RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
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CCL2
C-C motif chemokine ligand 2
treatment
ISO
RGD
PMID:8903512 PMID:17314328
RGD:8549743 RGD:8549770
NCBI chr 9:39,008,187...39,009,932
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CD40
CD40 molecule
ISO
RGD
PMID:14569091
RGD:7248599
NCBI chr24:33,352,992...33,383,488
Ensembl chr24:33,372,930...33,383,301
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CD40LG
CD40 ligand
treatment
ISO
RGD
PMID:14569091
RGD:7248599
NCBI chr X:107,001,421...107,023,007
Ensembl chr X:107,010,890...107,023,006
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CSF1R
colony stimulating factor 1 receptor
treatment
ISO
RGD
PMID:23408165
RGD:151665815
NCBI chr 4:58,980,699...59,010,683
Ensembl chr 4:58,980,788...59,010,510
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IL1B
interleukin 1 beta
ISO
RGD
PMID:19959716
RGD:7175502
NCBI chr17:37,019,329...37,033,388
Ensembl chr17:37,019,329...37,024,458
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IL1RN
interleukin 1 receptor antagonist
treatment
ISO
human protein in a rat model
RGD
PMID:7637259
RGD:8551712
NCBI chr17:37,236,690...37,250,424
Ensembl chr17:37,212,751...37,249,329
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JUND
JunD proto-oncogene, AP-1 transcription factor subunit
ISO
RGD
PMID:18443593
RGD:2293336
NCBI chr20:44,737,021...44,738,932
Ensembl chr20:44,736,832...44,763,020
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LOC480600
chemokine (C-C motif) ligand 3
ISO
associated with Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis
RGD
PMID:17898087 PMID:18846416
RGD:2307059 RGD:7241813
NCBI chr 9:37,708,561...37,710,209
Ensembl chr 9:37,676,966...37,710,209
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MMP12
matrix metallopeptidase 12
ISO
RGD
PMID:12626598 PMID:20488952
RGD:2325762 RGD:737630
NCBI chr 5:28,918,626...28,933,404
Ensembl chr 5:28,918,594...28,933,309
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MMP3
matrix metallopeptidase 3 (stromelysin 1, progelatinase)
ISO
RGD
PMID:11095647
RGD:7241255
NCBI chr 5:28,949,631...28,957,915
Ensembl chr 5:28,949,631...28,958,222
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MMP9
matrix metallopeptidase 9
ISO
protein:increased expression:renal cortex (rat)
RGD
PMID:16046515
RGD:2313720
NCBI chr24:33,274,260...33,281,116
Ensembl chr24:33,274,268...33,281,293
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MTOR
mechanistic target of rapamycin kinase
ISO
RGD
PMID:21403644
RGD:7245940
NCBI chr 2:84,818,893...84,939,283
Ensembl chr 2:84,787,708...84,939,114
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STAT6
signal transducer and activator of transcription 6
ISO
RGD
PMID:21985369
RGD:7243976
NCBI chr10:1,232,515...1,247,011
Ensembl chr10:1,233,691...1,247,075
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TLR9
toll like receptor 9
severity
ISO
RGD
PMID:20847283
RGD:7246899
NCBI chr20:37,529,322...37,547,117
Ensembl chr20:37,542,340...37,547,114 Ensembl chr20:37,542,340...37,547,114
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all