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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Intestinal Neoplasms
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Accession:DOID:9002245 term browser browse the term
Definition:Tumors or cancer of the INTESTINES.
Synonyms:exact_synonym: Cancer of Intestines;   Cancer of the Intestines;   Intestinal Neoplasm;   Intestines Neoplasm;   Intestines Neoplasms
 primary_id: MESH:D007414



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Intestinal Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO
IMP
CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:9111214 PMID:14706516 PMID:16962818 PMID:19092804 PMID:26335331 More... RGD:6484212, RGD:1601201, RGD:7242058 NCBI chr18:26,138,382...26,196,021 JBrowse link
G ApcPirc APC, WNT signaling pathway regulator; polyposis in the rat colon IMP RGD PMID:17360473 RGD:1601201
G Bax BCL2 associated X, apoptosis regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:12663524 NCBI chr 1:105,076,472...105,081,906 JBrowse link
G Bcl2 BCL2, apoptosis regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:10223192 NCBI chr13:23,204,464...23,366,900 JBrowse link
G Cdh2 cadherin 2 ISO RGD PMID:7502046 RGD:734737 NCBI chr18:8,051,097...8,265,288 JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD
RGD
PMID:11535846 PMID:12468628 PMID:11212250 RGD:8662377 NCBI chr20:7,150,820...7,161,373 JBrowse link
G Cdkn1b cyclin-dependent kinase inhibitor 1B ISO CTD Direct Evidence: marker/mechanism CTD PMID:24185511 NCBI chr 4:169,491,273...169,496,500 JBrowse link
G Ctnnb1 catenin beta 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:10223192 NCBI chr 8:129,517,576...129,544,661 JBrowse link
G Fen1 flap structure-specific endonuclease 1 disease_progression ISO DNA:haploinsufficiency: : RGD PMID:12119409 RGD:737746 NCBI chr 1:216,270,016...216,274,873 JBrowse link
G Gsk3b glycogen synthase kinase 3 beta treatment ISO RGD PMID:24670930 RGD:13210772 NCBI chr11:76,004,502...76,154,665 JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23975432 NCBI chr 1:207,721,134...208,054,073 JBrowse link
G Map3k8 mitogen-activated protein kinase kinase kinase 8 ISO RGD PMID:23064365 RGD:151356997 NCBI chr17:58,078,175...58,098,455 JBrowse link
G Mapk8 mitogen-activated protein kinase 8 treatment ISO RGD PMID:23327547 PMID:17591974 RGD:13217409, RGD:13217412 NCBI chr16:8,645,171...8,728,225 JBrowse link
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase severity ISO RGD PMID:12130785 RGD:9588981 NCBI chr 4:150,565,646...150,577,433 JBrowse link
G Mcl1 MCL1 apoptosis regulator, BCL2 family member ISO RGD PMID:32179094 RGD:151356755 NCBI chr 2:185,884,840...185,912,532 JBrowse link
G Muc2 mucin 2, oligomeric mucus/gel-forming ISO CTD Direct Evidence: marker/mechanism CTD PMID:12468628 NCBI chr 1:206,225,775...206,261,280 JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23178280 NCBI chr 7:25,733,471...25,829,440 JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 ISO mRNA:decreased expression:intestine: RGD PMID:19737405 RGD:11556207 NCBI chr 1:214,837,847...215,267,626 JBrowse link
G Pla2g2a phospholipase A2 group IIA ISO RGD PMID:19037975 RGD:6482727 NCBI chr 5:156,359,725...156,362,302 JBrowse link
G Prkca protein kinase C, alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:11983831 NCBI chr10:93,388,991...93,787,617 JBrowse link
G Prkcd protein kinase C, delta ISO CTD Direct Evidence: marker/mechanism CTD PMID:11983831 NCBI chr16:5,775,681...5,806,122 JBrowse link
G Runx1 RUNX family transcription factor 1 ISO RGD PMID:22171576 RGD:126775145 NCBI chr11:45,325,778...45,560,300 JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16962818 NCBI chr 5:60,431,673...60,475,726 JBrowse link
anus benign neoplasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifnb1 interferon beta 1 ISO CTD Direct Evidence: therapeutic CTD PMID:12170190 PMID:12397731 NCBI chr 5:108,066,650...108,067,487 JBrowse link
appendiceal neoplasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Daxx death-domain associated protein ISO DNA:CNV: (human) RGD PMID:30962504 RGD:152025217 NCBI chr20:4,971,973...4,978,062 JBrowse link
G Nap1l1 nucleosome assembly protein 1-like 1 severity ISO mRNA:increased expression:appendix, mucosa (human) RGD PMID:16794389 RGD:9590083 NCBI chr 7:48,819,464...48,844,108 JBrowse link
ascending colon cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Malignant tumor of ascending colon ClinVar PMID:25741868 PMID:28492532 PMID:30093976 NCBI chr18:26,138,382...26,196,021 JBrowse link
G Msh2 mutS homolog 2 ISO ClinVar Annotator: match by term: Malignant tumor of ascending colon ClinVar PMID:9311737 PMID:9718327 PMID:11208710 PMID:11524701 PMID:11601928 More... NCBI chr 6:12,567,368...12,626,534 JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit susceptibility
onset
ISO DNA:missense mutation:CDS, exon 9:p.P286R (human)
DNA:mutations:multiple (human, non-Asian)
DNA:mutations:multiple (human)
RGD PMID:27612425 PMID:33125191 PMID:28404093 RGD:151347640, RGD:151347651, RGD:151347649 NCBI chr12:52,005,155...52,053,761 JBrowse link
G Rnf43 ring finger protein 43 exacerbates ISO DNA:nonsense mutation, frameshift mutations:CDS:multiple (human) RGD PMID:32236609 RGD:151361217 NCBI chr10:72,958,744...73,034,540 JBrowse link
Attenuated Adenomatous Polyposis Coli term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Brain tumor-polyposis syndrome 2 ClinVar PMID:1316610 PMID:1324223 PMID:7661930 PMID:8990002 PMID:9950360 More... NCBI chr18:26,138,382...26,196,021 JBrowse link
G Galnt12 polypeptide N-acetylgalactosaminyltransferase 12 ISO ClinVar Annotator: match by term: Adenomatous polyposis coli, attenuated ClinVar PMID:19617566 PMID:20551049 PMID:22461326 PMID:24038392 PMID:24357849 More... NCBI chr 5:61,384,575...61,413,346 JBrowse link
Attenuated Familial Adenomatous Polyposis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Attenuated familial adenomatous polyposis ClinVar PMID:9585611 PMID:11257105 PMID:12034871 PMID:16461775 PMID:17963004 More... NCBI chr18:26,138,382...26,196,021 JBrowse link
Cecal Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnd1 cyclin D1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14688030 NCBI chr 1:209,518,288...209,527,986 JBrowse link
G Ctnnb1 catenin beta 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14688030 NCBI chr 8:129,517,576...129,544,661 JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO CTD Direct Evidence: marker/mechanism CTD PMID:14688030 NCBI chr 4:179,916,255...179,949,613 JBrowse link
G Krt20 keratin 20 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14688030 NCBI chr10:84,880,952...84,890,285 JBrowse link
G Tp53 tumor protein p53 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14688030 NCBI chr10:54,798,871...54,810,300 JBrowse link
Colitis-Associated Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Birc3 baculoviral IAP repeat-containing 3 ameliorates
disease_progression
ISO mRNA:increased expression:colonic mucosa (human) RGD PMID:26037070 PMID:23388545 RGD:11537970, RGD:153323294 NCBI chr 8:13,285,702...13,313,329 JBrowse link
G Cyp24a1 cytochrome P450, family 24, subfamily a, polypeptide 1 treatment ISO RGD PMID:31877961 RGD:151665341 NCBI chr 3:179,694,647...179,709,083 JBrowse link
G Mapk14 mitogen activated protein kinase 14 ameliorates
exacerbates
ISO RGD PMID:30541887 PMID:24684847 PMID:29907597 RGD:151665503, RGD:151665506, RGD:151665504 NCBI chr20:6,751,288...6,812,294 JBrowse link
G Mir31 microRNA 31 exacerbates ISO RGD PMID:28600172 RGD:152998983 NCBI chr 5:103,599,038...103,599,143 JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor ameliorates
exacerbates
ISO RGD PMID:26712311 PMID:21519141 PMID:29960049 PMID:30650348 RGD:150520168, RGD:150530283, RGD:150530281, RGD:150521528 NCBI chr 8:127,952,161...127,956,230 JBrowse link
colon adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abhd5 abhydrolase domain containing 5, lysophosphatidic acid acyltransferase disease_progression ISO human cells in mouse model
mRNA:decreased expression:colon (human)
RGD PMID:30842415 PMID:30842415 RGD:153002829, RGD:153002829 NCBI chr 8:122,000,241...122,026,447 JBrowse link
G Anxa7 annexin A7 ISO protein:decreased expression:colon RGD PMID:17708571 RGD:2292654 NCBI chr15:3,821,798...3,849,659 JBrowse link
G Apc APC regulator of WNT signaling pathway IMP
ISO
associated with Adenomatous Polyposis Coli;DNA:point mutation:CDS:p.K1137X (3409A>T) (rat)
ClinVar Annotator: match by term: Colon adenocarcinoma
ClinVar
RGD
PMID:24033266 PMID:24728327 PMID:25741868 PMID:27978560 PMID:28492532 More... RGD:1601201 NCBI chr18:26,138,382...26,196,021 JBrowse link
G ApcPirc APC, WNT signaling pathway regulator; polyposis in the rat colon IMP associated with Adenomatous Polyposis Coli RGD PMID:17360473 RGD:1601201
G Arid1a AT-rich interaction domain 1A disease_progression ISO protein:decreased expression:colorectum (human) RGD PMID:26980037 RGD:126790569 NCBI chr 5:151,192,014...151,269,291 JBrowse link
G Bax BCL2 associated X, apoptosis regulator susceptibility ISO DNA:frameshift mutation: ; RGD PMID:9020077 RGD:734633 NCBI chr 1:105,076,472...105,081,906 JBrowse link
G Bcl2 BCL2, apoptosis regulator treatment ISO human cells in mouse model RGD PMID:32504672 RGD:125097526 NCBI chr13:23,204,464...23,366,900 JBrowse link
G Btk Bruton tyrosine kinase ISO mRNA:decreased expression:colon (human) RGD PMID:31402962 RGD:151347853 NCBI chr  X:102,016,070...102,055,448 JBrowse link
G Cacna1d calcium voltage-gated channel subunit alpha1 D disease_progression ISO protein:increased expression:colon (human) RGD PMID:29079724 RGD:152177516 NCBI chr16:5,227,157...5,521,163 JBrowse link
G Calr calreticulin ISO RGD PMID:18812201 RGD:150521683 NCBI chr19:40,213,367...40,218,262 JBrowse link
G Car12 carbonic anhydrase 12 disease_progression ISO RGD PMID:35847888 RGD:153352327 NCBI chr 8:67,274,739...67,330,428 JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 ameliorates ISO human cells in a mouse model RGD PMID:28486105 RGD:153323299 NCBI chr 4:159,584,623...159,617,867 JBrowse link
G Csf1r colony stimulating factor 1 receptor ameliorates ISO mouse cell line in a mouse model
human cells in a mouse model
RGD PMID:29436396 PMID:24898549 PMID:32304779 RGD:150524289, RGD:150524303, RGD:150524290 NCBI chr18:56,834,152...56,860,804 JBrowse link
G Csf2 colony stimulating factor 2 treatment ISO RGD PMID:10830715 RGD:10450245 NCBI chr10:38,887,692...38,889,673 JBrowse link
G Ctnnb1 catenin beta 1 IAGP DNA:mutation RGD PMID:16886601 RGD:1599637 NCBI chr 8:129,517,576...129,544,661 JBrowse link
G Cyp24a1 cytochrome P450, family 24, subfamily a, polypeptide 1 ISO mRNA:increased expression:colonic mucosa (human) RGD PMID:27793774 RGD:151665173 NCBI chr 3:179,694,647...179,709,083 JBrowse link
G Daxx death-domain associated protein ISO protein:decreased expression:colon: RGD PMID:16569639 RGD:9587838 NCBI chr20:4,971,973...4,978,062 JBrowse link
G Eef2 eukaryotic translation elongation factor 2 ISO protein:increased expression:colon(human) RGD PMID:19360331 RGD:153298969 NCBI chr 7:9,183,836...9,196,255 JBrowse link
G Fech ferrochelatase ISO mRNA:decreased expression:colon RGD PMID:28075030 RGD:14700888 NCBI chr18:57,945,123...57,978,327 JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit ISO protein:increased expression:colon (human) RGD PMID:22419013 RGD:153344572 NCBI chr 1:212,183,885...212,192,391 JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit ISO protein:increased expression:colon (human) RGD PMID:22419013 RGD:153344572 NCBI chr 6:30,017,952...30,039,269 JBrowse link
G Foxa1 forkhead box A1 ISO mRNA:decreased expression:colon RGD PMID:32839292 RGD:151665753 NCBI chr 6:75,099,907...75,136,534 JBrowse link
G Gata1 GATA binding protein 1 ISO RGD PMID:31069596 RGD:149735196 NCBI chr  X:14,529,706...14,537,530 JBrowse link
G Hmgb1 high mobility group box 1 IEP RGD PMID:20616616 RGD:10402080 NCBI chr12:11,009,236...11,015,941 JBrowse link
G Il21 interleukin 21 treatment ISO RGD PMID:17695518 RGD:127285540 NCBI chr 2:120,117,105...120,127,012 JBrowse link
G Jak2 Janus kinase 2 treatment
ameliorates
ISO Human cell in mouse model
human cells in mouse model
RGD PMID:32504672 PMID:22050790 RGD:125097526, RGD:127285665 NCBI chr 1:236,408,905...236,468,769 JBrowse link
G Kdm6a lysine demethylase 6A ISO DNA:hypermethylation RGD PMID:33174323 RGD:150429730 NCBI chr  X:6,920,374...7,060,027 JBrowse link
G Lox lysyl oxidase ameliorates ISO RGD PMID:21282564 RGD:150520218 NCBI chr18:45,964,544...45,977,431 JBrowse link
G Map2k7 mitogen activated protein kinase kinase 7 ISO human cell line and gene in a mouse model RGD PMID:18436711 RGD:155630593 NCBI chr12:7,389,032...7,398,377 JBrowse link
G Mapk1 mitogen activated protein kinase 1 ISO RGD PMID:24691442 RGD:13210775 NCBI chr11:97,462,025...97,529,193 JBrowse link
G Mapk3 mitogen activated protein kinase 3 ISO RGD PMID:24691442 RGD:13210775 NCBI chr 1:190,797,189...190,803,411 JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase IEP mRNA:decreased expression:colon (rat) RGD PMID:16886601 RGD:1599637 NCBI chr 1:201,140,832...201,367,481 JBrowse link
G Mir155 microRNA 155 treatment ISO RGD PMID:29535520 RGD:21409754 NCBI chr11:37,261,114...37,261,178 JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO protein:increased expression:colon (human) RGD PMID:22419013 RGD:153344572 NCBI chr19:30,327,643...30,355,856 JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO protein:increased expression:colon (human) RGD PMID:22419013 RGD:153344572 NCBI chr 3:174,103,474...174,111,434 JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Colon adenocarcinoma ClinVar PMID:25741868 NCBI chr 6:12,316,190...12,333,505 JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor exacerbates ISO human cell line in a mouse model RGD PMID:18538140 RGD:150521533 NCBI chr 8:127,952,161...127,956,230 JBrowse link
G Naip6 NLR family, apoptosis inhibitory protein 6 exacerbates ISO mRNA:increased expression:colon (human) RGD PMID:31964418 RGD:153344516 NCBI chr 2:31,507,423...31,559,098 JBrowse link
G Nos2 nitric oxide synthase 2 ISO protein:increased expression:colon (human) RGD PMID:22419013 RGD:153344572 NCBI chr10:64,313,335...64,349,221 JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 ISO mRNA:decreased expression:colon: RGD PMID:19737405 RGD:11556207 NCBI chr 1:214,837,847...215,267,626 JBrowse link
G Pfas phosphoribosylformylglycinamidine synthase ISO RGD PMID:6722784 RGD:5135276 NCBI chr10:54,189,157...54,210,685 JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha ISO DNA:mutation RGD PMID:17575153 RGD:5685670 NCBI chr 2:117,103,643...117,177,411 JBrowse link
G Pik3r3 phosphoinositide-3-kinase regulatory subunit 3 treatment ISO RGD PMID:24632606 RGD:13432053 NCBI chr 5:134,936,790...135,009,303 JBrowse link
G Rac1 Rac family small GTPase 1 treatment ISO mRNA:alternative form RGD PMID:10597294 PMID:19561401 RGD:13432049, RGD:13432051 NCBI chr12:16,150,411...16,170,864 JBrowse link
G Rad54l RAD54 like ISO ClinVar Annotator: match by term: Colon adenocarcinoma ClinVar PMID:10362365 NCBI chr 5:134,812,158...134,841,821 JBrowse link
G Rnasel ribonuclease L severity ISO RGD PMID:23567782 RGD:40902808 NCBI chr13:68,446,641...68,460,804 JBrowse link
G Rnaset2 ribonuclease T2 ISO human cells in mouse model RGD PMID:30842415 RGD:153002829 NCBI chr 1:52,576,344...52,603,151 JBrowse link
G Slc22a18 solute carrier family 22, member 18 ameliorates ISO mRNA:decreased expression:colorectum (human) RGD PMID:26196590 RGD:11522474 NCBI chr 1:198,670,626...198,694,977 JBrowse link
G Smc2 structural maintenance of chromosomes 2 severity ISO human cell line in a mouse model RGD PMID:23095742 RGD:151356955 NCBI chr 5:71,592,428...71,648,636 JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ameliorates ISO RGD PMID:21282564 RGD:150520218 NCBI chr 3:166,511,616...166,559,463 JBrowse link
G Srsf4 serine and arginine rich splicing factor 4 ISO mRNA:decreased expression:colon mucosa (human) RGD PMID:9865741 RGD:11039405 NCBI chr 5:144,060,981...144,090,798 JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 ISO mRNA:decreased expression:colon mucosa (human) RGD PMID:9865741 RGD:11039405 NCBI chr 6:100,605,165...100,610,192 JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 ISO mRNA:decreased expression:colon mucosa (human) RGD PMID:9865741 RGD:11039405 NCBI chr 3:151,589,546...151,594,869 JBrowse link
G Stat1 signal transducer and activator of transcription 1 ISO DNA:SNPs:introns: (rs2280232, rs4327257) (human) RGD PMID:22121102 RGD:153323313 NCBI chr 9:56,911,522...56,951,926 JBrowse link
G Stat3 signal transducer and activator of transcription 3 treatment ISO human cells in mouse model
DNA:SNPs:introns: (rs12949918, rs6503695) (human)
RGD PMID:32504672 PMID:22121102 RGD:125097526, RGD:153323313 NCBI chr10:86,311,528...86,363,513 JBrowse link
G Stat5a signal transducer and activator of transcription 5A ISO DNA:SNP:intron: (rs7217728) (human) RGD PMID:22121102 RGD:153323313 NCBI chr10:86,285,859...86,310,187 JBrowse link
G Stat5b signal transducer and activator of transcription 5B ISO DNA:SNPs:introns: (rs6503691, rs7218653) (human) RGD PMID:22121102 RGD:153323313 NCBI chr10:85,704,841...85,775,856 JBrowse link
G Stat6 signal transducer and activator of transcription 6 ISO DNA:SNP:3' utr: (rs324015) (human) RGD PMID:22121102 RGD:153323313 NCBI chr 7:65,365,505...65,382,825 JBrowse link
G Tert telomerase reverse transcriptase treatment ISO RGD PMID:19903903 RGD:11038656 NCBI chr 1:29,637,213...29,659,561 JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO mRNA:increased expression:colorectum, Cancer Stem-like Cells (human) RGD PMID:31057717 RGD:150429686 NCBI chr 2:221,988,645...222,072,813 JBrowse link
G Tgfb1 transforming growth factor, beta 1 disease_progression ISO RGD PMID:9019169 RGD:13432089 NCBI chr 1:90,324,312...90,340,627 JBrowse link
G Tp73 tumor protein p73 ISO mRNA:increased expression:colon (human) RGD PMID:30420492 RGD:151347580 NCBI chr 5:169,903,801...169,988,075 JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 ameliorates
severity
ISO human cell line in a mouse model RGD PMID:29296225 PMID:28856538 RGD:151665195, RGD:151665199 NCBI chr 7:69,115,216...69,224,843 JBrowse link
G Vegfc vascular endothelial growth factor C IEP mRNA:increased expression:colon RGD PMID:18424890 RGD:2315488 NCBI chr16:44,445,293...44,560,887 JBrowse link
colon adenoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 ISO protein:increased expression:: RGD PMID:11809809 RGD:151356508 NCBI chr10:94,393,379...94,426,579 JBrowse link
G Cacna1d calcium voltage-gated channel subunit alpha1 D ISO protein:increased expression:colon (human) RGD PMID:29079724 RGD:152177516 NCBI chr16:5,227,157...5,521,163 JBrowse link
G Ccnd1 cyclin D1 severity ISO RGD PMID:11375949 RGD:151665121 NCBI chr 1:209,518,288...209,527,986 JBrowse link
G Ccnd2 cyclin D2 severity ISO RGD PMID:11375949 RGD:151665121 NCBI chr 4:161,653,048...161,675,422 JBrowse link
G Chka choline kinase alpha ISO protein:increased expression:colonic mucosa (human) RGD PMID:10363580 RGD:10401945 NCBI chr 1:210,506,069...210,554,753 JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 ISO RGD PMID:26194191 RGD:11086893 NCBI chr10:80,908,300...80,951,097 JBrowse link
G Rac1 Rac family small GTPase 1 ISO RGD PMID:12865273 RGD:13432048 NCBI chr12:16,150,411...16,170,864 JBrowse link
G Rbp4 retinol binding protein 4 ISO protein:increased expression:blood serum (human) RGD PMID:25712946 RGD:329849123 NCBI chr 1:235,893,917...235,901,315 JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO mRNA:decreased expression:colon (human) RGD PMID:29875879 RGD:150429665 NCBI chr 2:221,988,645...222,072,813 JBrowse link
colon cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acer3 alkaline ceramidase 3 severity ISO associated with colitis RGD PMID:26938296 RGD:35673322 NCBI chr 1:152,504,180...152,606,596 JBrowse link
G Actr1a actin related protein 1A ISO RGD PMID:26422100 RGD:13831341 NCBI chr 1:245,237,821...245,256,618 JBrowse link
G Acvr2a activin A receptor type 2A ISO RGD PMID:14988818 RGD:2301065 NCBI chr 3:53,614,143...53,701,933 JBrowse link
G Ada adenosine deaminase susceptibility ISO DNA:polymorphisms,haplotypes: :
protein:increased activity:colon
RGD PMID:20590444 PMID:15820509 RGD:152995263, RGD:152995289 NCBI chr 3:152,398,745...152,422,854 JBrowse link
G Akt1 AKT serine/threonine kinase 1 treatment
severity
IEP
ISO
human cells in mouse model
mRNA:increased expression:colon (human)
RGD PMID:33360052 PMID:31932471 PMID:31932471 RGD:127229954, RGD:152995462, RGD:152995462 NCBI chr 6:137,534,810...137,555,131 JBrowse link
G Akt3 AKT serine/threonine kinase 3 treatment ISO RGD PMID:20811704 RGD:13209140 NCBI chr13:91,475,839...91,758,060 JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 treatment IEP RGD PMID:22369161 RGD:13703116 NCBI chr 7:27,381,392...27,466,772 JBrowse link
G Apc APC regulator of WNT signaling pathway IAGP
ISO
DNA:nonsense mutation:cds: c. 7621C > A (p.S2523X) (rat)
ClinVar Annotator: match by term: Colon cancer
ClinVar
RGD
PMID:22675565 PMID:25741868 PMID:26467025 PMID:26692440 PMID:26837502 More... RGD:12792250 NCBI chr18:26,138,382...26,196,021 JBrowse link
G Apcm1Kyo APC, WNT signaling pathway regulator; mutant 1, Kyo IAGP RGD PMID:19694754 RGD:12792250
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IEP mRNA, protein:decreased expression:colon RGD PMID:12020819 RGD:625559 NCBI chr 4:155,800,030...155,828,515 JBrowse link
G Arid1a AT-rich interaction domain 1A treatment ISO human cells in mouse model RGD PMID:26069190 RGD:11072938 NCBI chr 5:151,192,014...151,269,291 JBrowse link
G Atg101 autophagy related 101 disease_progression ISO RGD PMID:34315829 RGD:153350092 NCBI chr 7:132,398,477...132,407,643 JBrowse link
G Atm ATM serine/threonine kinase ISO ClinVar Annotator: match by term: Colon cancer ClinVar NCBI chr 8:62,724,939...62,829,040 JBrowse link
G Atr ATR serine/threonine kinase disease_progression ISO DNA:mutations: : RGD PMID:17879369 RGD:150340676 NCBI chr 8:105,306,299...105,403,742 JBrowse link
G Aurka aurora kinase A ISO ClinVar Annotator: match by term: Colon cancer, susceptibility to ClinVar PMID:9771714 PMID:10511710 PMID:12881723 PMID:25741868 NCBI chr 3:181,546,742...181,562,890 JBrowse link
G Axin1 axin 1 treatment IEP RGD PMID:28032729 RGD:150530464 NCBI chr10:15,163,477...15,215,615 JBrowse link
G Azgp1 alpha-2-glycoprotein 1, zinc-binding severity ISO protein:increased expression:colon,serum RGD PMID:25561225 RGD:153350136 NCBI chr12:16,930,990...16,939,333 JBrowse link
G Bad BCL2-associated agonist of cell death treatment IDA RGD PMID:21214291 RGD:10053668 NCBI chr 1:213,562,719...213,572,034 JBrowse link
G Bcl2 BCL2, apoptosis regulator treatment IDA RGD PMID:21214291 RGD:10053668 NCBI chr13:23,204,464...23,366,900 JBrowse link
G Bik BCL2-interacting killer treatment ISO RGD PMID:17636408 RGD:14394819 NCBI chr 7:114,672,277...114,691,296 JBrowse link
G Birc3 baculoviral IAP repeat-containing 3 disease_progression ISO protein:increased expression:colon (human) RGD PMID:22751125 RGD:152998979 NCBI chr 8:13,285,702...13,313,329 JBrowse link
G Brca1 BRCA1, DNA repair associated susceptibility
disease_progression
ISO DNA:mutation RGD PMID:7907678 PMID:33583275 RGD:1599497, RGD:126925959 NCBI chr10:86,917,693...86,978,012 JBrowse link
G Brd4 bromodomain containing 4 ISO RGD PMID:22120039 RGD:9586351 NCBI chr 7:11,866,997...11,946,575 JBrowse link
G Calr calreticulin ameliorates
treatment
ISO human cell line and recombinant gene in a mouse model
protein:increased expression:colon (human)
RGD PMID:17187072 PMID:19256344 PMID:29573475 PMID:20480531 PMID:19881547 RGD:150521684, RGD:150521701, RGD:150521694, RGD:150521693, RGD:150521692 NCBI chr19:40,213,367...40,218,262 JBrowse link
G Casp3 caspase 3 disease_progression ISO protein:decreased expression:colon RGD PMID:17805550 PMID:23979166 RGD:13209142, RGD:13209143 NCBI chr16:52,395,539...52,413,794 JBrowse link
G Casp7 caspase 7 disease_progression ISO RGD PMID:23979166 RGD:13209143 NCBI chr 1:265,442,647...265,481,938 JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IEP RGD PMID:21268133 RGD:5135051 NCBI chr10:67,503,077...67,504,875 JBrowse link
G Ccl3 C-C motif chemokine ligand 3 IEP RGD PMID:21268133 RGD:5135051 NCBI chr10:68,948,889...68,950,439 JBrowse link
G Ccnd2 cyclin D2 IEP mRNA:increased expression:colon RGD PMID:15059925 RGD:2289181 NCBI chr 4:161,653,048...161,675,422 JBrowse link
G Ccng2 cyclin G2 ISO mRNA:decreased expression:colon,rectum (human) RGD PMID:27982046 RGD:151361200 NCBI chr14:15,088,694...15,097,190 JBrowse link
G Cd274 CD274 molecule treatment ISO RGD PMID:28424330 RGD:41410791 NCBI chr 1:236,526,215...236,549,956 JBrowse link
G Cdh1 cadherin 1 ISO ClinVar Annotator: match by term: Malignant tumor of colon ClinVar PMID:15235021 PMID:16924464 PMID:17545690 PMID:19268661 PMID:20233471 More... NCBI chr19:51,402,178...51,471,572 JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A disease_progression ISO mRNA,protein:increased expression:colonic mucosa: RGD PMID:24845563 PMID:24845563 RGD:9587457, RGD:9587457 NCBI chr 9:873,953...900,701 JBrowse link
G Chek2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Colon cancer ClinVar PMID:15095295 PMID:21244692 PMID:22114986 PMID:22419737 PMID:22862163 More... NCBI chr12:51,448,838...51,481,159 JBrowse link
G Chka choline kinase alpha IEP mRNA, protein:increased expression:colon (rat) RGD PMID:10622531 RGD:10401869 NCBI chr 1:210,506,069...210,554,753 JBrowse link
G Chuk component of inhibitor of nuclear factor kappa B kinase complex ISO protein:increased expression:colon (human) RGD PMID:16774932 RGD:153305944 NCBI chr 1:252,908,748...252,944,273 JBrowse link
G Col6a3 collagen type VI alpha 3 chain ISO protein:increased expression:serum (human) RGD PMID:32245981 RGD:401900121 NCBI chr 9:98,809,171...98,887,060 JBrowse link
G Cripto cripto, EGF-CFC family member treatment ISO RGD PMID:15173016 RGD:11561894 NCBI chr 8:110,924,774...110,938,545 JBrowse link
G Crp C-reactive protein IEP protein:increased expression:serum: RGD PMID:23008118 RGD:6903278 NCBI chr13:87,694,062...87,695,978 JBrowse link
G Cyp24a1 cytochrome P450, family 24, subfamily a, polypeptide 1 susceptibility ISO mRNA:increased expression:colon (human)
DNA:SNPs:introns: (rs4809960, rs6022999) (human)
DNA:SNPs:multiple (human)
DNA:SNP:intron: IVS4-66T>G, (rs4809958) (human)
RGD PMID:16180015 PMID:31740231 PMID:28811712 PMID:19706847 RGD:151361183, RGD:151665338, RGD:151665177, RGD:151665174 NCBI chr 3:179,694,647...179,709,083 JBrowse link
G Cyp2e1 cytochrome P450, family 2, subfamily e, polypeptide 1 treatment IEP RGD PMID:30720227 RGD:14700924 NCBI chr 1:205,269,967...205,280,365 JBrowse link
G Cysltr1 cysteinyl leukotriene receptor 1 ISO associated with Experimental Colitis RGD PMID:28410235 RGD:40903055 NCBI chr  X:75,734,281...75,762,873 JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 ameliorates ISO associated with colitis; RGD PMID:31278373 RGD:155791667 NCBI chr10:87,804,893...87,852,181 JBrowse link
G Esr2 estrogen receptor 2 IDA RGD PMID:19141699 RGD:8694174 NCBI chr 6:100,589,553...100,645,240 JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit disease_progression ISO RGD PMID:19773751 RGD:126781702 NCBI chr 4:76,624,399...76,687,362 JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 treatment ISO human cells in mouse model RGD PMID:17599042 RGD:150520062 NCBI chr17:9,466,686...9,481,423 JBrowse link
G Gpx1 glutathione peroxidase 1 treatment ISO associated with Inflammation
mRNA, protein:increased expression:colon (human)
RGD PMID:28045589 PMID:21868509 RGD:152995480, RGD:152995496 NCBI chr 8:117,905,462...117,906,588 JBrowse link
G Gpx2 glutathione peroxidase 2 treatment ISO associated with Inflammation RGD PMID:28045589 RGD:152995480 NCBI chr 6:101,226,745...101,230,033 JBrowse link
G Gpx3 glutathione peroxidase 3 disease_progression ISO associated with Experimental Colitis RGD PMID:23221387 RGD:151665510 NCBI chr10:39,529,335...39,537,406 JBrowse link
G Gpx4 glutathione peroxidase 4 disease_progression ISO mRNA, protein:increased expression:colon (human) RGD PMID:21868509 RGD:152995496 NCBI chr 7:10,300,833...10,303,629 JBrowse link
G Gsk3b glycogen synthase kinase 3 beta treatment IEP RGD PMID:22561258 RGD:10045586 NCBI chr11:76,004,502...76,154,665 JBrowse link
G Hs3st2 heparan sulfate-glucosamine 3-sulfotransferase 2 ISO DNA:hypermethylation:promoter (human) RGD PMID:12527896 RGD:2317633 NCBI chr 1:175,956,161...176,077,400 JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 ISO protein:increased expression:colon (human) RGD PMID:16774932 RGD:153305944 NCBI chr 6:135,523,604...135,529,687 JBrowse link
G Htra1 HtrA serine peptidase 1 disease_progression ISO DNA:SNP:cds: (rs1049331) (human) RGD PMID:32218415 RGD:152985527 NCBI chr 1:185,497,815...185,547,380 JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta IEP associated with Obesity;protein:increased expression:large intestine mucosa RGD PMID:20143392 RGD:7495781 NCBI chr16:76,021,968...76,075,717 JBrowse link
G Il10 interleukin 10 no_association ISO DNA:SNP:promoter:-592C>A (rs1800872) (human)
DNA:SNP: :rs1800896 (human)
RGD PMID:27468578 PMID:27468578 RGD:11534627, RGD:11534627 NCBI chr13:45,024,921...45,029,586 JBrowse link
G Il33 interleukin 33 treatment IEP associated with colitis; RGD PMID:31407335 RGD:39939040 NCBI chr 1:227,701,964...227,736,374 JBrowse link
G Il7r interleukin 7 receptor disease_progression ISO DNA:deletion: : RGD PMID:29755661 RGD:126779581 NCBI chr 2:58,452,393...58,477,757 JBrowse link
G Jak2 Janus kinase 2 treatment IEP RGD PMID:33360052 RGD:127229954 NCBI chr 1:236,408,905...236,468,769 JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit ISO RNA:decreased expression:colon (human) RGD PMID:11751871 RGD:151347667 NCBI chr19:23,176,265...23,178,049 JBrowse link
G Kdm3a lysine demethylase 3A severity ISO human gene in a mouse model RGD PMID:19858293 RGD:9590225 NCBI chr 4:103,630,907...103,675,073 JBrowse link
G Kdm5c lysine demethylase 5C ISO mRNA:increased expression:colon (human) RGD PMID:33042830 RGD:151361176 NCBI chr  X:21,345,459...21,387,045 JBrowse link
G Lalba lactalbumin, alpha onset ISO RGD PMID:25036966 RGD:38599174 NCBI chr 7:129,625,531...129,628,034 JBrowse link
G Lcn2 lipocalin 2 treatment IEP RGD PMID:20043115 RGD:2316492 NCBI chr 3:36,078,432...36,081,851 JBrowse link
G Lgals3 galectin 3 treatment IEP RGD PMID:28032729 RGD:150530464 NCBI chr15:20,620,083...20,632,019 JBrowse link
G Lif LIF, interleukin 6 family cytokine ameliorates ISO human cells in mouse model RGD PMID:29899555 RGD:151356919 NCBI chr14:83,354,602...83,364,053 JBrowse link
G Lrp1b LDL receptor related protein 1B ISO human cells in a mouse moel RGD PMID:28408316 RGD:150429777 NCBI chr 3:24,594,302...26,715,037 JBrowse link
G Map2k3 mitogen activated protein kinase kinase 3 ISO RGD PMID:24233520 RGD:7495808 NCBI chr10:46,107,639...46,128,986 JBrowse link
G Map2k7 mitogen activated protein kinase kinase 7 ISO mRNA:splice variant:exon 2: (human) RGD PMID:32601196 RGD:155230826 NCBI chr12:7,389,032...7,398,377 JBrowse link
G Mapk1 mitogen activated protein kinase 1 treatment IEP RGD PMID:19876598 RGD:401976467 NCBI chr11:97,462,025...97,529,193 JBrowse link
G Mapk14 mitogen activated protein kinase 14 susceptibility ISO DNA:SNP:intron: (rs10807156) (human)
DNA:SNP:intron: (rs851016) (human)
RGD PMID:23859041 PMID:23027623 RGD:150573807, RGD:13217411 NCBI chr20:6,751,288...6,812,294 JBrowse link
G Mcl1 MCL1 apoptosis regulator, BCL2 family member ameliorates ISO human cells in mouse model RGD PMID:29899555 RGD:151356919 NCBI chr 2:185,884,840...185,912,532 JBrowse link
G Mir10a microRNA 10a disease_progression ISO human cells in mouse model;RNA:increased expression:colon,exosome (human) RGD PMID:28211508 RGD:153344546 NCBI chr10:81,283,171...81,283,280 JBrowse link
G Mir126a microRNA 126a disease_progression ISO human cells in mouse model;RNA:increased expression:colon,exosome (human) RGD PMID:18663744 PMID:28211508 RGD:13432043, RGD:153344546 NCBI chr 3:29,813,150...29,813,267 JBrowse link
G Mir126b microRNA 126b ISO RGD PMID:18663744 RGD:13432043 NCBI chr 3:9,415,087...9,415,159 JBrowse link
G Mir136 microRNA 136 disease_progression ISO RNA:decreased expression:colon (human) RGD PMID:28710032 PMID:29339925 RGD:153344627, RGD:153345546 NCBI chr 6:128,549,096...128,549,177 JBrowse link
G Mir143 microRNA 143 disease_progression ISO RNA:decreased expression:peripheral blood mononuclear cell (human) RGD PMID:32104069 RGD:153297766 NCBI chr18:55,101,006...55,101,110 JBrowse link
G Mir145 microRNA 145 ISO RNA:increased expression:peripheral blood mononuclear cell (human) RGD PMID:32104069 RGD:153297766 NCBI chr18:57,369,983...57,370,070 JBrowse link
G Mir148a microRNA 148a disease_progression ISO human cells in mouse model;RNA:increased expression:colon,exosome (human) RGD PMID:28211508 RGD:153344546 NCBI chr 4:80,333,762...80,333,858 JBrowse link
G Mir151 microRNA 151 disease_progression ISO human cells in mouse model;RNA:decreased expression:colon,exosome (human) RGD PMID:28211508 RGD:153344546 NCBI chr 7:105,172,377...105,172,473 JBrowse link
G Mir155 microRNA 155 treatment ISO miRNA:increased expression:colon RGD PMID:29552117 PMID:26744471 PMID:29552117 RGD:21081546, RGD:11520828, RGD:21081546 NCBI chr11:37,261,114...37,261,178 JBrowse link
G Mir193a microRNA 193a ameliorates
exacerbates
ISO human cells in mouse model RGD PMID:28211508 PMID:30575330 RGD:153344546, RGD:153344588 NCBI chr10:64,672,343...64,672,454 JBrowse link
G Mir196a1 microRNA 196a-1 disease_progression ISO human cells in mouse model;RNA:decreased expression:colon,exosome (human) RGD PMID:28211508 RGD:153344546 NCBI chr10:81,231,006...81,231,085 JBrowse link
G Mir196b microRNA 196b disease_progression ISO human cells in mouse model;RNA:decreased expression:colon,exosome (human) RGD PMID:28211508 RGD:153344546 NCBI chr 4:81,330,487...81,330,571 JBrowse link
G Mir200b microRNA 200b ISO human cells in mouse model;RNA:increased expression:colon,exosome (human) RGD PMID:28211508 RGD:153344546 NCBI chr 5:171,931,495...171,931,589 JBrowse link
G Mir21 microRNA 21 disease_progression ISO RNA:increased expression:colon (human)
RNA:increased expression:peripheral blood mononuclear cell (human)
RGD PMID:27798874 PMID:32104069 RGD:152995486, RGD:153297766 NCBI chr10:71,902,600...71,902,691 JBrowse link
G Mir22 microRNA 22 disease_progression ISO human cells in mouse model;RNA:increased expression:colon,exosome (human) RGD PMID:28211508 RGD:153344546 NCBI chr10:60,307,039...60,307,133 JBrowse link
G Mir30b microRNA 30b disease_progression ISO human cells in mouse model;RNA:increased expression:colon,exosome (human) RGD PMID:28211508 RGD:153344546 NCBI chr 7:102,021,543...102,021,629 JBrowse link
G Mki67 marker of proliferation Ki-67 treatment IEP RGD PMID:33360052 RGD:127229954 NCBI chr 1:199,926,150...199,952,847 JBrowse link
G Mlh1 mutL homolog 1 disease_progression ISO ClinVar Annotator: match by term: Colon cancer | ClinVar Annotator: match by term: Malignant tumor of colon ClinVar
RGD
PMID:8566964 PMID:8574961 PMID:8592341 PMID:08808596 PMID:9311737 More... RGD:126790577 NCBI chr 8:120,074,871...120,112,109 JBrowse link
G Mmp3 matrix metallopeptidase 3 treatment IEP RGD PMID:20043115 RGD:2316492 NCBI chr 8:12,925,267...12,938,828 JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease susceptibility ISO DNA:SNP:3'utr: (rs2155209) (human) RGD PMID:26735576 RGD:151361212 NCBI chr 8:19,900,211...19,961,906 JBrowse link
G Msh2 mutS homolog 2 disease_progression
no_association
ISO DNA, mRNA:loss of heterogeneity, increased expression: :colon
ClinVar Annotator: match by term: Colon cancer
DNA:SNP:intron:IVS10+12G>A (human)
ClinVar
RGD
PMID:25741868 PMID:28492532 PMID:33357406 PMID:29715107 PMID:28411881 More... RGD:126790554, RGD:126790577, RGD:126790554 NCBI chr 6:12,567,368...12,626,534 JBrowse link
G Mtor mechanistic target of rapamycin kinase treatment IEP RGD PMID:33360052 RGD:127229954 NCBI chr 5:164,167,985...164,277,438 JBrowse link
G Mtus1 microtubule associated scaffold protein 1 ISO mRNA, protein:decreased expression:colon (human) RGD PMID:19956880 RGD:2317016 NCBI chr16:57,905,991...58,051,466 JBrowse link
G Muc2 mucin 2, oligomeric mucus/gel-forming IEP mRNA:decreased expression:colon
protein:decreased expression:colon
RGD PMID:20459814 PMID:17847023 RGD:7349368, RGD:7349371 NCBI chr 1:206,225,775...206,261,280 JBrowse link
G Mutyh mutY DNA glycosylase ISO ClinVar Annotator: match by term: Colon cancer | ClinVar Annotator: match by term: Malignant tumor of colon ClinVar PMID:2914711 PMID:9536098 PMID:11818965 PMID:12606733 PMID:12853198 More... NCBI chr 5:130,274,034...130,286,149 JBrowse link
G Mycbp2 MYC binding protein 2 disease_progression ISO RGD PMID:30318507 RGD:596938165 NCBI chr15:86,352,061...86,590,126 JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor ameliorates ISO RGD PMID:23184679 RGD:150520021 NCBI chr 8:127,952,161...127,956,230 JBrowse link
G Nanog Nanog homeobox treatment IDA RGD PMID:22641368 RGD:7240527 NCBI chr 4:155,943,737...155,951,116 JBrowse link
G Ncoa6 nuclear receptor coactivator 6 ISO DNA:amplification:cds (human) RGD PMID:10567404 RGD:9590137 NCBI chr 3:143,890,896...143,961,916 JBrowse link
G Nf1 neurofibromin 1 ISO mRNA:increased expression:colon (human) RGD PMID:15840687 RGD:150429699 NCBI chr10:64,803,986...65,037,086 JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 IDA RGD PMID:19424637 RGD:5133247 NCBI chr19:52,205,374...52,220,267 JBrowse link
G Nr5a2 nuclear receptor subfamily 5, group A, member 2 ISO RNA:increased expression:colon (human) RGD PMID:28710032 RGD:153344627 NCBI chr13:50,865,253...50,985,107 JBrowse link
G Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 ISO RGD PMID:18663744 RGD:13432043 NCBI chr16:18,699,389...18,708,045 JBrowse link
G Pik3r5 phosphoinositide-3-kinase, regulatory subunit 5 ISO DNA:hypermethylation RGD PMID:15123805 RGD:13432047 NCBI chr10:53,631,469...53,699,550 JBrowse link
G Pkhd1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin ISO ClinVar Annotator: match by term: Malignant tumor of colon ClinVar PMID:12846734 PMID:14741187 PMID:15805161 PMID:21493627 PMID:25646624 More... NCBI chr 9:30,040,466...30,533,834 JBrowse link
G Plcg1 phospholipase C, gamma 1 treatment IEP RGD PMID:7812955 RGD:151356942 NCBI chr 3:169,805,299...169,836,040 JBrowse link
G Plk4 polo-like kinase 4 ISO protein:increased expression:colon RGD PMID:26439168 RGD:11075990 NCBI chr 2:125,730,480...125,748,894 JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Colon cancer ClinVar PMID:21376568 PMID:24362816 PMID:25741868 PMID:28492532 PMID:30376427 More... NCBI chr12:10,676,818...10,701,161 JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO ClinVar Annotator: match by term: Malignant tumor of colon ClinVar PMID:25741868 PMID:26467025 PMID:28492532 NCBI chr 1:104,161,984...104,178,074 JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO ClinVar Annotator: match by term: Colon cancer ClinVar PMID:25741868 PMID:28492532 NCBI chr12:52,005,155...52,053,761 JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma ISO DNA:frameshift mutation:c.472delA (human) RGD PMID:10394368 RGD:1601444 NCBI chr 4:150,095,743...150,221,104 JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ISO RGD PMID:20622004 RGD:5685669 NCBI chr 2:55,967,766...56,003,450 JBrowse link
G Pten phosphatase and tensin homolog ISO mRNA:decreased expression:colon (human) RGD PMID:21806946 RGD:12859043 NCBI chr 1:240,043,707...240,110,330 JBrowse link
G Ptger3 prostaglandin E receptor 3 IEP mRNA:decreased expression:colon mucosa (rat) RGD PMID:15247185 RGD:9850265 NCBI chr 2:246,606,131...246,750,970 JBrowse link
G Ptgis prostaglandin I2 synthase exacerbates ISO RGD PMID:26611322 RGD:11536046 NCBI chr 3:155,928,564...155,964,228 JBrowse link
G Ptpn13 protein tyrosine phosphatase, non-receptor type 13 treatment ISO RGD PMID:29899829 RGD:152975627 NCBI chr14:6,412,841...6,587,238 JBrowse link
G Ptprt protein tyrosine phosphatase, receptor type, T exacerbates ISO RGD PMID:20133777 PMID:27447856 RGD:150520184, RGD:150520192 NCBI chr 3:150,189,343...151,288,145 JBrowse link
G Rad52 RAD52 homolog, DNA repair protein susceptibility ISO DNA:SNPs:3'utr: (rs1051669, rs11571475) (human) RGD PMID:26735576 RGD:151361212 NCBI chr 4:153,106,062...153,128,598 JBrowse link
G Reg1a regenerating family member 1 alpha IEP mRNA:increased expression:colon mucosa (human) RGD PMID:2332435 RGD:9850131 NCBI chr 4:112,450,466...112,453,130 JBrowse link
G Rictor RPTOR independent companion of MTOR, complex 2 severity ISO protein:increased expression:colon (human)
human cells in mouse model
mRNA:increased expression:colon (human)
RGD PMID:24244675 PMID:20226010 PMID:31932471 RGD:152995458, RGD:152995494, RGD:152995462 NCBI chr 2:57,539,279...57,631,291 JBrowse link
G Rnaset2 ribonuclease T2 ISO RGD PMID:32197460 RGD:153002804 NCBI chr 1:52,576,344...52,603,151 JBrowse link
G Rnf43 ring finger protein 43 disease_progression ISO mRNA:increased expression:colon (human) RGD PMID:26350900 RGD:11053240 NCBI chr10:72,958,744...73,034,540 JBrowse link
G Rps6kb1 ribosomal protein S6 kinase B1 treatment IEP RGD PMID:33360052 RGD:127229954 NCBI chr10:71,817,794...71,865,211 JBrowse link
G Slc7a5 solute carrier family 7 member 5 treatment ISO RGD PMID:19900191 RGD:151361295 NCBI chr19:66,843,808...66,872,412 JBrowse link
G Slco1b2 solute carrier organic anion transporter family member 1B2 disease_progression ISO mRNA:increased expression:colon (human) RGD PMID:25625007 RGD:152995427 NCBI chr 4:176,282,577...176,355,557 JBrowse link
G Smad2 SMAD family member 2 treatment IEP RGD PMID:33360052 RGD:127229954 NCBI chr18:72,124,792...72,193,345 JBrowse link
G Smad4 SMAD family member 4 treatment
severity
IEP
ISO
mRNA:decreased expression:colon (human) RGD PMID:33360052 PMID:31932471 RGD:127229954, RGD:152995462 NCBI chr18:69,518,988...69,549,684 JBrowse link
G Smo smoothened, frizzled class receptor ISO protein:increased expression:colon RGD PMID:23098507 RGD:150340555 NCBI chr 4:59,311,084...59,341,280 JBrowse link
G Socs1 suppressor of cytokine signaling 1 ameliorates ISO RGD PMID:19469017 RGD:150573701 NCBI chr10:5,389,574...5,391,265 JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase disease_progression ISO DNA:nonsense mutation
ClinVar Annotator: match by term: Colon cancer, advanced
ClinVar
RGD
PMID:9988270 PMID:9988270 PMID:7678609 RGD:1601371, RGD:150521542 NCBI chr 3:166,511,616...166,559,463 JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 ISO protein:increased expression:colon (human) RGD PMID:17310252 RGD:11038730 NCBI chr10:73,335,519...73,342,549 JBrowse link
G Stat3 signal transducer and activator of transcription 3 treatment
ameliorates
IEP
ISO
human cells in mouse model RGD PMID:33360052 PMID:29899555 RGD:127229954, RGD:151356919 NCBI chr10:86,311,528...86,363,513 JBrowse link
G Tff3 trefoil factor 3 IEP protein:decreased expression:colon RGD PMID:17847023 RGD:7349371 NCBI chr20:9,193,259...9,197,969 JBrowse link
G Tgfb1 transforming growth factor, beta 1 treatment IEP RGD PMID:33360052 RGD:127229954 NCBI chr 1:90,324,312...90,340,627 JBrowse link
G Tgfb3 transforming growth factor, beta 3 disease_progression ISO RGD PMID:18360718 RGD:13432091 NCBI chr 6:111,435,170...111,457,646 JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO RGD PMID:14988818 RGD:2301065 NCBI chr 8:124,672,677...124,761,741 JBrowse link
G Tnfaip3 TNF alpha induced protein 3 treatment ISO protein:decreased expression:colon (human)
mRNA,protein:increased expression:colon (human)
associated with Experimental Colitis
RGD PMID:27991929 PMID:24099634 PMID:27991929 RGD:151347529, RGD:151347624, RGD:151347529 NCBI chr 1:15,528,921...15,543,993 JBrowse link
G Tnfrsf10b TNF receptor superfamily member 10b disease_progression IEP mRNA:increased expression:colon RGD PMID:20428773 RGD:2325778 NCBI chr15:51,249,883...51,278,091 JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 exacerbates ISO mRNA:increased expression:colon (human) RGD PMID:29441938 RGD:151665201 NCBI chr 7:69,115,216...69,224,843 JBrowse link
G Vegfa vascular endothelial growth factor A IEP RGD PMID:21268133 RGD:5135051 NCBI chr 9:22,452,854...22,468,194 JBrowse link
G Wnt5a Wnt family member 5A treatment IEP RGD PMID:28032729 RGD:150530464 NCBI chr16:3,702,300...3,724,860 JBrowse link
G Xrcc2 X-ray repair cross complementing 2 ISO ClinVar Annotator: match by term: Colon cancer ClinVar PMID:23054243 PMID:25637381 PMID:25741868 PMID:27233470 PMID:28492532 More... NCBI chr 4:10,157,130...10,237,089 JBrowse link
colon carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:17611497 PMID:18954143 PMID:21793738 PMID:23237847 PMID:25741868 More... NCBI chr 6:137,534,810...137,555,131 JBrowse link
G Aopep aminopeptidase O ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25058500 PMID:27165003 NCBI chr17:1,817,001...2,133,008 JBrowse link
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:1316610 PMID:1324223 PMID:1338764 PMID:1338904 PMID:1528264 More... NCBI chr18:26,138,382...26,196,021 JBrowse link
G Atm ATM serine/threonine kinase ISO ClinVar Annotator: match by term: Carcinoma of colon
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:8845835 PMID:9792409 PMID:9887333 PMID:10425038 PMID:10817650 More... NCBI chr 8:62,724,939...62,829,040 JBrowse link
G Axin2 axin 2 ISO protein:increased expression:colon mucosa:
ClinVar Annotator: match by term: Carcinoma of colon
ClinVar
RGD
PMID:11017067 PMID:15042511 PMID:21416598 PMID:25741868 PMID:28492532 More... RGD:151356508 NCBI chr10:94,393,379...94,426,579 JBrowse link
G Bard1 BRCA1 associated RING domain 1 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:19197335 PMID:20077502 PMID:25741868 PMID:26350354 PMID:26467025 More... NCBI chr 9:80,069,960...80,144,167 JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:9020077 PMID:9453486 PMID:9531611 PMID:10984511 NCBI chr 1:105,076,472...105,081,906 JBrowse link
G Bcl10 BCL10, immune signaling adaptor ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:9989495 NCBI chr 2:237,501,181...237,510,821 JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:12417513 PMID:14526373 PMID:15235019 PMID:18823382 PMID:23399955 More... NCBI chr16:9,740,751...9,786,861 JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase treatment ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma ClinVar
RGD
PMID:12068308 PMID:12198537 PMID:12447372 PMID:12619120 PMID:12644542 More... RGD:11567267 NCBI chr 4:69,329,772...69,476,931 JBrowse link
G Brca1 BRCA1, DNA repair associated ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25741868 PMID:26295337 PMID:26467025 PMID:28492532 PMID:31911673 More... NCBI chr10:86,917,693...86,978,012 JBrowse link
G Brca2 BRCA2, DNA repair associated ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:11030418 PMID:12491487 PMID:15744044 PMID:15937982 PMID:15983021 More... NCBI chr12:4,895,092...4,939,340 JBrowse link
G Brip1 BRCA1 interacting DNA helicase 1 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:16116423 PMID:16280053 PMID:17033622 PMID:18483852 PMID:21964575 More... NCBI chr10:71,402,035...71,528,083 JBrowse link
G Bub1 BUB1 mitotic checkpoint serine/threonine kinase ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:9521327 NCBI chr 3:135,473,525...135,504,921 JBrowse link
G Bub1b BUB1 mitotic checkpoint serine/threonine kinase B ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:9521327 PMID:24728327 PMID:25741868 PMID:28492532 NCBI chr 3:126,017,019...126,069,470 JBrowse link
G C8h11orf65 similar to human chromosome 11 open reading frame 65 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:8845835 PMID:17910737 PMID:19404735 PMID:20305132 PMID:21665257 More... NCBI chr 8:53,796,033...53,825,277 JBrowse link
G Calr calreticulin treatment ISO human cells and recombinant protein in a mouse model RGD PMID:9858521 RGD:150521687 NCBI chr19:40,213,367...40,218,262 JBrowse link
G Cdh1 cadherin 1 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:25583476 PMID:25741868 PMID:26467025 PMID:28492532 PMID:30287823 More... NCBI chr19:51,402,178...51,471,572 JBrowse link
G Chek2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:14612911 PMID:15087378 PMID:17721994 PMID:18571837 PMID:21244692 More... NCBI chr12:51,448,838...51,481,159 JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein ISO RGD PMID:16391854 RGD:7488899 NCBI chr11:97,033,033...97,067,457 JBrowse link
G Ctnnb1 catenin beta 1 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma ClinVar PMID:9065402 PMID:9294210 PMID:10192393 PMID:23033978 PMID:24614104 More... NCBI chr 8:129,517,576...129,544,661 JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 treatment ISO RGD PMID:30381616 RGD:27095891 NCBI chr14:15,989,066...15,991,263 JBrowse link
G Cxcl6 C-X-C motif chemokine ligand 6 disease_progression IMP RGD PMID:18413816 RGD:5135268 NCBI chr14:17,310,790...17,312,250 JBrowse link
G Dcc DCC netrin 1 receptor ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:8188295 NCBI chr18:64,868,987...65,972,783 JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:10649492 NCBI chr16:55,246,716...55,671,441 JBrowse link
G Efnb2 ephrin B2 ameliorates ISO human cells in mouse model RGD PMID:15083195 RGD:153305907 NCBI chr16:80,783,389...80,827,420 JBrowse link
G Ep300 E1A binding protein p300 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma ClinVar PMID:10700188 PMID:25741868 NCBI chr 7:114,987,857...115,058,652 JBrowse link
G Epcam epithelial cell adhesion molecule ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar NCBI chr 6:12,633,715...12,649,678 JBrowse link
G Fancc FA complementation group C ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25058500 PMID:27165003 NCBI chr17:1,686,374...1,818,672 JBrowse link
G Fance FA complementation group E ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25058500 PMID:27165003 PMID:28492532 PMID:34687117 NCBI chr20:6,369,416...6,386,631 JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma ClinVar PMID:1908846 PMID:7649548 PMID:7670477 PMID:7702086 PMID:7773297 More... NCBI chr14:81,211,800...81,227,215 JBrowse link
G Flcn folliculin ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:12843323 PMID:15805188 PMID:15852235 PMID:16199547 PMID:18234728 More... NCBI chr10:45,088,164...45,107,581 JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25741868 NCBI chr12:12,333,050...12,504,750 JBrowse link
G Flt3lg Fms related receptor tyrosine kinase 3 ligand treatment ISO RGD PMID:10842197 RGD:11049504 NCBI chr 1:104,751,518...104,756,925 JBrowse link
G Flt4 Fms related receptor tyrosine kinase 4 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25741868 PMID:28492532 NCBI chr10:34,414,834...34,455,878 JBrowse link
G Foxa1 forkhead box A1 disease_progression ISO RGD PMID:33296605 RGD:151665748 NCBI chr 6:75,099,907...75,136,534 JBrowse link
G Hpgd 15-hydroxyprostaglandin dehydrogenase ISO DNA:::adenoviral delivery of human gene in mouse model of colon cancer RGD PMID:19494278 RGD:5688759 NCBI chr16:33,986,265...34,024,228 JBrowse link
G Igf2r insulin-like growth factor 2 receptor ISO protein:increased expression:serum: RGD PMID:29940770 RGD:14985218 NCBI chr 1:50,526,878...50,615,265 JBrowse link
G Kdr kinase insert domain receptor treatment ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar
RGD
PMID:12415261 RGD:126925192 NCBI chr14:32,572,031...32,615,204 JBrowse link
G Kmt2d lysine methyltransferase 2D ISO protein:increased expression:colon RGD PMID:20433758 RGD:150523761 NCBI chr 7:129,980,744...130,022,088 JBrowse link
G Mcc MCC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar NCBI chr18:36,794,206...37,266,237 JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:7757073 PMID:8521398 PMID:8571956 PMID:8574961 PMID:8581513 More... NCBI chr 8:120,074,871...120,112,109 JBrowse link
G Mlh3 mutL homolog 3 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:11317354 PMID:28492532 PMID:35292633 NCBI chr 6:104,881,483...104,917,686 JBrowse link
G Msh2 mutS homolog 2 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:187139 PMID:625353 PMID:3258778 PMID:3616036 PMID:6096739 More... NCBI chr 6:12,567,368...12,626,534 JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:1548301 PMID:3049887 PMID:8838326 PMID:9345684 PMID:9536098 More... NCBI chr 6:12,316,190...12,333,505 JBrowse link
G Mt-nd1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:9299504 PMID:9806551 PMID:10519336 PMID:10521313 PMID:13298683 More... NCBI chr MT:2,740...3,694
NCBI chr MT:2,740...3,694
NCBI chr MT:2,740...3,694
JBrowse link
G Mutyh mutY DNA glycosylase ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:517270 PMID:2914711 PMID:9536098 PMID:11051386 PMID:11295288 More... NCBI chr 5:130,274,034...130,286,149 JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor treatment ISO mouse cell line in a mouse model RGD PMID:20823152 RGD:150520170 NCBI chr 8:127,952,161...127,956,230 JBrowse link
G Nbn nibrin ISO ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:11325820 PMID:14559852 PMID:15338273 PMID:16474176 PMID:16810201 More... NCBI chr 5:34,256,678...34,291,163 JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:3102434 PMID:18633438 PMID:25741868 NCBI chr 2:193,271,399...193,282,023 JBrowse link
G Palb2 partner and localizer of BRCA2 ISO ClinVar Annotator: match by term: Carcinoma of colon
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:3040479 PMID:18053174 PMID:21285249 PMID:21365267 PMID:21618343 More... NCBI chr 1:176,665,076...176,689,053 JBrowse link
G Pdgfra platelet derived growth factor receptor alpha ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:24033266 PMID:25741868 PMID:28492532 NCBI chr14:33,360,027...33,408,604 JBrowse link
G Pdgfrl platelet-derived growth factor receptor-like ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:7898930 NCBI chr16:51,347,929...51,407,850 JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha ISO ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chr 2:117,103,643...117,177,411 JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:285143 PMID:2402700 PMID:9536098 PMID:9683794 PMID:10037723 More... NCBI chr12:10,676,818...10,701,161 JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:15322521 PMID:15766587 PMID:19966286 PMID:25032700 PMID:25637381 More... NCBI chr 1:104,161,984...104,178,074 JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:15766587 PMID:16199547 PMID:23230001 PMID:23263490 PMID:23447401 More... NCBI chr12:52,005,155...52,053,761 JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma ClinVar PMID:10394368 PMID:25741868 NCBI chr 4:150,095,743...150,221,104 JBrowse link
G Prf1 perforin 1 IDA RGD PMID:22420317 RGD:6482822 NCBI chr20:29,246,202...29,251,712 JBrowse link
G Pten phosphatase and tensin homolog ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:10555148 PMID:12372056 PMID:21194675 PMID:21659347 PMID:21956414 More... NCBI chr 1:240,043,707...240,110,330 JBrowse link
G Ptpn12 protein tyrosine phosphatase, non-receptor type 12 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:7509295 NCBI chr 4:14,020,997...14,092,931 JBrowse link
G Ptprj protein tyrosine phosphatase, receptor type, J ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:12089527 PMID:25741868 PMID:33116287 NCBI chr 3:96,861,785...97,017,702 JBrowse link
G Rad51c RAD51 paralog C ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:16199547 PMID:20400964 PMID:21537932 PMID:21990120 PMID:22538716 More... NCBI chr10:72,702,299...72,728,980 JBrowse link
G Rad51d RAD51 paralog D ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25741868 PMID:28492532 NCBI chr10:67,805,720...67,824,452 JBrowse link
G Rad54b RAD54 homolog B ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:10362364 NCBI chr 5:29,829,465...29,901,967 JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25058500 PMID:27165003 NCBI chr20:44,686,482...44,844,668 JBrowse link
G RT1-Ba RT1 class II, locus Ba susceptibility ISO DNA:polymorphism: :HLA-DQA1*0201 (human) RGD PMID:11972882 RGD:126925990 NCBI chr20:4,575,134...4,579,727 JBrowse link
G Slco1b2 solute carrier organic anion transporter family member 1B2 ISO mRNA,protein:increased expression:colon (human) RGD PMID:19074900 RGD:152995419 NCBI chr 4:176,282,577...176,355,557 JBrowse link
G Smad4 SMAD family member 4 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:9582123 PMID:10398437 PMID:11920286 PMID:15235019 PMID:16152648 More... NCBI chr18:69,518,988...69,549,684 JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO protein:increased phosphorylating activity:colon mucosa RGD PMID:2436227 RGD:150521541 NCBI chr 3:166,511,616...166,559,463 JBrowse link
G Stk11 serine/threonine kinase 11 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:14623934 PMID:15121768 PMID:25186949 PMID:25741868 PMID:26467025 More... NCBI chr 7:10,225,204...10,241,965 JBrowse link
G Tgfb1 transforming growth factor, beta 1 disease_progression ISO RGD PMID:11166150 RGD:13432074 NCBI chr 1:90,324,312...90,340,627 JBrowse link
G Tgfb2 transforming growth factor, beta 2 disease_progression ISO RGD PMID:11166150 PMID:10416598 RGD:13432074, RGD:13432084 NCBI chr13:98,160,075...98,261,771 JBrowse link
G Tlr3 toll-like receptor 3 ISO protein:increased expression:colon RGD PMID:23467704 RGD:21079438 NCBI chr16:53,554,916...53,572,321 JBrowse link
G Tnfrsf17 TNF receptor superfamily member 17 ISO RGD PMID:11104810 RGD:2317311 NCBI chr10:4,808,023...4,813,857 JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A ISO protein:increased expression:serum (human) RGD PMID:1655258 RGD:5131434 NCBI chr 4:159,837,119...159,849,817 JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B ISO protein:increased expression:serum (human) RGD PMID:1655258 RGD:5131434 NCBI chr 5:157,070,642...157,104,216 JBrowse link
G Toe1 target of EGR1, exonuclease ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:18271935 PMID:25741868 PMID:28492532 NCBI chr 5:130,270,484...130,274,050 JBrowse link
G Tp53 tumor protein p53 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:1565143 PMID:1683921 PMID:1978757 PMID:2932480 PMID:7887414 More... NCBI chr10:54,798,871...54,810,300 JBrowse link
G Tyms thymidylate synthetase ISO human tumor in mouse model RGD PMID:17848948 RGD:5133430 NCBI chr 9:120,760,057...120,776,149 JBrowse link
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 ISO mRNA:increased expression:colonic mucosa (human) RGD PMID:8541345 RGD:11352739 NCBI chr16:18,952,583...18,954,780 JBrowse link
G Vegfa vascular endothelial growth factor A treatment ISO RGD PMID:18657413 RGD:15003195 NCBI chr 9:22,452,854...22,468,194 JBrowse link
colon signet ring adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Runx1 RUNX family transcription factor 1 ISO mRNA:increased expression:colon RGD PMID:29747153 RGD:126779566 NCBI chr11:45,325,778...45,560,300 JBrowse link
Colonic Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A2m alpha-2-macroglobulin ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 4:154,897,770...154,947,787 JBrowse link
G Acta2 actin alpha 2, smooth muscle ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 1:241,159,723...241,172,503 JBrowse link
G Actg2 actin gamma 2, smooth muscle ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 4:116,021,832...116,046,475 JBrowse link
G Aldh1b1 aldehyde dehydrogenase 1 family, member B1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25641190 NCBI chr 5:60,063,370...60,068,378 JBrowse link
G Alox12b arachidonate 12-lipoxygenase, 12R type ISO CTD Direct Evidence: marker/mechanism CTD PMID:30258081 NCBI chr10:53,863,060...53,874,938 JBrowse link
G Alox5 arachidonate 5-lipoxygenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:14569062 PMID:18927292 PMID:30258081 NCBI chr 4:151,203,948...151,251,126 JBrowse link
G Apc APC regulator of WNT signaling pathway IMP
ISO
CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Colonic neoplasm
CTD
ClinVar
RGD
PMID:7846077 PMID:7959691 PMID:8608549 PMID:10383901 PMID:12034317 More... RGD:1601201 NCBI chr18:26,138,382...26,196,021 JBrowse link
G ApcPirc APC, WNT signaling pathway regulator; polyposis in the rat colon IMP RGD PMID:17360473 RGD:1601201
G Ascl2 achaete-scute family bHLH transcription factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 1:198,148,999...198,151,406 JBrowse link
G Atm ATM serine/threonine kinase ISO ClinVar Annotator: match by term: Colonic neoplasm ClinVar PMID:23807571 PMID:25614872 PMID:25741868 PMID:28492532 PMID:30482293 More... NCBI chr 8:62,724,939...62,829,040 JBrowse link
G Atp7a ATPase copper transporting alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:17510416 NCBI chr  X:75,159,635...75,267,094 JBrowse link
G Axin2 axin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21188121 NCBI chr10:94,393,379...94,426,579 JBrowse link
G Bak1 BCL2-antagonist/killer 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18349538 NCBI chr20:5,102,334...5,111,615 JBrowse link
G Bap1 BRCA1 associated deubiquitinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25231345 NCBI chr16:6,453,126...6,461,952 JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:17404573 NCBI chr 1:105,076,472...105,081,906 JBrowse link
G Bcl2 BCL2, apoptosis regulator IEP
ISO
mRNA:increased expression:colon
CTD Direct Evidence: marker/mechanism
CTD
RGD
PMID:10223192 PMID:17404573 PMID:19147571 PMID:17404573 RGD:2293078 NCBI chr13:23,204,464...23,366,900 JBrowse link
G Becn1 beclin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20876807 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Birc5 baculoviral IAP repeat-containing 5 ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:16224667 PMID:19147571 NCBI chr10:103,567,369...103,580,069 JBrowse link
G Brd4 bromodomain containing 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:26752646 NCBI chr 7:11,866,997...11,946,575 JBrowse link
G C8h11orf65 similar to human chromosome 11 open reading frame 65 ISO ClinVar Annotator: match by term: Colonic neoplasm ClinVar PMID:23807571 PMID:25614872 PMID:25741868 PMID:28492532 PMID:30482293 More... NCBI chr 8:53,796,033...53,825,277 JBrowse link
G Cacna2d1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 4:19,902,324...20,330,287 JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IEP RGD PMID:7053379 RGD:10755426 NCBI chr 6:25,292,133...25,315,078 JBrowse link
G Car4 carbonic anhydrase 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr10:70,325,102...70,333,916 JBrowse link
G Casp3 caspase 3 treatment ISO RGD PMID:18366456 RGD:13209144 NCBI chr16:52,395,539...52,413,794 JBrowse link
G Cbr1 carbonyl reductase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21056497 NCBI chr11:32,860,571...32,862,981 JBrowse link
G Ccl2 C-C motif chemokine ligand 2 treatment ISO human gene in mouse model RGD PMID:16224495 RGD:8548881 NCBI chr10:67,503,077...67,504,875 JBrowse link
G Ccl20 C-C motif chemokine ligand 20 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 9:91,837,139...91,839,736 JBrowse link
G Ccl3 C-C motif chemokine ligand 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:36346222 NCBI chr10:68,948,889...68,950,439 JBrowse link
G Ccnd1 cyclin D1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18283038 PMID:19147571 PMID:21081470 PMID:21188121 NCBI chr 1:209,518,288...209,527,986 JBrowse link
G Ccnd2 cyclin D2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 4:161,653,048...161,675,422 JBrowse link
G Ccne1 cyclin E1 IEP mRNA, protein:increased expression:colon RGD PMID:14614307 RGD:2289293 NCBI chr 1:99,918,672...99,927,986 JBrowse link
G Ccnh cyclin H ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chr 2:17,570,449...17,591,078 JBrowse link
G Ccr1 C-C motif chemokine receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:36346222 NCBI chr 8:123,556,286...123,561,841 JBrowse link
G Ccr5 C-C motif chemokine receptor 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:36346222 NCBI chr 8:132,629,097...132,660,980 JBrowse link
G Cd40lg CD40 ligand ISO RGD PMID:20378141 RGD:5490978 NCBI chr  X:140,164,341...140,176,057 JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:20876807 NCBI chr20:7,150,820...7,161,373 JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A IEP mRNA, Protein:decreased expression:colon RGD PMID:12189186 RGD:1600823 NCBI chr 5:109,100,763...109,114,448 JBrowse link
G Cdx2 caudal type homeo box 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29439001 NCBI chr12:7,726,798...7,733,142 JBrowse link
G Chek2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Colonic Neoplasms ClinVar PMID:16794575 PMID:21244692 PMID:22419737 PMID:25741868 PMID:26467025 More... NCBI chr12:51,448,838...51,481,159 JBrowse link
G Ckm creatine kinase, M-type ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 1:88,189,382...88,199,717 JBrowse link
G Col18a1 collagen type XVIII alpha 1 chain severity IDA RGD PMID:16437622 RGD:1600901 NCBI chr20:11,474,104...11,582,593 JBrowse link
G Cp ceruloplasmin ISO CTD Direct Evidence: marker/mechanism CTD PMID:23792645 NCBI chr 2:104,368,336...104,427,119 JBrowse link
G Cryab crystallin, alpha B ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 8:59,989,885...59,995,532 JBrowse link
G Ctnnb1 catenin beta 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:9515794 PMID:12628520 PMID:12800193 PMID:14507667 PMID:15459021 More... NCBI chr 8:129,517,576...129,544,661 JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr14:15,989,066...15,991,263 JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16885356 NCBI chr 1:235,471,368...235,475,204 JBrowse link
G Defa5 defensin alpha 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15844706 NCBI chr16:70,342,530...70,344,854 JBrowse link
G Defal1 defensin alpha-like 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr16:70,371,492...70,372,481 JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 1:185,617,469...185,696,476 JBrowse link
G Dnmt1 DNA methyltransferase 1 treatment IDA
ISO
CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:19723570 PMID:19723570 RGD:9588972 NCBI chr 8:19,440,611...19,486,659 JBrowse link
G Dpyd dihydropyrimidine dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:18652704 NCBI chr 2:209,293,902...210,159,777 JBrowse link
G Egfr epidermal growth factor receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:14569062 PMID:25200834 NCBI chr14:95,378,626...95,551,358 JBrowse link
G Eif3i eukaryotic translation initiation factor 3, subunit I ISO CTD Direct Evidence: marker/mechanism CTD PMID:24056964 NCBI chr 5:147,219,457...147,226,910 JBrowse link
G Eomes eomesodermin ISO CTD Direct Evidence: marker/mechanism CTD PMID:27539959 NCBI chr 8:127,059,215...127,067,070 JBrowse link
G Epcam epithelial cell adhesion molecule ISO ClinVar Annotator: match by term: Colonic neoplasm ClinVar NCBI chr 6:12,633,715...12,649,678 JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11222871 NCBI chr10:83,907,491...83,931,365 JBrowse link
G F5 coagulation factor V IEP
ISO
protein:increased expression:serum
CTD Direct Evidence: marker/mechanism
CTD
RGD
PMID:25200834 PMID:25200834 RGD:10449102 NCBI chr13:79,046,657...79,116,247 JBrowse link
G Fas Fas cell surface death receptor resistance IEP protein:increased expression RGD PMID:15796164 RGD:1600355 NCBI chr 1:241,212,155...241,245,774 JBrowse link
G Fbp1 fructose-bisphosphatase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22039417 NCBI chr17:2,207,271...2,230,076 JBrowse link
G Folr1 folate receptor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:15705887 PMID:18926688 NCBI chr 1:165,631,462...165,650,430 JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:21344377 RGD:13210752 NCBI chr 6:110,852,188...110,855,054 JBrowse link
G Fzd2 frizzled class receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21188121 NCBI chr10:88,061,988...88,063,898 JBrowse link
G Gap43 growth associated protein 43 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr11:71,882,131...71,975,799 JBrowse link
G Gast gastrin ISO CTD Direct Evidence: marker/mechanism CTD PMID:3952654 NCBI chr10:85,264,832...85,269,393 JBrowse link
G Gcg glucagon ISO CTD Direct Evidence: marker/mechanism CTD PMID:22323126 NCBI chr 3:67,522,489...67,531,533 JBrowse link
G Grik2 glutamate ionotropic receptor kainate type subunit 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chr20:53,717,564...54,415,283 JBrowse link
G Gsk3b glycogen synthase kinase 3 beta treatment
disease_progression
ISO protein:increased expression:nucleus RGD PMID:23729362 PMID:23389968 RGD:13210765, RGD:13210769 NCBI chr11:76,004,502...76,154,665 JBrowse link
G Gstm5l glutathione S-transferase, mu 5-like ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 2:195,544,424...195,549,895 JBrowse link
G Gucy1a1 guanylate cyclase 1 soluble subunit alpha 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 2:167,418,615...167,482,293 JBrowse link
G Hdac2 histone deacetylase 2 ISO mRNA:increased expression:colon:
DNA:mutations:colon:
RGD PMID:23724067 PMID:16642021 RGD:9590193, RGD:9590331 NCBI chr20:42,101,815...42,126,486 JBrowse link
G Hes1 hes family bHLH transcription factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19147571 NCBI chr11:70,705,763...70,708,176 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha severity ISO RGD PMID:21812995 RGD:10395382 NCBI chr 6:98,357,788...98,405,068 JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 PMID:27816970 NCBI chr 2:185,875,609...185,903,505 JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 6:100,864,172...100,866,946 JBrowse link
G Hspb1 heat shock protein family B (small) member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr12:26,430,640...26,432,301 JBrowse link
G Icam1 intercellular adhesion molecule 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:7902311 PMID:16497620 NCBI chr 8:27,829,688...27,841,618 JBrowse link
G Id3 inhibitor of DNA binding 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 5:153,656,253...153,657,860 JBrowse link
G Ifng interferon gamma ISO CTD Direct Evidence: therapeutic CTD PMID:10866311 NCBI chr 7:55,789,180...55,793,216 JBrowse link
G Igf2 insulin-like growth factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15057734 NCBI chr 1:197,814,409...197,831,802 JBrowse link
G Igfbp1 insulin-like growth factor binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr14:86,261,277...86,266,344 JBrowse link
G Il1b interleukin 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 PMID:18987561 PMID:19028472 NCBI chr 3:137,030,200...137,036,581 JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO CTD Direct Evidence: marker/mechanism CTD PMID:18987561 NCBI chr 3:27,509,836...27,525,738 JBrowse link
G Itga7 integrin subunit alpha 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 7:1,360,125...1,388,886 JBrowse link
G Itih4 inter-alpha-trypsin inhibitor heavy chain 4 ISO
IEP
CTD Direct Evidence: marker/mechanism
protein:increased expression:serum
CTD
RGD
PMID:25200834 PMID:25200834 RGD:10449102 NCBI chr16:6,080,539...6,095,710 JBrowse link
G Jak3 Janus kinase 3 treatment IEP RGD PMID:23514809 RGD:11533940 NCBI chr16:18,418,807...18,432,515 JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:12628520 PMID:18283038 NCBI chr 5:115,009,900...115,012,993 JBrowse link
G Kcnh2 potassium voltage-gated channel subfamily H member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16086867 NCBI chr 4:11,719,357...11,751,424 JBrowse link
G Kdm1a lysine demethylase 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:25043185 NCBI chr 5:148,782,976...148,838,319 JBrowse link
G Kdm5b lysine demethylase 5B ISO CTD Direct Evidence: marker/mechanism CTD PMID:25043185 NCBI chr13:46,001,589...46,073,868 JBrowse link
G Kdr kinase insert domain receptor ISO associated with Colitis;mRNA, protein:increased expression:colon RGD PMID:21098094 RGD:5684533 NCBI chr14:32,572,031...32,615,204 JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO CTD Direct Evidence: marker/mechanism CTD PMID:10813127 PMID:12800193 PMID:12839936 PMID:17192441 PMID:18372904 More... NCBI chr 4:179,916,255...179,949,613 JBrowse link
G Lef1 lymphoid enhancer binding factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21188121 NCBI chr 2:222,340,541...222,453,931 JBrowse link
G Lep leptin ISO CTD Direct Evidence: marker/mechanism CTD PMID:17354198 NCBI chr 4:58,626,529...58,640,663 JBrowse link
G Lgr5 leucine rich repeat containing G protein coupled receptor 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21188121 NCBI chr 7:52,973,151...53,107,964 JBrowse link
G Lpl lipoprotein lipase ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr16:25,596,205...25,621,928 JBrowse link
G Lrg1 leucine-rich alpha-2-glycoprotein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25200834 NCBI chr 9:947,516...949,773 JBrowse link
G Ltf lactotransferrin ISO CTD Direct Evidence: therapeutic CTD PMID:12079509 NCBI chr 8:110,999,948...111,022,795 JBrowse link
G Macir macrophage immunometabolism regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chr 9:105,868,072...105,888,128 JBrowse link
G Maob monoamine oxidase B ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr  X:8,490,405...8,594,065 JBrowse link
G Map2k6 mitogen-activated protein kinase kinase 6 ISO CTD Direct Evidence: therapeutic CTD PMID:15037631 NCBI chr10:95,872,747...95,987,747 JBrowse link
G Mapk8 mitogen-activated protein kinase 8 treatment ISO RGD PMID:17591974 PMID:18460448 RGD:13217412, RGD:13217414 NCBI chr16:8,645,171...8,728,225 JBrowse link
G Mcm2 minichromosome maintenance complex component 2 ISO CTD Direct Evidence: therapeutic CTD PMID:23770000 NCBI chr 4:122,903,679...122,918,205 JBrowse link
G Mecom MDS1 and EVI1 complex locus ISO CTD Direct Evidence: marker/mechanism CTD PMID:23770046 NCBI chr 2:114,837,815...115,393,052 JBrowse link
G Men1 menin 1 severity IMP RGD PMID:15054094 RGD:1304318 NCBI chr 1:203,638,905...203,644,871 JBrowse link
G Mep1a meprin A subunit alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 9:17,474,634...17,504,147 JBrowse link
G Mir223 microRNA 223 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29660302 NCBI chr  X:61,141,887...61,141,996 JBrowse link
G Mir31 microRNA 31 ISO associated with inflammatory bowel disease; RNA:increased expression:colorectal mucosa (human) RGD PMID:20848542 RGD:153297753 NCBI chr 5:103,599,038...103,599,143 JBrowse link
G Mir98 microRNA 98 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27270317 NCBI chr  X:20,981,235...20,981,342 JBrowse link
G Mki67 marker of proliferation Ki-67 ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:19028472 PMID:22070864 RGD:6483523 NCBI chr 1:199,926,150...199,952,847 JBrowse link
G Mlh1 mutL homolog 1 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Colonic Neoplasms | ClinVar Annotator: match by term: Colonic neoplasm
CTD
ClinVar
PMID:7728749 PMID:8574961 PMID:8797773 PMID:9490293 PMID:11524701 More... NCBI chr 8:120,074,871...120,112,109 JBrowse link
G Mmp12 matrix metallopeptidase 12 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 8:4,581,785...4,591,687 JBrowse link
G Mmp7 matrix metallopeptidase 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 8:13,133,043...13,140,761 JBrowse link
G Mmp9 matrix metallopeptidase 9 disease_progression IEP
ISO
IDA
mRNA:increased expression:colon
CTD Direct Evidence: marker/mechanism
protein:increased expression, increased activity:large intestine mucosa
CTD
RGD
PMID:15725655 PMID:20428773 PMID:21268133 RGD:2325778, RGD:5135051 NCBI chr 3:174,103,474...174,111,434 JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease ISO DNA:deletions:intron:IVS4_delT (human)
ClinVar Annotator: match by term: Colonic neoplasm
ClinVar
RGD
PMID:23080121 PMID:23912341 PMID:25452441 PMID:25741868 PMID:26556299 More... RGD:2317740 NCBI chr 8:19,900,211...19,961,906 JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16284371 NCBI chr 5:163,748,346...163,768,141 JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chr 5:164,167,985...164,277,438 JBrowse link
G Mutyh mutY DNA glycosylase ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Colonic neoplasm
CTD
ClinVar
PMID:16890597 PMID:19394335 PMID:19732775 PMID:20618354 PMID:20628285 More... NCBI chr 5:130,274,034...130,286,149 JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor treatment IDA
ISO
CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:12189186 PMID:15059925 PMID:18283038 PMID:21081470 PMID:22641368 RGD:7240527 NCBI chr 7:95,483,105...95,488,031 JBrowse link
G Ndrg2 NDRG family member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr15:24,600,981...24,609,621 JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19028472 PMID:20715105 NCBI chr 2:226,689,745...226,805,897 JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO DNA:insertion:Cds: 3020_3021insC (human) RGD PMID:20223031 RGD:5131515 NCBI chr19:34,555,832...34,596,281 JBrowse link
G Nos2 nitric oxide synthase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16105666 PMID:21081470 NCBI chr10:64,313,335...64,349,221 JBrowse link
G Notch1 notch receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19147571 NCBI chr 3:29,676,040...29,721,613 JBrowse link
G Nox1 NADPH oxidase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20715105 NCBI chr  X:97,279,058...97,332,291 JBrowse link
G Nox4 NADPH oxidase 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20715105 NCBI chr 1:150,313,736...150,491,480 JBrowse link
G Odc1 ornithine decarboxylase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12810952 NCBI chr 6:46,058,439...46,065,148 JBrowse link
G Oxt oxytocin/neurophysin I prepropeptide ISO CTD Direct Evidence: therapeutic CTD PMID:8647655 NCBI chr 3:117,782,650...117,783,490 JBrowse link
G Parp4 poly (ADP-ribose) polymerase family, member 4 exacerbates ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:16204055 PMID:16204055 RGD:152977751 NCBI chr15:34,806,203...34,908,492 JBrowse link
G Pcna proliferating cell nuclear antigen ISO CTD Direct Evidence: marker/mechanism CTD PMID:19028472 PMID:19723570 NCBI chr 3:139,951,948...139,955,820 JBrowse link
G Pcp4 Purkinje cell protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr11:35,759,711...35,861,725 JBrowse link
G Pdcd1 programmed cell death 1 treatment ISO RGD PMID:19208793 RGD:9589070 NCBI chr 9:101,866,124...101,879,278 JBrowse link
G Pdgfrb platelet derived growth factor receptor beta ISO RGD PMID:17050049 RGD:2292176 NCBI chr18:56,770,348...56,809,228 JBrowse link
G Pecam1 platelet and endothelial cell adhesion molecule 1 ISO RGD PMID:22832932 RGD:6771355 NCBI chr10:92,090,263...92,152,002 JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO RGD PMID:16847462 RGD:2290476 NCBI chr 2:34,612,946...34,697,660 JBrowse link
G Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 ISO RGD PMID:22733740 RGD:13432042 NCBI chr16:18,699,389...18,708,045 JBrowse link
G Plau plasminogen activator, urokinase treatment ISO protein:increased expression:colon, mucosa (human)
human tumor cell line in mouse model
RGD PMID:3884145 PMID:19214512 RGD:7241262, RGD:7241805 NCBI chr15:3,505,485...3,511,987 JBrowse link
G Plcb1 phospholipase C beta 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 3:122,059,988...122,772,896 JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO RGD PMID:10763829 RGD:1599141 NCBI chr12:10,676,818...10,701,161 JBrowse link
G Polb DNA polymerase beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:25030372 NCBI chr16:69,379,438...69,402,710 JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma ISO CTD Direct Evidence: therapeutic CTD PMID:20540935 NCBI chr 4:150,095,743...150,221,104 JBrowse link
G Prf1 perforin 1 ISO associated with Colitis RGD PMID:19785028 RGD:6482812 NCBI chr20:29,246,202...29,251,712 JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO CTD Direct Evidence: marker/mechanism CTD PMID:19946270 NCBI chr 1:51,236,410...52,430,242 JBrowse link
G Prom1 prominin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21188121 NCBI chr14:71,202,303...71,307,008 JBrowse link
G Ptger3 prostaglandin E receptor 3 severity ISO RGD PMID:15247185 RGD:9850265 NCBI chr 2:246,606,131...246,750,970 JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 IMP
ISO
CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:12189188 PMID:17667525 PMID:21081470 PMID:21268133 RGD:5135051 NCBI chr13:64,714,063...64,722,320 JBrowse link
G Ptp4a3 protein tyrosine phosphatase 4A3 ISO CTD Direct Evidence: therapeutic CTD PMID:23555575 NCBI chr 7:105,650,640...105,660,921 JBrowse link
G RatNP-3b defensin RatNP-3 precursor EXP CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr16:70,544,364...70,546,533 JBrowse link
G Rcor1 REST corepressor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25043185 NCBI chr 6:135,890,851...135,967,367 JBrowse link
G Reck reversion-inducing-cysteine-rich protein with kazal motifs ISO CTD Direct Evidence: marker/mechanism CTD PMID:17443689 NCBI chr 5:58,102,961...58,169,516 JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:20715105 NCBI chr 1:212,354,336...212,364,815 JBrowse link
G Rfc1 replication factor C subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18926688 NCBI chr14:43,319,768...43,395,028 JBrowse link
G Rhoj ras homolog family member J ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 6:94,035,307...94,117,642 JBrowse link
G Rnf34 ring finger protein 34 ISO CTD Direct Evidence: therapeutic CTD PMID:16270526 NCBI chr12:39,364,461...39,385,391 JBrowse link
G Runx3 RUNX family transcription factor 3 ISO DNA:hypermethylation:promoter RGD PMID:15386381 RGD:2302551 NCBI chr 5:152,644,270...152,702,835 JBrowse link
G S100a4 S100 calcium-binding protein A4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21685359 NCBI chr 2:178,388,529...178,390,838 JBrowse link
G S100a9 S100 calcium binding protein A9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 2:178,487,941...178,490,622 JBrowse link
G Serpinb5 serpin family B member 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr13:23,500,203...23,520,401 JBrowse link
G Sertad1 SERTA domain containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18097604 NCBI chr 1:82,775,692...82,778,961 JBrowse link
G Sh3kbp1 SH3 domain-containing kinase-binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr  X:38,686,530...39,031,658 JBrowse link
G Slc16a1 solute carrier family 16 member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11953883 NCBI chr 2:194,805,556...194,832,966 JBrowse link
G Slc19a1 solute carrier family 19 member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15705887 NCBI chr20:11,584,410...11,602,429 JBrowse link
G Slc22a1 solute carrier family 22 member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 1:50,624,339...50,651,437 JBrowse link
G Slc2a1 solute carrier family 2 member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11953883 NCBI chr 5:138,002,522...138,030,742 JBrowse link
G Slc5a8 solute carrier family 5 member 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15090606 PMID:16670197 NCBI chr 7:23,272,891...23,313,811 JBrowse link
G Slco1b2 solute carrier organic anion transporter family member 1B2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22326869 PMID:25625007 NCBI chr 4:176,282,577...176,355,557 JBrowse link
G Sod2 superoxide dismutase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25279216 NCBI chr 1:50,043,323...50,050,168 JBrowse link
G Sparc secreted protein acidic and cysteine rich ISO CTD Direct Evidence: marker/mechanism CTD PMID:17397030 NCBI chr10:39,516,394...39,538,252 JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:14569062 NCBI chr 3:166,511,616...166,559,463 JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19028472 NCBI chr10:86,311,528...86,363,513 JBrowse link
G Sult1a1 sulfotransferase family 1A member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 1:190,702,592...190,706,112 JBrowse link
G Tagln transgelin ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr 8:55,121,647...55,127,121 JBrowse link
G Tcf19 transcription factor 19 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chr20:3,223,464...3,227,569 JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21383188 NCBI chr 1:264,791,335...264,984,225 JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:7761852 NCBI chr 8:124,672,677...124,761,741 JBrowse link
G Tnf tumor necrosis factor ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:12842827 PMID:19028472 NCBI chr20:3,626,685...3,629,303 JBrowse link
G Tnfrsf10b TNF receptor superfamily member 10b ISO CTD Direct Evidence: marker/mechanism CTD PMID:17075118 NCBI chr15:51,249,883...51,278,091 JBrowse link
G Tnfrsf9 TNF receptor superfamily member 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25279216 NCBI chr 5:166,664,494...166,690,834 JBrowse link
G Tnfsf10 TNF superfamily member 10 ISO CTD Direct Evidence: therapeutic CTD PMID:15993848 NCBI chr 2:112,136,550...112,155,903 JBrowse link
G Tp53 tumor protein p53 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Colonic neoplasm
CTD
ClinVar
PMID:12826609 PMID:17075118 PMID:17192441 PMID:20978130 PMID:24549055 More... NCBI chr10:54,798,871...54,810,300 JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chr 3:108,166,574...108,270,229 JBrowse link
G Tpm3 tropomyosin 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19369484 NCBI chr 2:177,812,534...177,842,661 JBrowse link
G Trmt11 tRNA methyltransferase 11 homolog ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chr 1:27,054,437...27,109,765 JBrowse link
G Tymp thymidine phosphorylase ISO CTD Direct Evidence: marker/mechanism CTD PMID:18652704 NCBI chr 7:122,318,396...122,323,716 JBrowse link
G Tyms thymidylate synthetase ISO CTD Direct Evidence: marker/mechanism CTD PMID:15355913 PMID:16284371 PMID:16609021 PMID:18192902 PMID:18652704 More... NCBI chr 9:120,760,057...120,776,149 JBrowse link
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 treatment ISO RGD PMID:20442318 RGD:9587430 NCBI chr 9:1,220,162...1,241,792 JBrowse link
G Umps uridine monophosphate synthetase ISO CTD Direct Evidence: marker/mechanism CTD PMID:18652704 NCBI chr11:66,806,107...66,816,520 JBrowse link
G Usp39 ubiquitin specific peptidase 39 ISO CTD Direct Evidence: marker/mechanism CTD PMID:34822033 NCBI chr 4:104,373,948...104,406,359 JBrowse link
G Vegfa vascular endothelial growth factor A ISO associated with Colitis
CTD Direct Evidence: marker/mechanism
CTD
RGD
PMID:18987561 PMID:21098094 RGD:5684533 NCBI chr 9:22,452,854...22,468,194 JBrowse link
G Wt1 WT1 transcription factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:14961577 NCBI chr 3:112,019,721...112,068,454 JBrowse link
G Xaf1 XIAP associated factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15843754 PMID:17087954 NCBI chr10:56,917,378...56,929,791 JBrowse link
G Xdh xanthine dehydrogenase IEP RGD PMID:3163916 RGD:13210519 NCBI chr 6:21,530,463...21,592,172 JBrowse link
G Ybx1 Y box binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28077578 NCBI chr 5:138,167,444...138,188,155 JBrowse link
colorectal adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP binding cassette subfamily B member 1A susceptibility ISO DNA:polymorphism: :3435C>T (human) RGD PMID:16107775 RGD:2312343 NCBI chr 4:26,312,403...26,488,456 JBrowse link
G Abcb1b ATP-binding cassette, sub-family B member 1B IDA RGD PMID:16619498 RGD:1598563 NCBI chr 4:26,197,706...26,280,156 JBrowse link
G Arpc2 actin related protein 2/3 complex, subunit 2 ISO mRNA:decreased expression:colonic mucosa (human) RGD PMID:25107436 RGD:11049173 NCBI chr 9:83,269,884...83,300,610 JBrowse link
G Bcl2l1 Bcl2-like 1 ISO protein:increased expression:colonic mucosa (human) RGD PMID:8625322 RGD:11353854 NCBI chr 3:161,713,777...161,764,844 JBrowse link
G Bcl2l2 Bcl2-like 2 disease_progression ISO RGD PMID:10638987 RGD:14394422 NCBI chr15:28,346,449...28,361,627 JBrowse link
G Birc7 baculoviral IAP repeat-containing 7 ISO RGD PMID:21122381 RGD:13217408 NCBI chr 3:188,425,392...188,430,174 JBrowse link
G Borcs5 BLOC-1 related complex subunit 5 susceptibility ISO DNA:SNP:3'utr: (rs3803098) A>G (human) RGD PMID:27354594 RGD:152177496 NCBI chr 4:167,458,640...167,543,556 JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase disease_progression ISO RGD PMID:24500602 RGD:11567230 NCBI chr 4:69,329,772...69,476,931 JBrowse link
G Brd8 bromodomain containing 8 disease_progression IEP RGD PMID:19787264 RGD:9587763 NCBI chr18:26,455,824...26,504,106 JBrowse link
G Car12 carbonic anhydrase 12 severity ISO RGD PMID:10666387 RGD:155226866 NCBI chr 8:67,274,739...67,330,428 JBrowse link
G Ccdc17 coiled-coil domain containing 17 susceptibility ISO DNA:SNP:3'utr: (rs2275085) T>C (human) RGD PMID:27354594 RGD:152177496 NCBI chr 5:130,051,158...130,056,676 JBrowse link
G Cd44 CD44 molecule disease_progression ISO mRNA, protein:splice variant, increased expression:large intestine RGD PMID:16425351 RGD:2289356 NCBI chr 3:109,610,824...109,699,776 JBrowse link
G Cyp24a1 cytochrome P450, family 24, subfamily a, polypeptide 1 susceptibility ISO DNA:SNPs:enhancers: (rs6013897, rs158552, rs17217119) (human) RGD PMID:28009432 RGD:151665179 NCBI chr 3:179,694,647...179,709,083 JBrowse link
G Cyp4f6 cytochrome P450, family 4, subfamily f, polypeptide 6 susceptibility ISO DNA:SNP:3'utr: (rs2283606) T>C (human) RGD PMID:27354594 RGD:152177496 NCBI chr 7:12,030,276...12,058,020 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta susceptibility ISO DNA:SNP: : 39179G>T(human) RGD PMID:19626461 RGD:9589082 NCBI chr 3:142,130,588...142,169,128 JBrowse link
G Dok3 docking protein 3 susceptibility ISO DNA:SNP:3'utr: (rs2279398) (human) RGD PMID:27354594 RGD:152177496 NCBI chr17:9,109,633...9,115,188 JBrowse link
G Emx2 empty spiracles homeobox 2 exacerbates ISO mRNA:decreased expression:colorectal mucosa (human) RGD PMID:28830374 RGD:153323301 NCBI chr 1:258,626,584...258,633,594 JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 severity ISO RGD PMID:16507107 RGD:126781766 NCBI chr 7:1,579,079...1,600,379 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO mRNA:decreased expression:colorectum (human) RGD PMID:22966016 RGD:155598682 NCBI chr16:7,771,311...7,841,895 JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit disease_progression ISO DNA:SNP: rs3757441 (human) RGD PMID:21926398 RGD:126779594 NCBI chr 4:76,624,399...76,687,362 JBrowse link
G Fam151a family with sequence similarity 151, member A susceptibility ISO DNA:SNP:3'utr: (rs11206394) G>C (human) RGD PMID:27354594 RGD:152177496 NCBI chr 5:121,514,804...121,527,555 JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 treatment ISO human cell line in a mouse model RGD PMID:31255687 RGD:155663557 NCBI chr 1:194,175,703...194,280,914 JBrowse link
G Flt3 Fms related receptor tyrosine kinase 3 severity ISO DNA:polymorphisms:multiple RGD PMID:33075166 RGD:149735513 NCBI chr12:12,660,035...12,735,584 JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:8264230 RGD:13210753 NCBI chr 6:110,852,188...110,855,054 JBrowse link
G Gata6 GATA binding protein 6 severity ISO human cells in a mouse model RGD PMID:24452072 RGD:13208874 NCBI chr18:2,460,909...2,492,322 JBrowse link
G Gjb3 gap junction protein, beta 3 susceptibility ISO DNA:SNP:3'utr: (rs9118) C>G (human) RGD PMID:27354594 RGD:152177496 NCBI chr 5:139,649,227...139,654,970 JBrowse link
G Gpx4 glutathione peroxidase 4 susceptibility ISO DNA:SNP:3' utr:c.718T>C (human) RGD PMID:18850177 RGD:152998895 NCBI chr 7:10,300,833...10,303,629 JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD PMID:21609933 RGD:13210767 NCBI chr11:76,004,502...76,154,665 JBrowse link
G Gstm1 glutathione S-transferase mu 1 ISO RGD PMID:12421502 RGD:14700996 NCBI chr 2:198,338,005...198,346,007 JBrowse link
G Gstt1 glutathione S-transferase theta 1 onset ISO RGD PMID:12421502 PMID:12682546 RGD:14700996, RGD:14701003 NCBI chr20:12,856,068...12,873,020 JBrowse link
G Hpca hippocalcin severity ISO mRNA, protein:increased expression:colon carcinoma (human) RGD PMID:22696308 RGD:9693683 NCBI chr 5:141,455,616...141,466,252 JBrowse link
G Ier2 immediate early response 2 disease_progression ISO protein:increased expression:colon (human) RGD PMID:22120713 RGD:153323322 NCBI chr19:23,494,551...23,496,075 JBrowse link
G Il16 interleukin 16 susceptibility ISO DNA:SNP:3'utr: (rs1131445) T>C (human) RGD PMID:27354594 RGD:152177496 NCBI chr 1:137,617,702...137,718,022 JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:8264230 RGD:13210753 NCBI chr 5:115,009,900...115,012,993 JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit ISO protein:increased expression:colorectal mucosa (human) RGD PMID:10874008 RGD:151347670 NCBI chr19:23,176,265...23,178,049 JBrowse link
G Kcnh1 potassium voltage-gated channel subfamily H member 1 severity ISO DNA:amplification: (human) RGD PMID:17289873 RGD:9693694 NCBI chr13:103,722,140...104,024,762 JBrowse link
G Kdr kinase insert domain receptor treatment
severity
ISO protein:altered phosphorylation:colon RGD PMID:26325365 PMID:25372416 RGD:11529678, RGD:126848811 NCBI chr14:32,572,031...32,615,204 JBrowse link
G Kmt2b lysine methyltransferase 2B ISO human gene in a mouse model RGD PMID:22713656 RGD:9588601 NCBI chr 1:85,821,700...85,840,987 JBrowse link
G Mapk1 mitogen activated protein kinase 1 treatment