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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:pyoderma
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Accession:DOID:4223 term browser browse the term
Definition:A dermatitis that is characterized by a pyogenic infection causing the formation of pus. (DO)
Synonyms:exact_synonym: Pyodermas
 primary_id: MESH:D011711
 xref: ICD10CM:L08.0;   ICD9CM:686.0
For additional species annotation, visit the Alliance of Genome Resources.



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PAPA syndrome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid3b AT-rich interaction domain 3B ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:58,193,268...58,240,901 JBrowse link
G C8h15orf39 similar to human chromosome 15 open reading frame 39 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:66,542,269...66,551,835 JBrowse link
G Ccdc33 coiled-coil domain containing 33 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:58,434,798...58,534,338 JBrowse link
G Cimap1c ciliary microtubule associated protein 1C ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,248,746...57,281,084 JBrowse link
G Clk3 CDC-like kinase 3 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:67,048,121...67,063,192 JBrowse link
G Commd4 COMM domain containing 4 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,566,236...57,569,701 JBrowse link
G Cox5a cytochrome c oxidase subunit 5A ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:66,818,284...66,829,691 JBrowse link
G Cplx3 complexin 3 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:58,003,535...58,010,297 JBrowse link
G Csk C-terminal Src kinase ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:66,925,650...66,944,861 JBrowse link
G Cspg4 chondroitin sulfate proteoglycan 4 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,264,962...57,300,010 JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:67,318,665...67,330,196 JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:66,991,940...66,998,014 JBrowse link
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:66,971,261...66,978,149 JBrowse link
G Edc3 enhancer of mRNA decapping 3 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:58,106,147...58,151,685 JBrowse link
G Etfa electron transfer flavoprotein subunit alpha ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:55,835,115...55,891,890 JBrowse link
G Fam219b family with sequence similarity 219, member B ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,941,327...57,946,916 JBrowse link
G Fbxo22 F-box protein 22 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:64,476,034...64,492,063 JBrowse link
G Il1b interleukin 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:27106250 NCBI chr 3:137,030,200...137,036,581 JBrowse link
G Imp3 IMP U3 small nucleolar ribonucleoprotein 3 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,339,528...57,340,416 JBrowse link
G Isl2 ISL LIM homeobox 2 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:55,923,805...55,928,790 JBrowse link
G Islr immunoglobulin superfamily containing leucine-rich repeat ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:67,467,013...67,469,989 JBrowse link
G Islr2 immunoglobulin superfamily containing leucine-rich repeat 2 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:58,608,165...58,616,246 JBrowse link
G Lman1l lectin, mannose-binding, 1 like ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:58,010,839...58,029,599 JBrowse link
G Loxl1 lysyl oxidase-like 1 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:58,691,763...58,716,365 JBrowse link
G Man2c1 mannosidase, alpha, class 2C, member 1 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,537,879...57,549,691 JBrowse link
G Mpi mannose phosphate isomerase ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,947,883...57,956,205 JBrowse link
G Neil1 nei-like DNA glycosylase 1 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,550,142...57,556,884 JBrowse link
G Nrg4 neuregulin 4 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:55,586,253...55,677,829 JBrowse link
G Pml PML nuclear body scaffold ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:58,627,347...58,661,927 JBrowse link
G Ppcdc phosphopantothenoylcysteine decarboxylase ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,815,195...57,842,863 JBrowse link
G Pstpip1 proline-serine-threonine phosphatase-interacting protein 1 ISO ClinVar Annotator: match by term: Familial recurrent arthritis | ClinVar Annotator: match by term: Pyogenic arthritis, pyoderma gangrenosum and acne | ClinVar Annotator: match by term: Pyogenic arthritis, pyoderma gangrenosum, and severe cystic acne
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
CTD
PMID:9262226 PMID:9536098 PMID:11971877 PMID:14595024 PMID:15580218 More... NCBI chr 8:56,499,287...56,538,593 JBrowse link
G Ptpn9 protein tyrosine phosphatase, non-receptor type 9 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,391,290...57,472,352 JBrowse link
G Rcn2 reticulocalbin 2 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:56,449,206...56,466,253 JBrowse link
G Rpp25 ribonuclease P and MRP subunit p25 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,907,352...57,908,732 JBrowse link
G Scamp2 secretory carrier membrane protein 2 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:66,861,504...66,888,151 JBrowse link
G Scamp5 secretory carrier membrane protein 5 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,845,831...57,884,516 JBrowse link
G Scaper S-phase cyclin A-associated protein in the ER ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:55,932,717...56,332,222 JBrowse link
G Sema7a semaphorin 7A (John Milton Hagen blood group) ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:58,348,448...58,370,536 JBrowse link
G Sin3a SIN3 transcription regulator family member A ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,481,539...57,536,195 JBrowse link
G Snupn snurportin 1 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,347,412...57,388,345 JBrowse link
G Snx33 sorting nexin 33 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:57,315,861...57,328,522 JBrowse link
G Stoml1 stomatin like 1 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:58,661,980...58,669,860 JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:58,548,899...58,568,861 JBrowse link
G Tmem266 transmembrane protein 266 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:55,707,122...55,820,692 JBrowse link
G Ube2q2 ubiquitin conjugating enzyme E2 Q2 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:55,518,402...55,578,342 JBrowse link
G Ubl7 ubiquitin-like 7 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:58,321,279...58,340,353 JBrowse link
G Ulk3 unc-51 like kinase 3 ISO ClinVar Annotator: match by term: Familial recurrent arthritis ClinVar PMID:28492532 NCBI chr 8:66,888,820...66,895,380 JBrowse link
pyoderma gangrenosum term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mefv MEFV innate immunity regulator, pyrin ISO CTD Direct Evidence: marker/mechanism CTD PMID:27106250 NCBI chr10:11,786,948...11,796,977 JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO protein:increased expression:skin RGD PMID:21658319 RGD:8657060 NCBI chr19:30,327,643...30,355,856 JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO protein:increased expression:skin RGD PMID:21658319 RGD:8657060 NCBI chr 3:174,103,474...174,111,434 JBrowse link
G Nlrp3 NLR family, pyrin domain containing 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27106250 NCBI chr10:44,826,299...44,853,373 JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27106250 NCBI chr19:34,555,832...34,596,281 JBrowse link
G Pstpip1 proline-serine-threonine phosphatase-interacting protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27106250 NCBI chr 8:56,499,287...56,538,593 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19139
    sensory system disease 7376
      skin disease 4320
        dermatitis 529
          pyoderma 52
            carbuncle 0
            cutaneous diphtheria 0
            ecthyma 0
            erythrasma 0
            impetigo + 0
            pyoderma gangrenosum + 52
Path 2
Term Annotations click to browse term
  disease 19139
    Pathological Conditions, Signs and Symptoms 13623
      Signs and Symptoms 11213
        Neurologic Manifestations 10448
          sensory system disease 7376
            skin disease 4320
              dermatitis 529
                pyoderma 52
                  carbuncle 0
                  cutaneous diphtheria 0
                  ecthyma 0
                  erythrasma 0
                  impetigo + 0
                  pyoderma gangrenosum + 52
paths to the root