RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: congenital diaphragmatic hernia
Accession: DOID:3827
browse the term
Definition: A diaphragm disease characterized by the lack of development of all or part of the diaphragm, which results in an abnormal opening that allows the stomach and intestines to move into the chest cavity and crowd the heart and lungs. (DO)
Synonyms: exact_synonym: Bochdalek hernias; CDH; DIH; HCD; Morgagni hernias; Morgagni's hernias; Morgagnis hernias; agenesis of hemidiaphragm; congenital diaphragmatic defect; congenital diaphragmatic defects; congenital diaphragmatic hernias; diaphragm unilateral ageneses; diaphragm unilateral agenesis; hemidiaphragm agenesis; unilateral agenesis of diaphragm
narrow_synonym: DIH1; complete agenesis of diaphragm; hemidiaphragm, agenesis of diaphragmatic hernia 1
primary_id: MESH:D065630
alt_id: MIM:142340
xref: EFO:0007216 ; GARD:1481 ; ICD10CM:Q79.0 ; MIM:PS142340 ; NCI:C34687 ; NCI:C98893 ; ORDO:2140
For additional species annotation, visit the
Alliance of Genome Resources .
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Ace
angiotensin I converting enzyme
IEP
protein:increased activity:lung (rat)
RGD
PMID:9498404
RGD:12859277
NCBI chr10:90,910,316...90,930,437
Ensembl chr10:90,910,316...90,931,131
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Agtr2
angiotensin II receptor, type 2
IMP
RGD
PMID:22113494
RGD:6903875
NCBI chr X:112,119,876...112,124,060
Ensembl chr X:112,120,228...112,124,057
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Atp7a
ATPase copper transporting alpha
IEP
mRNA, protein:decreased expression:diaphragm (rat)
RGD
PMID:25319798
RGD:11341670
NCBI chr X:71,094,144...71,201,550
Ensembl chr X:71,094,202...71,198,354
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Bmp4
bone morphogenetic protein 4
IEP
mRNA:decreased expression:heart:
RGD
PMID:18280291
RGD:9068407
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
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Cbl
Cbl proto-oncogene
IEP
mRNA,protein:decreased expression, hypophosphorylation:lung, alveolar epithelium:
RGD
PMID:23143077
RGD:11038813
NCBI chr 8:44,487,824...44,571,620
Ensembl chr 8:44,489,410...44,571,176
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Ccl2
C-C motif chemokine ligand 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:30418988
NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
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Ccn2
cellular communication network factor 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:20939759 PMID:21258935
NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734
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Des
desmin
ISO
CTD Direct Evidence: marker/mechanism ClinVar Annotator: match by term: Congenital diaphragmatic hernia
CTD ClinVar
PMID:14724127 PMID:15477095 PMID:16217025 PMID:16519886 PMID:16828798 PMID:16865695 PMID:17325244 PMID:17626518 PMID:20474083 PMID:21842594 PMID:22215463 PMID:23143191 PMID:23168288 PMID:23806086 PMID:23861362 PMID:24033266 PMID:24088041 PMID:25214167 PMID:25736269 PMID:25741868 PMID:26467025 PMID:27651373 PMID:28492532 More...
NCBI chr 9:76,850,979...76,858,695
Ensembl chr 9:76,850,982...76,858,699
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Eln
elastin
IEP
mRNA,protein:increased expression:lung:
RGD
PMID:12194112
RGD:9585688
NCBI chr12:21,968,544...22,011,929
Ensembl chr12:21,968,544...22,011,928
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Ep300
E1A binding protein p300
IEP
mRNA:decreased expression:lung
RGD
PMID:24488106
RGD:9588310
NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088 Ensembl chr 7:113,106,247...113,136,088
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Epo
erythropoietin
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:27880037
NCBI chr12:19,204,258...19,207,948
Ensembl chr12:19,204,508...19,207,946
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Fbn1
fibrillin 1
ISO
ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
PMID:23806086 PMID:24088041 PMID:25736269
NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889
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Fgfrl1
fibroblast growth factor receptor-like 1
ISO
CTD Direct Evidence: marker/mechanism ClinVar Annotator: match by term: Congenital diaphragmatic hernia
CTD ClinVar
PMID:20938900 PMID:25741868 PMID:28492532 PMID:33443296
NCBI chr14:1,009,863...1,022,620
Ensembl chr14:1,009,786...1,021,928
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Foxc2
forkhead box C2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:27663689
NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
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Foxf1
forkhead box F1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:27663689
NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738
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Fras1
Fraser extracellular matrix complex subunit 1
ISO
ClinVar Annotator: match by term: Agenesis of hemidiaphragm | ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
PMID:25741868 PMID:28492532
NCBI chr14:12,791,407...13,200,862
Ensembl chr14:12,793,599...13,200,726
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Frem1
Fras1 related extracellular matrix 1
ISO ISS IEP
DNA:deletion, frame shift:cds, splice junction: OMIM:142340 | OMIM:222400 | OMIM:610187 ClinVar Annotator: match by term: Agenesis of hemidiaphragm CTD Direct Evidence: marker/mechanism mRNA,protein:decreased expression:diaphragm:
MouseDO ClinVar CTD RGD
PMID:23221805 PMID:23806086 PMID:24088041 PMID:25736269 PMID:25741868 PMID:26382659 PMID:28492532 PMID:23221805 PMID:26382659 PMID:23221805 More...
RGD:11554181 , RGD:11554195 , RGD:11554181
NCBI chr 5:97,321,266...97,469,523
Ensembl chr 5:97,322,538...97,469,543
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Frem2
FRAS1 related extracellular matrix 2
ISO
ClinVar Annotator: match by term: Agenesis of hemidiaphragm | ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
PMID:25741868 PMID:28492532 PMID:30143558
NCBI chr 2:137,602,784...137,740,785
Ensembl chr 2:137,602,784...137,740,785
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Gata4
GATA binding protein 4
ISO ISS
CTD Direct Evidence: marker/mechanism OMIM:142340 | OMIM:222400 | OMIM:610187 ClinVar Annotator: match by term: Agenesis of hemidiaphragm
CTD MouseDO ClinVar
PMID:18076106 PMID:20874241 PMID:23426975 PMID:24033266 PMID:25741868 PMID:27374936 PMID:28492532 More...
NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636
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Gata6
GATA binding protein 6
IEP ISO
mRNA:decreased expression:heart (rat) ClinVar Annotator: match by term: Agenesis of hemidiaphragm | ClinVar Annotator: match by term: DIH
ClinVar RGD
PMID:22158542 PMID:24385578 PMID:25741868 PMID:18280291
RGD:9068407
NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532
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Gli3
GLI family zinc finger 3
ISO
ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
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Htr2a
5-hydroxytryptamine receptor 2A
IEP
mRNA, protein:increased expression:lung
RGD
PMID:24888825
RGD:401901089
NCBI chr15:49,950,035...50,022,188
Ensembl chr15:49,950,804...50,020,928
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Igf1
insulin-like growth factor 1
IEP
mRNA:decreased expression:heart (rat)
RGD
PMID:11409163
RGD:12904929
NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
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Igf1r
insulin-like growth factor 1 receptor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:20620343 PMID:21433279
NCBI chr 1:121,549,831...121,838,548
Ensembl chr 1:121,550,743...121,831,777
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Igf2
insulin-like growth factor 2
treatment
IEP
RGD
PMID:24352370
RGD:10402563
NCBI chr 1:197,814,409...197,831,802
Ensembl chr 1:197,814,410...197,823,018
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Igf2r
insulin-like growth factor 2 receptor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:20620343 PMID:21433279
NCBI chr 1:47,979,109...48,067,501
Ensembl chr 1:47,979,109...48,067,501
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Igfbp3
insulin-like growth factor binding protein 3
IEP
RGD
PMID:19844724
RGD:10402761
NCBI chr14:82,056,347...82,064,083
Ensembl chr14:82,056,347...82,064,083
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Igfbp5
insulin-like growth factor binding protein 5
IEP
RGD
PMID:19844724
RGD:10402761
NCBI chr 9:74,452,371...74,464,953
Ensembl chr 9:74,448,382...74,465,156
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Insr
insulin receptor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21433279
NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883
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Kcnq5
potassium voltage-gated channel subfamily Q member 5
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:28189443
NCBI chr 9:23,830,185...24,395,984
Ensembl chr 9:23,833,087...24,394,704
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Kif7
kinesin family member 7
IEP ISS
mRNA,protein:decreased expression:diaphragmatic mesenchyme, pulmonary mesenchyme; OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO RGD
PMID:25921351
RGD:11553839
NCBI chr 1:133,639,487...133,658,539
Ensembl chr 1:133,640,065...133,658,576
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Lcn2
lipocalin 2
IEP ISO
mRNA:decreased expression:lung protein:decreased expression:amniotic fluid
RGD
PMID:27592368 PMID:27592368
RGD:126790533 , RGD:126790533
NCBI chr 3:15,680,688...15,684,033
Ensembl chr 3:15,680,687...15,684,095
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Lrp1
LDL receptor related protein 1
ISS
OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO
NCBI chr 7:63,380,325...63,461,029
Ensembl chr 7:63,380,356...63,460,910
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Lztr1
leucine zipper like post translational regulator 1
ISO
ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
PMID:24362817 PMID:25335493 PMID:25480913 PMID:25741868 PMID:25795793 PMID:28492532 PMID:29469822 PMID:30368668 PMID:30442762 PMID:30442766 PMID:30481304 PMID:30859559 More...
NCBI chr11:83,487,717...83,503,896
Ensembl chr11:83,487,717...83,503,633
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Met
MET proto-oncogene, receptor tyrosine kinase
ISO
ClinVar Annotator: match by term: Agenesis of hemidiaphragm
ClinVar
PMID:1104268 PMID:14559814 PMID:17483355 PMID:21970370 PMID:22703879 PMID:23806086 PMID:24088041 PMID:24728327 PMID:25605252 PMID:25736269 PMID:25741868 PMID:25859546 PMID:26467025 PMID:28492532 PMID:32934698 More...
NCBI chr 4:45,790,456...45,898,139
Ensembl chr 4:45,790,791...45,897,876
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Mn1
MN1 proto-oncogene, transcriptional regulator
ISO
ClinVar Annotator: match by term: Agenesis of hemidiaphragm
ClinVar
PMID:25741868 PMID:31834374
NCBI chr12:45,181,794...45,220,959
Ensembl chr12:45,183,085...45,221,651
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Myo15a
myosin XVA
ISO
ClinVar Annotator: match by term: Agenesis of hemidiaphragm
ClinVar
PMID:24033266 PMID:25741868 PMID:26445815 PMID:27375115 PMID:28492532
NCBI chr10:45,277,619...45,335,953
Ensembl chr10:45,278,737...45,335,340
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Myod1
myogenic differentiation 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21258934
NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554
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Myrf
myelin regulatory factor
ISO
DNA:mutations:multiple: ClinVar Annotator: match by term: Agenesis of hemidiaphragm
ClinVar RGD
PMID:25741868 PMID:30532227 PMID:30532227
RGD:200226345
NCBI chr 1:206,854,175...206,886,276
Ensembl chr 1:206,854,175...206,886,157
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Ndst1
N-deacetylase and N-sulfotransferase 1
ISS
OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO
NCBI chr18:54,136,887...54,199,545
Ensembl chr18:54,140,779...54,178,191
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Nos3
nitric oxide synthase 3
IEP
protein:decreased expression:pulmonary artery (rat)
RGD
PMID:29216632
RGD:13504720
NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166
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Nr2f2
nuclear receptor subfamily 2, group F, member 2
ISS
OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO
NCBI chr 1:124,008,282...124,022,521
Ensembl chr 1:124,009,181...124,022,031
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Pax3
paired box 3
ISO
ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
PMID:8589691 PMID:8863157 PMID:9584079 PMID:9856573 PMID:23806086 PMID:24033266 PMID:24088041 PMID:25736269 PMID:25741868 PMID:26467025 PMID:28492532 PMID:29407415 More...
NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042
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Pdgfra
platelet derived growth factor receptor alpha
ISS
OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO
NCBI chr14:33,005,838...33,054,347
Ensembl chr14:33,005,839...33,054,335
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Pgap3
post-GPI attachment to proteins phospholipase 3
ISO
ClinVar Annotator: match by term: Agenesis of hemidiaphragm
ClinVar
PMID:25741868 PMID:30345601
NCBI chr10:83,387,113...83,399,357
Ensembl chr10:83,387,113...83,398,628
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Pim1
Pim-1 proto-oncogene, serine/threonine kinase
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25812446
NCBI chr20:7,554,921...7,559,174
Ensembl chr20:7,554,921...7,559,174
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Pls3
plastin 3
ISS ISO
OMIM:142340 | OMIM:222400 | OMIM:610187 ClinVar Annotator: match by term: Congenital diaphragmatic hernia
MouseDO ClinVar
PMID:25741868 PMID:37751738
NCBI chr X:111,589,193...111,683,908
Ensembl chr X:111,589,254...111,683,891
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Rhoa
ras homolog family member A
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25783350
NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746
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Robo4
roundabout guidance receptor 4
ISO
ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
NCBI chr 8:37,119,953...37,133,887
Ensembl chr 8:37,119,988...37,132,519
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Sftpa1
surfactant protein A1
treatment
IEP
RGD
PMID:11051153
RGD:151667435
NCBI chr16:17,008,180...17,011,686
Ensembl chr16:17,008,180...17,011,685
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Sftpb
surfactant protein B
treatment
IEP
RGD
PMID:11051153
RGD:151667435
NCBI chr 4:104,359,303...104,368,439
Ensembl chr 4:104,359,396...104,368,436
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Slc6a4
solute carrier family 6 member 4
IEP
protein:increased expression:lung
RGD
PMID:24888825
RGD:401901089
NCBI chr10:61,824,208...61,858,924
Ensembl chr10:61,826,123...61,858,384
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Slit2
slit guidance ligand 2
IEP
mRNA:increased expression:lung
RGD
PMID:19944214
RGD:243048459
NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948
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Slit3
slit guidance ligand 3
ISS IEP
OMIM:142340 | OMIM:222400 | OMIM:610187 mRNA:increased expression:lung
MouseDO RGD
PMID:19944214
RGD:243048459
NCBI chr10:19,571,798...20,156,634
Ensembl chr10:19,571,684...20,156,634
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Sod1
superoxide dismutase 1
IEP
mRNA:decreased expression:lung
RGD
PMID:26534761
RGD:11035301
NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249
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Sod2
superoxide dismutase 2
IEP
mRNA:decreased expression:lung
RGD
PMID:26534761
RGD:11035301
NCBI chr 1:47,638,318...47,645,163
Ensembl chr 1:47,636,528...47,645,189
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Sox7
SRY-box transcription factor 7
ISS
OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO
NCBI chr15:38,180,503...38,187,264
Ensembl chr15:38,180,503...38,187,264
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Stat3
signal transducer and activator of transcription 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25812446
NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
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Tnf
tumor necrosis factor
IEP
RGD
PMID:10541330
RGD:12904053
NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
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Vegfa
vascular endothelial growth factor A
IEP
protein:decreased expression:lung:
RGD
PMID:15879288
RGD:7421593
NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
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Wnt11
Wnt family member 11
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25783350
NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294
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Wt1
WT1 transcription factor
ISO ISS
CTD Direct Evidence: marker/mechanism OMIM:142340 | OMIM:222400 | OMIM:610187
CTD MouseDO
PMID:21072664
NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643
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Zfpm2
zinc finger protein, multitype 2
ISS
OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO
NCBI chr 7:71,678,658...72,116,209
Ensembl chr 7:71,678,880...72,116,205
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Pls3
plastin 3
ISO
ClinVar Annotator: match by term: Hernia, anterior diaphragmatic
OMIM ClinVar
PMID:25741868 PMID:37751738
NCBI chr X:111,589,193...111,683,908
Ensembl chr X:111,589,254...111,683,891
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Zfpm2
zinc finger protein, multitype 2
ISO
ClinVar Annotator: match by term: Diaphragmatic hernia 3 CTD Direct Evidence: marker/mechanism
OMIM ClinVar CTD
PMID:14517948 PMID:16103912 PMID:17568391 PMID:20807224 PMID:21919901 PMID:24702427 PMID:25741868 PMID:28492532 PMID:33461977 More...
NCBI chr 7:71,678,658...72,116,209
Ensembl chr 7:71,678,880...72,116,205
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Aldh1a2
aldehyde dehydrogenase 1 family, member A2
ISO
ClinVar Annotator: match by term: Diaphragmatic hernia 4, with cardiovascular defects
OMIM ClinVar
PMID:25741868 PMID:33565183
NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
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Lmbrd1
LMBR1 domain containing 1
ISO
ClinVar Annotator: match by term: Donnai-Barrow syndrome
ClinVar
PMID:19136951 PMID:25741868 PMID:28492532
NCBI chr 9:27,096,387...27,178,095
Ensembl chr 9:27,096,297...27,178,090
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Lrp2
LDL receptor related protein 2
ISO ISS
ClinVar Annotator: match by term: Diaphragmatic hernia exomphalos absent corpus callosum hypertelorism myopia sensorineural deafness and proteinuria | ClinVar Annotator: match by term: Donnai-Barrow syndrome | ClinVar Annotator: match by term: LRP2-related condition OMIM:222448 CTD Direct Evidence: marker/mechanism
OMIM ClinVar MouseDO CTD
PMID:8266995 PMID:9475100 PMID:9536098 PMID:12923867 PMID:16199547 PMID:17576681 PMID:17632512 PMID:18414213 PMID:20301732 PMID:20359920 PMID:23033978 PMID:23048173 PMID:23992033 PMID:24319098 PMID:24406863 PMID:24876117 PMID:25158045 PMID:25326635 PMID:25682901 PMID:25741868 PMID:26118977 PMID:26284228 PMID:26350204 PMID:26529358 PMID:28492532 PMID:28539120 PMID:29992659 PMID:30167849 PMID:32238909 PMID:33103447 PMID:33461977 PMID:34979047 PMID:36474027 PMID:38177409 More...
NCBI chr 3:54,189,305...54,346,769
Ensembl chr 3:54,189,308...54,346,708
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