RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
G
Ace
angiotensin I converting enzyme
susceptibility
ISO
DNA:insertion/deletion:intron 16:
RGD
PMID:14765837
RGD:40400724
NCBI chr10:90,910,316...90,930,437
Ensembl chr10:90,910,316...90,931,131
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Ift88
intraflagellar transport 88
ISS
MouseDO
NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
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Mthfr
methylenetetrahydrofolate reductase
susceptibility
ISO
associated with rheumatic heart disease;DNA:SNP:cds:677C>T (human)
RGD
PMID:26813460
RGD:11537145
NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797
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Map3k7
mitogen activated protein kinase kinase kinase 7
ISO
CTD Direct Evidence: marker/mechanism
CTD
NCBI chr 5:46,356,973...46,415,597
Ensembl chr 5:46,357,931...46,415,597
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Sh3pxd2b
SH3 and PX domains 2B
ISO
CTD Direct Evidence: marker/mechanism ClinVar Annotator: match by term: BORRONE DERMATOCARDIOSKELETAL SYNDROME | ClinVar Annotator: match by term: Frank-Ter Haar syndrome | ClinVar Annotator: match by term: Megalocornea, multiple skeletal anomalies, and developmental delay
OMIM CTD ClinVar
PMID:7158646 PMID:8484415 PMID:15523657 PMID:20137777 PMID:22509100 PMID:23140272 PMID:24105366 PMID:25741868 PMID:28492532 PMID:29276006 PMID:31931872 PMID:31978614 More...
NCBI chr10:16,918,611...17,027,499
Ensembl chr10:16,918,679...17,005,170
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Col2a1
collagen type II alpha 1 chain
ISO
ClinVar Annotator: match by term: MASS syndrome
ClinVar
PMID:25741868 PMID:28492532 PMID:35296718
NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546
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Fbn1
fibrillin 1
ISO
ClinVar Annotator: match by term: MASS syndrome | ClinVar Annotator: match by term: Overlap connective tissue disease CTD Direct Evidence: marker/mechanism
OMIM ClinVar CTD
PMID:627879 PMID:948948 PMID:1569206 PMID:2005308 PMID:2254511 PMID:2739055 PMID:3212331 PMID:3495735 PMID:4750422 PMID:7802039 PMID:7870075 PMID:8004112 PMID:8040326 PMID:8541880 PMID:8653794 PMID:8723076 PMID:8791520 PMID:9338581 PMID:9399842 PMID:9401003 PMID:9452085 PMID:9536098 PMID:9837823 PMID:10464652 PMID:10486319 PMID:10533071 PMID:10612827 PMID:10633129 PMID:11068200 PMID:11139245 PMID:11143906 PMID:11175294 PMID:11315929 PMID:11524736 PMID:11700157 PMID:11702223 PMID:11748851 PMID:11826022 PMID:11933199 PMID:11992479 PMID:12068374 PMID:12161601 PMID:12203987 PMID:12203992 PMID:12402346 PMID:12446365 PMID:12938084 PMID:14695540 PMID:15054843 PMID:15062093 PMID:15161917 PMID:15241795 PMID:15880509 PMID:15980072 PMID:15983637 PMID:16199547 PMID:16220557 PMID:16222657 PMID:16342915 PMID:16571647 PMID:16677079 PMID:16756980 PMID:16765689 PMID:16835936 PMID:16905551 PMID:16971892 PMID:17242066 PMID:17253931 PMID:17418587 PMID:17503327 PMID:17576681 PMID:17627385 PMID:17657824 PMID:17663468 PMID:17679947 PMID:17701892 PMID:17718856 PMID:18079676 PMID:18087243 PMID:18435798 PMID:18615205 PMID:19012347 PMID:19059503 PMID:19089573 PMID:19159394 PMID:19161152 PMID:19293843 PMID:19328768 PMID:19349279 PMID:19353630 PMID:19370756 PMID:19533785 PMID:19618372 PMID:19780835 PMID:19802897 PMID:19839986 PMID:19863550 PMID:19941982 PMID:20301510 PMID:20375004 PMID:20564469 PMID:20699357 PMID:20886638 PMID:21542060 PMID:21784848 PMID:21883168 PMID:21895641 PMID:21907952 PMID:21932315 PMID:22772377 PMID:22950452 PMID:23278365 PMID:23506379 PMID:23577066 PMID:23608731 PMID:23684891 PMID:23719250 PMID:23794388 PMID:24033266 PMID:24161884 PMID:24199744 PMID:24793577 PMID:24833718 PMID:24941995 PMID:25053872 PMID:25101912 PMID:25326635 PMID:25363768 PMID:25504618 PMID:25637381 PMID:25644172 PMID:25652356 PMID:25741868 PMID:25812041 PMID:25852444 PMID:25900864 PMID:25907466 PMID:25944730 PMID:26133393 PMID:26188975 PMID:26214305 PMID:26269718 PMID:26272055 PMID:26272908 PMID:26333736 PMID:26498160 PMID:26559152 PMID:26621581 PMID:26787436 PMID:26875674 PMID:27058611 PMID:27106435 PMID:27112580 PMID:27146836 PMID:27153395 PMID:27234404 PMID:27274304 PMID:27353645 PMID:27437668 PMID:27582083 PMID:27611364 PMID:27647783 PMID:27724990 PMID:27906200 PMID:27930701 PMID:27959697 PMID:28050602 PMID:28087566 PMID:28098115 PMID:28301460 PMID:28468757 PMID:28492532 PMID:28539832 PMID:28550590 PMID:28636274 PMID:28642162 PMID:28650953 PMID:28655553 PMID:28659821 PMID:28847661 PMID:28855619 PMID:28901506 PMID:28941062 PMID:28973303 PMID:29357934 PMID:29510914 PMID:29543232 PMID:29768367 PMID:29845260 PMID:29848614 PMID:29875124 PMID:29907982 PMID:30048161 PMID:30056620 PMID:30057829 PMID:30086531 PMID:30341550 PMID:30471092 PMID:30513137 PMID:30542390 PMID:30653986 PMID:30675029 PMID:30739908 PMID:30796334 PMID:30838813 PMID:31008308 PMID:31020005 PMID:31098894 PMID:31163209 PMID:31167969 PMID:31211624 PMID:31211626 PMID:31227806 PMID:31605817 PMID:31727422 PMID:31730815 PMID:31751304 PMID:31774634 PMID:31825148 PMID:31903434 PMID:31950671 PMID:32009526 PMID:32123317 PMID:32679894 PMID:32730690 PMID:32939518 PMID:33100332 PMID:33243733 PMID:33282382 PMID:33436942 PMID:33483584 PMID:33824467 PMID:34008892 PMID:34135346 PMID:34281902 PMID:34422331 PMID:34456093 PMID:34498425 PMID:34653508 PMID:34818515 PMID:35234813 PMID:35877578 PMID:36973604 PMID:37042257 PMID:37460677 PMID:37684520 More...
NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889
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Map3k7
mitogen activated protein kinase kinase kinase 7
ISO
DNA:missense mutations, deletions:CDS:multiple (human) ClinVar Annotator: match by term: Cardiospondylocarpofacial syndrome
OMIM ClinVar RGD
PMID:20186786 PMID:25741868 PMID:27426733 PMID:27426734 PMID:28492532 PMID:29467388 PMID:32105826 PMID:27426734 More...
RGD:11552967
NCBI chr 5:46,356,973...46,415,597
Ensembl chr 5:46,357,931...46,415,597
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Aloxe3
arachidonate epidermal lipoxygenase 3
ISO
ClinVar Annotator: match by term: Mitral regurgitation
ClinVar
PMID:25741868
NCBI chr10:53,830,219...53,854,328
Ensembl chr10:53,831,264...53,854,328
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Fbn1
fibrillin 1
ISO
ClinVar Annotator: match by term: Mitral regurgitation
ClinVar
PMID:16571647 PMID:16905551 PMID:17657824 PMID:17701892 PMID:19349279 PMID:25741868 PMID:28468757 PMID:28492532 PMID:33844962 More...
NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889
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Hes7
hes family bHLH transcription factor 7
ISO
ClinVar Annotator: match by term: Mitral regurgitation
ClinVar
PMID:25741868
NCBI chr10:53,824,124...53,828,934
Ensembl chr10:53,825,574...53,828,097
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Lmcd1
LIM and cysteine-rich domains 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:26301497
NCBI chr 4:145,393,153...145,452,049
Ensembl chr 4:145,393,145...145,452,046
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Ace
angiotensin I converting enzyme
severity
ISO
associated with Marfan Syndrome;DNA:polymorphism,haplotype:
GAD RGD
PMID:15118671 PMID:17379330
RGD:1331525 , RGD:13432357
NCBI chr10:90,910,316...90,930,437
Ensembl chr10:90,910,316...90,931,131
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Agt
angiotensinogen
severity
ISO
associated with Marfan Syndrome;DNA:haplotype:cds: p.M235T(human)
GAD RGD
PMID:15118671 PMID:17379330
RGD:1331525 , RGD:13432357
NCBI chr19:52,529,139...52,549,618
Ensembl chr19:52,529,185...52,540,977
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Dchs1
dachsous cadherin-related 1
ISS
OMIM:157700 | OMIM:607829 | OMIM:610840
MouseDO
NCBI chr 1:160,104,931...160,138,958
Ensembl chr 1:160,104,931...160,124,808
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Des
desmin
ISO
protein:altered expression:;eft ventricule
RGD
PMID:27464577
RGD:13542088
NCBI chr 9:76,850,979...76,858,695
Ensembl chr 9:76,850,982...76,858,699
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Dzip1
DAZ interacting zinc finger protein 1
ISS
OMIM:157700 | OMIM:607829 | OMIM:610840
MouseDO
NCBI chr15:95,956,329...96,009,994
Ensembl chr15:95,956,398...96,010,066
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Fbn1
fibrillin 1
ISO
ClinVar Annotator: match by term: Mitral valve prolapse
ClinVar RGD
PMID:25741868 PMID:12918850
RGD:1580379
NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889
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Flna
filamin A
ISO
DNA:missense mutation:cds:p.G288R (human)
RGD
PMID:24243761
RGD:11565119
NCBI chr X:152,007,758...152,034,266
Ensembl chr X:152,007,758...152,031,052
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Lmcd1
LIM and cysteine-rich domains 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:26301497
NCBI chr 4:145,393,153...145,452,049
Ensembl chr 4:145,393,145...145,452,046
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Ltbp3
latent transforming growth factor beta binding protein 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25899461
NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975
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Map2k2
mitogen activated protein kinase kinase 2
ISO
ClinVar Annotator: match by term: Mitral valve prolapse
ClinVar
PMID:25741868 PMID:28492532
NCBI chr 7:8,590,729...8,610,279
Ensembl chr 7:8,580,905...8,610,243
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Pacs1
phosphofurin acidic cluster sorting protein 1
ISO
ClinVar Annotator: match by term: Mitral valve prolapse
ClinVar
PMID:23159249 PMID:25326635 PMID:25356970 PMID:25522177 PMID:25533962 PMID:25741868 PMID:25741881 PMID:26795593 PMID:26842493 PMID:26944241 PMID:27681385 PMID:28111752 PMID:28135719 PMID:28471432 PMID:28492532 PMID:28554332 PMID:28628100 PMID:28975623 PMID:29550517 PMID:30113927 PMID:30588754 PMID:30690871 PMID:32963807 PMID:34068396 More...
NCBI chr 1:202,437,503...202,569,473
Ensembl chr 1:202,437,505...202,569,473
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Plau
plasminogen activator, urokinase
ISO
RGD
PMID:15262029
RGD:1580896
NCBI chr15:3,456,230...3,462,732
Ensembl chr15:3,456,232...3,462,775
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RT1-CE13
RT1 class I, locus CE13
ISO
associated with Graves Disease; DNA:polymorphisms:cds:HLA-B15 (human)
RGD
PMID:8894996
RGD:7365110
NCBI chr20:3,314,830...3,318,106
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Slc39a13
solute carrier family 39 member 13
ISO
ClinVar Annotator: match by term: Mitral valve prolapse
ClinVar
PMID:25741868 PMID:28492532
NCBI chr 3:77,039,411...77,047,528
Ensembl chr 3:77,037,565...77,049,226
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Tshr
thyroid stimulating hormone receptor
ISO
RGD
PMID:10199795
RGD:1580775
NCBI chr 6:110,341,585...110,475,297
Ensembl chr 6:110,341,581...110,474,538
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Ttn
titin
ISO
ClinVar Annotator: match by term: Mitral valve prolapse
ClinVar
PMID:22335739 PMID:23975875 PMID:25589632 PMID:25741868 PMID:28492532 PMID:35653365 PMID:36264615 More...
NCBI chr 3:61,652,432...61,924,912
Ensembl chr 3:61,652,439...61,924,741
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Il10
interleukin 10
ISO
RGD
PMID:16155388
RGD:1598624
NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313
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Dchs1
dachsous cadherin-related 1
ISO
ClinVar Annotator: match by term: DCHS1-related disorder | ClinVar Annotator: match by term: Mitral valve prolapse, myxomatous 2 CTD Direct Evidence: marker/mechanism
OMIM ClinVar CTD
PMID:9536098 PMID:12707861 PMID:17576681 PMID:25741868 PMID:26258302 PMID:28492532 PMID:28518168 PMID:32461654 More...
NCBI chr 1:160,104,931...160,138,958
Ensembl chr 1:160,104,931...160,124,808
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Dzip1
DAZ interacting zinc finger protein 1
ISO
ClinVar Annotator: match by term: Mitral valve prolapse, myxomatous 3 CTD Direct Evidence: marker/mechanism
OMIM ClinVar CTD
PMID:31118289
NCBI chr15:95,956,329...96,009,994
Ensembl chr15:95,956,398...96,010,066
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Notch1
notch receptor 1
ISO
ClinVar Annotator: match by term: Shone complex
ClinVar
PMID:28492532
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
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Atm
ATM serine/threonine kinase
ISO
ClinVar Annotator: match by term: Cardiac valvular dysplasia, X-linked
ClinVar
PMID:10330348 PMID:12815592 PMID:19691550 PMID:21665257 PMID:23807571 PMID:25614872 PMID:25741868 PMID:28492532 More...
NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
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Flna
filamin A
ISO
ClinVar Annotator: match by term: Cardiac valvular dysplasia, X-linked | ClinVar Annotator: match by term: Myxomatous valvular dystrophy, X-linked CTD Direct Evidence: marker/mechanism DNA:missense mutations, deletion:cds, exons, introns:multiple (human)
OMIM ClinVar CTD RGD
PMID:240645 PMID:1854572 PMID:8230166 PMID:9497244 PMID:9536098 PMID:10982489 PMID:12612583 PMID:16299064 PMID:16417552 PMID:16822260 PMID:16875750 PMID:17190868 PMID:17576681 PMID:17632775 PMID:18414213 PMID:19006219 PMID:20301567 PMID:22522697 PMID:24088041 PMID:25741868 PMID:26467025 PMID:26471271 PMID:26633545 PMID:26686323 PMID:26804200 PMID:27739212 PMID:28492532 PMID:29168297 PMID:29237676 PMID:30089473 PMID:30712057 PMID:30986657 PMID:32738303 PMID:35000503 PMID:17190868 More...
RGD:11565121
NCBI chr X:152,007,758...152,034,266
Ensembl chr X:152,007,758...152,031,052
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