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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:testicular germ cell cancer
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Accession:DOID:5557 term browser browse the term
Definition:A testicular cancer that has_material_basis_in germ cells. (DO)
Synonyms:exact_synonym: germ cell tumor of testis
 related_synonym: testicular germ cell neoplasm
 xref: EFO:0004281;   EFO:1000566;   NCI:C8591;   ORDO:3636504
For additional species annotation, visit the Alliance of Genome Resources.



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testicular germ cell cancer term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr3 fibroblast growth factor receptor 3 ISO ClinVar Annotator: match by term: Germ cell tumor of testis ClinVar PMID:7647778 PMID:8723106 PMID:8841188 PMID:9042914 PMID:9107244 More... NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase ISO ClinVar Annotator: match by term: Germ cell tumor of testis ClinVar PMID:7530509 PMID:9438854 PMID:10362788 PMID:11276010 PMID:15790786 More... NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652
JBrowse link
G Stk11 serine/threonine kinase 11 ISO ClinVar Annotator: match by term: Germ cell tumor of testis ClinVar PMID:25741868 PMID:26467025 PMID:28492532 NCBI chr 7:9,574,553...9,591,315
Ensembl chr 7:9,575,269...9,591,315
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19055
    disease of cellular proliferation 7788
      cancer 5631
        cell type cancer 3842
          germ cell cancer 124
            testicular germ cell cancer 3
              childhood testicular germ cell tumor 0
              testicular germ cell tumor non-seminomatous 0
              testicular malignant germ cell cancer + 0
              testicular pure germ cell tumor 0
Path 2
Term Annotations click to browse term
  disease 19055
    disease of anatomical entity 18391
      Urogenital Diseases 5266
        Male Urogenital Diseases 2034
          male reproductive system disease 2034
            Male Genital Neoplasms 1337
              Testicular Neoplasms 46
                testicular cancer 9
                  testicular germ cell cancer 3
                    childhood testicular germ cell tumor 0
                    testicular germ cell tumor non-seminomatous 0
                    testicular malignant germ cell cancer + 0
                    testicular pure germ cell tumor 0
paths to the root