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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:Penetrating Wounds
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Accession:DOID:9000656 term browser browse the term
Definition:Wounds caused by objects penetrating the skin.
Synonyms:exact_synonym: Penetrating Wound
 primary_id: MESH:D014950


show annotations for term's descendants           Sort by:
Penetrating Wounds term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C3 complement C3 treatment ISO RGD PMID:22007700 RGD:11040781 NCBI chr 9:2,087,437...2,114,366
Ensembl chr 9:2,087,437...2,114,429 		JBrowse link
G Cd36 CD36 molecule ISO associated with Diabetes Mellitus, Type 2;mRNA:decreased expression:macrophage RGD PMID:21803601 RGD:6893492 NCBI chr 4:17,317,343...17,410,084
Ensembl chr 4:17,354,466...17,513,903 		JBrowse link
G Cd40lg CD40 ligand treatment IDA RGD PMID:25153915 RGD:11352274 NCBI chr  X:135,127,052...135,138,768
Ensembl chr  X:135,126,969...135,138,306 		JBrowse link
G Cxcl12 C-X-C motif chemokine ligand 12 ISO associated with Diabetes Mellitus RGD PMID:17950070 RGD:2306556 NCBI chr 4:150,388,326...150,401,173
Ensembl chr 4:150,388,325...150,401,168 		JBrowse link
G Epo erythropoietin treatment ISO associated with Diabetes Mellitus, Experimental RGD PMID:21326299 RGD:10401063 NCBI chr12:19,204,258...19,207,948
Ensembl chr12:19,204,508...19,207,946 		JBrowse link
G Fgf10 fibroblast growth factor 10 treatment ISO human protein in rat model RGD PMID:10417753 RGD:126928129 NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Hgf hepatocyte growth factor ISO CTD Direct Evidence: therapeutic CTD PMID:12890377 NCBI chr 4:18,673,736...18,745,582
Ensembl chr 4:18,677,101...18,745,409 		JBrowse link
G Icam1 intercellular adhesion molecule 1 IEP mRNA:increased expression:granulation tissue (rat) RGD PMID:20638379 RGD:4145377 NCBI chr 8:19,553,063...19,565,438
Ensembl chr 8:19,553,645...19,565,438 		JBrowse link
G Il10 interleukin 10 IDA associated with Diabetes Mellitus, Experimental RGD PMID:26101070 RGD:11049529 NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313 		JBrowse link
G Mmp3 matrix metallopeptidase 3 IEP associated with Diabetes Mellitus, Type 2 RGD PMID:21649785 RGD:8694117 NCBI chr 8:4,640,397...4,653,963
Ensembl chr 8:4,640,416...4,653,961 		JBrowse link
G Pecam1 platelet and endothelial cell adhesion molecule 1 ISO RGD PMID:22092840 PMID:22615899 RGD:6771175, RGD:6771227 NCBI chr10:91,590,521...91,652,279
Ensembl chr10:91,590,521...91,652,116 		JBrowse link
G Pgf placental growth factor ISO RGD PMID:17194893 RGD:6483614 NCBI chr 6:104,816,102...104,826,685
Ensembl chr 6:104,816,104...104,826,685 		JBrowse link
G Serpine1 serpin family E member 1 IEP mRNA:increased expression:dorsal skin (rat) RGD PMID:25794881 RGD:11075080 NCBI chr12:19,601,272...19,611,657
Ensembl chr12:19,601,272...19,611,657 		JBrowse link
G Slpi secretory leukocyte peptidase inhibitor IEP RGD PMID:22020578 RGD:9999424 NCBI chr 3:153,082,208...153,084,457
Ensembl chr 3:153,082,369...153,084,453 		JBrowse link
G Tnf tumor necrosis factor IEP associated with Diabetes Mellitus, Experimental RGD PMID:26101070 RGD:11049529 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629 		JBrowse link
G Xdh xanthine dehydrogenase treatment IEP RGD PMID:8121173 RGD:13209015 NCBI chr 6:21,530,463...21,592,172
Ensembl chr 6:21,530,113...21,592,268 		JBrowse link
Penetrating Eye Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 ISO mRNA:increased expression:retina RGD PMID:9268592 RGD:8655567 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Neo1 neogenin 1 IEP protein:increased expression:retina RGD PMID:21887516 RGD:9850142 NCBI chr 8:59,273,860...59,426,486
Ensembl chr 8:59,275,569...59,430,348 		JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a IEP protein:increased expression:retina RGD PMID:21887516 RGD:9850142 NCBI chr 1:127,128,934...127,172,918
Ensembl chr 1:127,128,934...127,172,918 		JBrowse link
Penetrating Head Injuries term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 IEP protein:increased expression,increased activity:cerebral cortex: RGD PMID:16672190 RGD:9685448 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 IEP mRNA,protein:increased expression:astrocyte,macrophage,neutrophil: RGD PMID:11168551 RGD:10402049 NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Gfap glial fibrillary acidic protein ISO RGD PMID:10225952 RGD:6480471 NCBI chr10:87,852,891...87,861,631
Ensembl chr10:87,852,890...87,861,589 		JBrowse link
G Pdgfb platelet derived growth factor subunit B IEP protein:increased expression:neuron: RGD PMID:7526956 RGD:10449485 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Vim vimentin ISO RGD PMID:10225952 RGD:6480471 NCBI chr17:76,668,701...76,677,186
Ensembl chr17:76,668,647...76,677,187 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19137
    Wounds and Injuries 994
      Penetrating Wounds 24
        Corpse Dismemberment 0
        Decapitation 0
        Gunshot Wounds 0
        Penetrating Eye Injuries 3
        Penetrating Head Injuries 5
        Stab Wounds + 0
paths to the root