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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:basaloid squamous cell carcinoma
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Accession:DOID:5522 term browser browse the term
Definition:A squamous cell carcinoma that has a solid, closely packed growth of cells with hyperchromatic nuclei, scant cytoplasm, small cystic spaces, and foci of necrosis. It has overlying squamous dysplasia, rare foci of overt keratinization, and/or coexistent keratinizing squamous cell carcinoma. (DO)
Synonyms:exact_synonym: Basaloid carcinoma
 xref: EFO:1001940;   ICDO:8083/3;   NCI:C54244
For additional species annotation, visit the Alliance of Genome Resources.


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basaloid squamous cell carcinoma term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptch1 patched 1 ISO DNA:missense mutations, nonsense mutations RGD PMID:25395299 RGD:150523793 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19140
    disease of cellular proliferation 7891
      Neoplasms by Histologic Type 5345
        Glandular and Epithelial Neoplasms 3800
          Basal Cell Neoplasms 164
            basal cell carcinoma 160
              basaloid squamous cell carcinoma 1
                anus basaloid carcinoma 0
                basaloid squamous cell skin carcinoma 0
                cervical basaloid squamous cell carcinoma 0
                esophageal basaloid squamous cell carcinoma 0
                penis basaloid carcinoma 0
                thymus basaloid carcinoma 0
                vulva verrucous carcinoma 0
                vulvar basaloid squamous cell carcinoma 0
Path 2
Term Annotations click to browse term
  disease 19140
    Pathological Conditions, Signs and Symptoms 13626
      Signs and Symptoms 11222
        Neurologic Manifestations 10464
          sensory system disease 7381
            skin disease 4322
              Skin Neoplasms 490
                skin cancer 254
                  skin carcinoma 174
                    basal cell carcinoma 160
                      basaloid squamous cell carcinoma 1
                        anus basaloid carcinoma 0
                        basaloid squamous cell skin carcinoma 0
                        cervical basaloid squamous cell carcinoma 0
                        esophageal basaloid squamous cell carcinoma 0
                        penis basaloid carcinoma 0
                        thymus basaloid carcinoma 0
                        vulva verrucous carcinoma 0
                        vulvar basaloid squamous cell carcinoma 0
paths to the root