RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
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CCL2
chemokine (C-C motif) ligand 2
treatment
ISO
RGD
PMID:8903512 PMID:17314328
RGD:8549743 RGD:8549770
NCBI chr12:40,798,109...40,800,013
Ensembl chr12:40,798,109...40,800,026
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CCL3L1
chemokine (C-C motif) ligand 3-like 1
ISO
associated with Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis
RGD
PMID:17898087 PMID:18846416
RGD:2307059 RGD:7241813
NCBI chr12:39,491,999...39,493,345
Ensembl chr12:39,491,914...39,493,774
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CD40
CD40 molecule
ISO
RGD
PMID:14569091
RGD:7248599
NCBI chr17:48,286,116...48,298,188
Ensembl chr17:48,286,029...48,298,528
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CD40LG
CD40 ligand
treatment
ISO
RGD
PMID:14569091
RGD:7248599
NCBI chr X:111,778,666...111,788,901
Ensembl chr X:111,778,493...111,789,709
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CSF1R
colony stimulating factor 1 receptor
treatment
ISO
RGD
PMID:23408165
RGD:151665815
NCBI chr 2:151,102,138...151,130,311
Ensembl chr 2:151,102,147...151,147,633
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IL1RN
interleukin 1 receptor antagonist
treatment
ISO
human protein in a rat model
RGD
PMID:7637259
RGD:8551712
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JUND
JunD proto-oncogene, AP-1 transcription factor subunit
ISO
RGD
PMID:18443593
RGD:2293336
NCBI chr 2:59,530,991...59,532,846
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LOC110258578
interleukin-1 beta-like
ISO
RGD
PMID:19959716
RGD:7175502
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MMP12
matrix metallopeptidase 12
ISO
RGD
PMID:12626598 PMID:20488952
RGD:2325762 RGD:737630
NCBI chr 9:33,473,625...33,483,630
Ensembl chr 9:33,473,093...33,483,679
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MMP9
matrix metallopeptidase 9
ISO
protein:increased expression:renal cortex (rat)
RGD
PMID:16046515
RGD:2313720
NCBI chr17:48,179,690...48,186,782
Ensembl chr17:48,179,671...48,186,788
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MTOR
mechanistic target of rapamycin kinase
ISO
RGD
PMID:21403644
RGD:7245940
NCBI chr 6:71,286,989...71,412,913
Ensembl chr 6:71,286,989...71,412,888
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STAT6
signal transducer and activator of transcription 6
ISO
RGD
PMID:21985369
RGD:7243976
NCBI chr 5:22,406,356...22,422,412
Ensembl chr 5:22,406,368...22,421,989
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TLR9
toll like receptor 9
severity
ISO
RGD
PMID:20847283
RGD:7246899
NCBI chr13:34,353,444...34,370,990
Ensembl chr13:34,349,609...34,357,673
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