RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
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Ccl2
C-C motif chemokine ligand 2
treatment
ISO
RGD
PMID:8903512 PMID:17314328
RGD:8549743 , RGD:8549770
NCBI chr11:81,926,403...81,928,278
Ensembl chr11:81,926,397...81,928,279
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Ccl3
C-C motif chemokine ligand 3
ISO
associated with Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis
RGD
PMID:18846416 PMID:17898087
RGD:7241813 , RGD:2307059
NCBI chr11:83,538,669...83,540,204
Ensembl chr11:83,538,670...83,540,181
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Cd40
CD40 antigen
IMP
RGD
PMID:14569091
RGD:7248599
NCBI chr 2:164,897,535...164,913,574
Ensembl chr 2:164,897,547...164,914,868
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Cd40lg
CD40 ligand
treatment
IMP
RGD
PMID:14569091
RGD:7248599
NCBI chr X:56,257,448...56,269,402
Ensembl chr X:56,257,503...56,269,402
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Csf1r
colony stimulating factor 1 receptor
treatment
ISO
RGD
PMID:23408165
RGD:151665815
NCBI chr18:61,238,644...61,264,211
Ensembl chr18:61,233,670...61,265,221
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Fcgr3
Fc receptor, IgG, low affinity III
ISO
DNA:CNV:3'UTR:
RGD
PMID:16482158
RGD:2293335
NCBI chr 1:170,878,738...170,893,477
Ensembl chr 1:170,878,743...170,892,504
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Il1b
interleukin 1 beta
ISO
RGD
PMID:19959716
RGD:7175502
NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059
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Il1rn
interleukin 1 receptor antagonist
treatment
ISO
human protein in a rat model
RGD
PMID:7637259
RGD:8551712
NCBI chr 2:24,226,872...24,241,503
Ensembl chr 2:24,226,865...24,241,506
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Jund
jun D proto-oncogene
ISO
RGD
PMID:18443593
RGD:2293336
NCBI chr 8:71,150,389...71,153,265
Ensembl chr 8:71,151,599...71,153,265
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Mmp12
matrix metallopeptidase 12
ISO
RGD
PMID:20488952 PMID:12626598
RGD:2325762 , RGD:737630
NCBI chr 9:7,344,397...7,360,461
Ensembl chr 9:7,344,381...7,369,499
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Mmp3
matrix metallopeptidase 3
ISO
RGD
PMID:11095647
RGD:7241255
NCBI chr 9:7,445,845...7,455,975
Ensembl chr 9:7,445,822...7,455,975
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Mmp9
matrix metallopeptidase 9
ISO
protein:increased expression:renal cortex (rat)
RGD
PMID:16046515
RGD:2313720
NCBI chr 2:164,782,246...164,797,770
Ensembl chr 2:164,782,700...164,797,770
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Mtor
mechanistic target of rapamycin kinase
ISO
RGD
PMID:21403644
RGD:7245940
NCBI chr 4:148,533,039...148,642,142
Ensembl chr 4:148,533,068...148,642,140
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Stat6
signal transducer and activator of transcription 6
IMP
RGD
PMID:21985369
RGD:7243976
NCBI chr10:127,478,855...127,496,856
Ensembl chr10:127,478,855...127,496,826
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Tlr9
toll-like receptor 9
severity
IMP
RGD
PMID:20847283
RGD:7246899
NCBI chr 9:106,099,797...106,104,075
Ensembl chr 9:106,099,797...106,104,082
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all