_004624871:121,026...131,433
Ensembl chrNW_004624871:121,026...131,323 		JBrowse link
G Ncstn nicastrin ISO RGD PMID:18240300 RGD:13801189 NCBI chrNW_004624794:908,227...923,474
Ensembl chrNW_004624794:905,857...924,003 		JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 ISO protein:increased expression:brain: RGD PMID:30855558 RGD:26884463 NCBI chrNW_004624787:14,355,330...14,381,353
Ensembl chrNW_004624787:14,355,791...14,381,251 		JBrowse link
G Ngf nerve growth factor treatment ISO RGD PMID:26285082 RGD:402463964 NCBI chrNW_004624772:11,009,765...11,070,050
Ensembl chrNW_004624772:11,010,845...11,070,017 		JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 ISO CTD Direct Evidence: therapeutic CTD PMID:27822499 NCBI chrNW_004624818:2,575,476...2,591,423
Ensembl chrNW_004624818:2,573,498...2,580,095 		JBrowse link
G Nos2 nitric oxide synthase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28642177 NCBI chrNW_004624786:491,944...530,427
Ensembl chrNW_004624786:489,311...528,271 		JBrowse link
G Nox1 NADPH oxidase 1 ISO protein:increased expression:cerebral cortex RGD PMID:27614125 RGD:329961568 NCBI chrNW_004624902:1,741,921...1,754,932
Ensembl chrNW_004624902:1,736,704...1,755,504 		JBrowse link
G Nr3c1 nuclear receptor subfamily 3 group C member 1 ISO protein:increased phosphorylation:amygdala
mRNA:decreased expression:hippocampus, hypothalamus		 RGD PMID:30638118 PMID:36637480 RGD:405101698 RGD:408364984 NCBI chrNW_004624774:2,496,276...2,603,894
Ensembl chrNW_004624774:2,495,304...2,602,632 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO mRNA:increased expression:dentate gyrus RGD PMID:10925157 RGD:596936229 NCBI chrNW_004624809:8,274,736...8,622,287
Ensembl chrNW_004624809:8,276,951...8,616,765 		JBrowse link
G Ocln occludin ISO CTD Direct Evidence: marker/mechanism CTD PMID:25668593 NCBI chrNW_004624905:333,853...388,990
Ensembl chrNW_004624905:333,864...388,880 		JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15829224 PMID:28642177 NCBI chrNW_004624807:446,662...478,571
Ensembl chrNW_004624807:446,647...479,069 		JBrowse link
G Pde10a phosphodiesterase 10A ISO RGD PMID:29215295 RGD:13513923 NCBI chrNW_004624785:13,208,518...13,885,261
Ensembl chrNW_004624785:13,497,495...13,880,345 		JBrowse link
G Pdyn prodynorphin ISO mRNA:increased expression:hippocampus RGD PMID:12626770 RGD:633616 NCBI chrNW_004624741:3,239,101...3,253,507
Ensembl chrNW_004624741:3,237,942...3,253,503 		JBrowse link
G Phactr1 phosphatase and actin regulator 1 treatment ISO RGD PMID:36571365 RGD:401901253 NCBI chrNW_004624756:12,935,048...13,449,312
Ensembl chrNW_004624756:12,934,212...13,447,326 		JBrowse link
G Ppp3r1 protein phosphatase 3 regulatory subunit B, alpha ISO RGD PMID:20713027 RGD:13830881 NCBI chrNW_004624762:5,087,726...5,156,526
Ensembl chrNW_004624762:5,087,705...5,156,922 		JBrowse link
G Ppp3r2 protein phosphatase 3 regulatory subunit B, beta ISO RGD PMID:20713027 RGD:13830881 NCBI chrNW_004624758:9,737,002...9,737,978
Ensembl chrNW_004624758:9,736,936...9,739,266 		JBrowse link
G Psen1 presenilin 1 ISO RGD PMID:18240300 RGD:13801189 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28642177 NCBI chrNW_004624814:6,897,818...6,904,890
Ensembl chrNW_004624814:6,897,857...6,903,728 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:25668593 PMID:28642177 NCBI chrNW_004624767:20,732,813...20,742,016
Ensembl chrNW_004624767:20,732,938...20,741,272 		JBrowse link
G Sox2 SRY-box transcription factor 2 treatment ISO RGD PMID:26296359 RGD:597538582 NCBI chrNW_004624730:59,570,879...59,573,001
Ensembl chrNW_004624730:59,570,915...59,571,871 		JBrowse link
G Tgfb1 transforming growth factor beta 1 treatment ISO RGD PMID:28433746 RGD:14995478 NCBI chrNW_004624907:162,567...175,696
Ensembl chrNW_004624907:161,569...176,605 		JBrowse link
G Tnf tumor necrosis factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:28642177 NCBI chrNW_004624754:24,623,059...24,625,647
Ensembl chrNW_004624754:24,623,425...24,625,531 		JBrowse link
G Tp53 tumor protein p53 treatment ISO RGD PMID:27553877 RGD:14995939 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218 		JBrowse link
G Ube4b ubiquitination factor E4B ISO CTD Direct Evidence: therapeutic CTD PMID:27822499 NCBI chrNW_004624818:2,448,809...2,561,947
Ensembl chrNW_004624818:2,447,368...2,562,128 		JBrowse link
G Wnt3a Wnt family member 3A treatment ISO RGD PMID:26296359 RGD:597538582 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
Traumatic Intracranial Hemorrhage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G F7 coagulation factor VII ISO CTD Direct Evidence: therapeutic CTD PMID:20370756 NCBI chrNW_004624793:780,057...788,105
Ensembl chrNW_004624793:780,059...788,095 		JBrowse link
Traumatic Subarachnoid Hemorrhage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc8 ATP binding cassette subfamily C member 8 treatment ISO RGD PMID:18854840 RGD:2325137 NCBI chrNW_004624766:9,018,616...9,092,365
Ensembl chrNW_004624766:9,018,721...9,092,287 		JBrowse link
Trigeminal Nerve Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tp53 tumor protein p53 ISO RGD PMID:22977862 RGD:8547771 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218 		JBrowse link
Vestibulocochlear Nerve Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 ISO mRNA:increased expression:Vestibulocochlear nerve: RGD PMID:22178544 RGD:8548530 NCBI chrNW_004624774:8,211,723...8,215,962
Ensembl chrNW_004624774:8,211,984...8,213,240 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 14230
    Wounds and Injuries 893
      Nervous System Trauma 554
        Craniocerebral Trauma 332
          Brain Injuries + 266
          Cerebrospinal Fluid Leak + 0
          Closed Head Injuries + 10
          Cranial Nerve Injuries + 77
          Facial Injuries + 10
          Penetrating Head Injuries 5
          Post-Head Injury Coma 1
          Skull Fractures + 4
          Traumatic Intracranial Hemorrhage + 6
Path 2
Term Annotations click to browse term
  disease 14230
    disease of anatomical entity 13932
      nervous system disease 12270
        Nervous System Trauma 554
          Craniocerebral Trauma 332
            Brain Injuries + 266
            Cerebrospinal Fluid Leak + 0
            Closed Head Injuries + 10
            Cranial Nerve Injuries + 77
            Facial Injuries + 10
            Penetrating Head Injuries 5
            Post-Head Injury Coma 1
            Skull Fractures + 4
            Traumatic Intracranial Hemorrhage + 6
paths to the root