Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:IgA glomerulonephritis
go back to main search page
Accession:DOID:2986 term browser browse the term
Definition:A glomerulonephritis characterized by build up of IgA antibody in the glomerulus. (DO)
Synonyms:exact_synonym: Berger disease;   Berger's IgA or IgG nephropathy;   Berger's disease;   Bergers Disease;   Glomerulonephritides, IGA;   IGA Nephropathy;   IGA Type Nephritis;   IGAN;   IGAN1;   IGAN2;   IGAN3;   IgA NEPHROPATHY, SUSCEPTIBILITY TO, 1;   IgA NEPHROPATHY, SUSCEPTIBILITY TO, 2;   Iga Nephropathy 1;   focal glomerulonephritis;   immunoglobulin A nephropathy;   primary IgA nephropathy;   segmental glomerulonephritis;   susceptibility to IgA nephropathy-3
 related_synonym: Iga nephropathy, susceptibility to;   susceptibility to progression to renal failure in IgA nephropathy
 primary_id: MESH:D005922
 alt_id: MIM:161950;   MIM:613944;   MIM:616818
 xref: EFO:0004194;   GARD:863;   MIM:PS161950;   NCI:C34643;   NCI:C35280
For additional species annotation, visit the Alliance of Genome Resources.



show annotations for term's descendants           Sort by:
IgA glomerulonephritis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ace angiotensin I converting enzyme disease_progression ISO DNA:polymorphism:intron:
CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Susceptibility to progression to renal failure in IgA nephropathy
CTD
ClinVar
RGD
PMID:1313972 PMID:1319114 PMID:1328889 PMID:1386652 PMID:1976655 More... RGD:1331525, RGD:7257515 NCBI chr10:91,410,129...91,430,246 JBrowse link
G Acsm3 acyl-CoA synthetase medium-chain family member 3 disease_progression ISO DNA:polymorphism: : RGD PMID:12484505 RGD:7241283 NCBI chr 1:174,133,260...174,159,966 JBrowse link
G Adam10 ADAM metallopeptidase domain 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:32715474 NCBI chr 8:71,346,008...71,477,889 JBrowse link
G Add1 adducin 1 disease_progression ISO DNA:polymorphism:cds:rs4961(human) RGD PMID:19838659 RGD:7174725 NCBI chr14:76,108,643...76,167,267 JBrowse link
G Add2 adducin 2 disease_progression ISO DNA:polymorphism:cds: rs4984(human) RGD PMID:19838659 RGD:7174725 NCBI chr 4:118,444,594...118,538,505 JBrowse link
G Agt angiotensinogen ISO CTD Direct Evidence: marker/mechanism CTD PMID:9259580 NCBI chr19:69,426,540...69,447,017 JBrowse link
G Agtr1a angiotensin II receptor, type 1a ISO protein:increased expression:kidney tubule RGD PMID:15930094 RGD:6903851 NCBI chr17:34,383,397...34,435,523 JBrowse link
G Agtr2 angiotensin II receptor, type 2 disease_progression ISO DNA:polymorphism: :1818A>T (human)
protein:increased expression:kidney tubule
RGD PMID:19194560 PMID:15930094 RGD:6903844, RGD:6903851 NCBI chr  X:116,914,320...116,918,504 JBrowse link
G Aurkb aurora kinase B ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr10:54,243,116...54,249,675 JBrowse link
G B4galt1 beta-1,4-galactosyltransferase 1 ISS OMIM:161950 | OMIM:616818 MouseDO NCBI chr 5:55,935,614...55,982,461 JBrowse link
G C1qa complement C1q A chain ISO CTD Direct Evidence: marker/mechanism CTD PMID:8840296 PMID:25133636 NCBI chr 5:154,417,086...154,419,933 JBrowse link
G C1qb complement C1q B chain ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr 5:149,118,843...149,124,394 JBrowse link
G C2 complement C2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr20:3,951,474...3,970,376 JBrowse link
G C3 complement C3 ISO mRNA,protein:increased expression, increased activity:kidney RGD PMID:11287758 RGD:7175543 NCBI chr 9:2,174,412...2,201,339 JBrowse link
G Card9 caspase recruitment domain family, member 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25305756 NCBI chr 3:29,569,907...29,578,402 JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IEP protein:increased expression:kidney RGD PMID:18433541 RGD:2307041 NCBI chr10:67,503,077...67,504,875 JBrowse link
G Ccl20 C-C motif chemokine ligand 20 disease_progression ISO RGD PMID:23192593 RGD:7483632 NCBI chr 9:91,837,139...91,839,736 JBrowse link
G Ccr6 C-C motif chemokine receptor 6 disease_progression ISO RGD PMID:23192593 RGD:7483632 NCBI chr 1:55,022,037...55,055,857 JBrowse link
G Cd14 CD14 molecule disease_progression ISO DNA:polymorphism:promoter:c. -159C>T (human) RGD PMID:12566518 RGD:7204499 NCBI chr18:28,609,558...28,611,409 JBrowse link
G Cd163 CD163 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr 4:157,085,080...157,118,470 JBrowse link
G Cd44 CD44 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr 3:109,610,824...109,699,776 JBrowse link
G Cfb complement factor B disease_progression ISO mRNA:increased expression:kidney
protein:increased expression:serum
RGD PMID:8567024 PMID:3118258 PMID:17385664 RGD:7242737, RGD:7242754, RGD:7242759 NCBI chr20:3,970,643...3,976,510 JBrowse link
G Cfhr1 complement factor H-related 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21399633 NCBI chr13:51,395,583...51,410,571 JBrowse link
G Chga chromogranin A ISO associated with Hypertension;DNA:polymorphism:promoter:-415T>C (human) RGD PMID:20113265 RGD:6906902 NCBI chr 6:121,696,051...121,707,399 JBrowse link
G Coro1c coronin 1C ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr12:42,713,024...42,785,179 JBrowse link
G Cxcr2 C-X-C motif chemokine receptor 2 ISO DNA:SNPs: :rs4674257, rs4674259 (human) RGD PMID:21214373 RGD:7257677 NCBI chr 9:75,729,493...75,735,868 JBrowse link
G Defa5 defensin alpha 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22197929 PMID:25305756 NCBI chr16:70,342,530...70,344,854 JBrowse link
G Fabp1 fatty acid binding protein 1 ISO protein:increased expression:urine (human) RGD PMID:16118482 RGD:1578453 NCBI chr 4:104,744,302...104,753,119 JBrowse link
G Fas Fas cell surface death receptor treatment IDA RGD PMID:29844269 RGD:13792576 NCBI chr 1:241,212,155...241,245,774 JBrowse link
G Fcar Fc alpha receptor ISO RGD PMID:22451718 PMID:21985370 RGD:7242063, RGD:7242167 NCBI chr 1:69,626,458...69,660,558 JBrowse link
G Fcgr3a Fc gamma receptor 3A disease_progression ISO DNA:polymorphism:exon:p.F176V(human) RGD PMID:16221721 RGD:5508463 NCBI chr13:85,782,636...85,792,656 JBrowse link
G Fn1 fibronectin 1 ISO protein:increased expression:kidney RGD PMID:15925904 RGD:7206844 NCBI chr 9:80,645,507...80,714,200 JBrowse link
G Foxm1 forkhead box M1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr 4:163,325,628...163,338,100 JBrowse link
G Gpr183 G protein-coupled receptor 183 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr15:105,445,129...105,457,192 JBrowse link
G Havcr1 hepatitis A virus cellular receptor 1 ISO protein:increased expression:urine: RGD PMID:23135864 PMID:21467131 RGD:7245479, RGD:7245983 NCBI chr10:31,118,667...31,151,730 JBrowse link
G Hpse heparanase ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr14:9,200,971...9,241,377 JBrowse link
G Igf1r insulin-like growth factor 1 receptor ISO DNA: snp::rs2229765 RGD PMID:21047277 RGD:7242795 NCBI chr 1:130,959,787...131,248,664 JBrowse link
G Il18 interleukin 18 ISO RGD PMID:22518072 RGD:6893446 NCBI chr 8:59,802,072...59,829,275 JBrowse link
G Il1a interleukin 1 alpha no_association ISO DNA:SNP:promoter:-889C>T (human) RGD PMID:21049406 RGD:6907116 NCBI chr 3:136,979,804...136,990,236 JBrowse link
G Il1b interleukin 1 beta no_association ISO DNA:SNPs: :rs1143627, rs3917356, rs1143633 (human) RGD PMID:19280228 PMID:21049406 RGD:6907082, RGD:6907116 NCBI chr 3:137,030,200...137,036,581 JBrowse link
G Il1rn interleukin 1 receptor antagonist susceptibility ISO DNA:repeats:intron:IVS2+914_1000dup IL1RN*2 (human)
DNA:polymorphisms:intron, 3' utr:IVS1+1890G>T, IVS1+8796A>G, *138C>G (rs928940, rs439154, rs315951) (human)
protein:decreased expression:serum, urine (human)
rat model treated with human protein
response to immunoglobulin therapy
mouse model treated with human protein
RGD PMID:10916103 PMID:19280228 PMID:16209246 PMID:10566895 PMID:10079261 More... RGD:6906961, RGD:6907082, RGD:6907414, RGD:6907427, RGD:6909131, RGD:6909132, RGD:6909150 NCBI chr 3:27,509,836...27,525,738 JBrowse link
G Kif15 kinesin family member 15 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr 8:131,479,340...131,550,209 JBrowse link
G Lair1 leukocyte-associated immunoglobulin-like receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr 1:79,140,850...79,261,546 JBrowse link
G Laptm5 lysosomal protein transmembrane 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr 5:143,087,759...143,109,807 JBrowse link
G Lcn2 lipocalin 2 ISO protein:increased expression:urine: RGD PMID:21467131 RGD:7245983 NCBI chr 3:36,078,432...36,081,851 JBrowse link
G Lhfpl2 LHFPL tetraspan subfamily member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr 2:25,281,771...25,428,128 JBrowse link
G Man2b1 mannosidase, alpha, class 2B, member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr19:23,055,092...23,074,398 JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr 3:136,391,936...136,498,366 JBrowse link
G Mir20a microRNA 20a disease_progression ISO RGD PMID:29459010 RGD:25823149 NCBI chr15:92,181,084...92,181,168 JBrowse link
G Mmp14 matrix metallopeptidase 14 IEP mRNA:increased expression:glomerulus RGD PMID:9848780 RGD:2314955 NCBI chr15:27,887,795...27,897,020 JBrowse link
G Ms4a6a membrane spanning 4-domains A6A ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr 1:208,401,465...208,414,831 JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO DNA:polymorphism:Cds :2756A>G(human) RGD PMID:21737517 RGD:7207085 NCBI chr17:62,911,705...62,996,544 JBrowse link
G Muc20 mucin 20, cell surface associated disease_progression ISO DNA:repeat RGD PMID:16508246 RGD:7364789 NCBI chr11:67,987,816...68,001,496 JBrowse link
G Ngf nerve growth factor ISO DNA:SNP: :rs11102930 (human) RGD PMID:21178826 RGD:7242801 NCBI chr 2:192,589,580...192,642,971 JBrowse link
G Notch2 notch receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:32715474 NCBI chr 2:185,610,594...185,744,088 JBrowse link
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 ISO protein:increased expression:kidney RGD PMID:22279542 RGD:7175260 NCBI chr 1:204,387,215...204,395,495 JBrowse link
G Pde5a phosphodiesterase 5A ISO DNA:SNP: :rs13124532(human) RGD PMID:20563733 RGD:7248685 NCBI chr 2:210,858,515...211,003,480 JBrowse link
G Pigr polymeric immunoglobulin receptor ISO ClinVar Annotator: match by term: IgA glomerulonephritis ClinVar PMID:12740691 PMID:16282702 NCBI chr13:42,298,905...42,326,877 JBrowse link
G Pla2g7 phospholipase A2 group VII disease_progression ISO DNA:polymorphism:exon: RGD PMID:12220450 RGD:7257515 NCBI chr 9:17,362,214...17,404,476 JBrowse link
G Plau plasminogen activator, urokinase ISO CTD Direct Evidence: therapeutic CTD PMID:9002298 NCBI chr15:3,505,485...3,511,987 JBrowse link
G Prc1 protein regulator of cytokinesis 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr 1:143,659,312...143,681,019 JBrowse link
G RT1-Bb RT1 class II, locus Bb disease_progression ISO CTD Direct Evidence: marker/mechanism
DNA:polymorphism: :HLA-DQB1*0301(human)
CTD
RGD
PMID:25305756 PMID:7638860 RGD:36174018 NCBI chr20:4,598,475...4,604,118 JBrowse link
G Scgb1a1 secretoglobin family 1A member 1 disease_progression ISO
ISS
OMIM:161950 | OMIM:616818 MouseDO
RGD
PMID:11967037 RGD:6903255 NCBI chr 1:215,406,138...215,409,686 JBrowse link
G Sele selectin E ISO DNA:SNP:exon:p.H468Y (human)
ClinVar Annotator: match by term: IgA nephropathy, susceptibility to
ClinVar
RGD
PMID:11828340 PMID:16282702 PMID:11828340 RGD:1625253 NCBI chr13:78,935,997...78,945,905 JBrowse link
G Sell selectin L ISO RGD PMID:17452405 PMID:11828340 RGD:7175290, RGD:1625253 NCBI chr13:78,950,100...78,969,604 JBrowse link
G Serpinb7 serpin family B member 7 disease_progression ISO DNA:SNPs:3' utr:2093C>T, 2180C>T (human)
DNA:SNP: :23167A>G (human)
DNA:SNP:5' utr, exon:267G>A (human)
RGD PMID:18793525 PMID:16550745 PMID:16796905 RGD:7207366, RGD:7207372, RGD:7207380 NCBI chr13:23,369,830...23,442,205 JBrowse link
G Shh sonic hedgehog signaling molecule ISO RGD PMID:24744439 RGD:12859042 NCBI chr 4:6,954,017...6,963,170 JBrowse link
G Slc43a3 solute carrier family 43, member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr 3:70,008,160...70,030,324 JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 susceptibility ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: IgA nephropathy, susceptibility to, 3
OMIM
CTD
ClinVar
PMID:25741868 PMID:25782674 NCBI chr15:82,692,291...82,697,408 JBrowse link
G St6galnac2 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17480010 NCBI chr10:101,910,220...101,928,412 JBrowse link
G Stat4 signal transducer and activator of transcription 4 disease_progression
no_association
ISO DNA:SNP: :rs7561832 (human)
DNA:SNP:intron:c.274-28828C>G (rs10181656) (human)
RGD PMID:20045654 PMID:20479942 RGD:7207872, RGD:7207878 NCBI chr 9:49,472,660...49,588,540 JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11728950 NCBI chr 1:90,324,312...90,340,627 JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr  X:3,766,509...3,772,578 JBrowse link
G Tlr1 toll-like receptor 1 susceptibility ISO DNA:snps:promoter, cds:g.-414C>T, p.N248S (rs5743557, rs4833095) (human) RGD PMID:21108742 RGD:7246898 NCBI chr14:43,737,761...43,750,389 JBrowse link
G Tlr9 toll-like receptor 9 severity
treatment
ISO DNA, mRNA:SNP, increased expression:exon, spleen:g.159C>G (mouse)
DNA:SNPs:intron, exon:IVS4-44A>G, c.1635G>A (rs352139, rs352140) (human)
associated with Graft vs Host Disease
associated with Graft vs Host Disease; mRNA:increased expression:splenocyte (mouse)
RGD PMID:18776126 PMID:18776126 PMID:21621468 PMID:21621468 RGD:7246889, RGD:7246889, RGD:7246893, RGD:7246893 NCBI chr 8:115,743,407...115,747,523 JBrowse link
G Tnf tumor necrosis factor treatment ISO RGD PMID:9844059 RGD:6909132 NCBI chr20:3,626,685...3,629,303 JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A treatment ISO protein:increased expression:serum RGD PMID:16209246 PMID:9844059 RGD:6907414, RGD:6909132 NCBI chr 4:159,837,119...159,849,817 JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B treatment ISO protein:increased expression:serum RGD PMID:16209246 PMID:9844059 RGD:6907414, RGD:6909132 NCBI chr 5:157,070,642...157,104,216 JBrowse link
G Tnfsf13 TNF superfamily member 13 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22197929 NCBI chr10:54,400,054...54,403,723 JBrowse link
G Tnfsf13b TNF superfamily member 13b ISS OMIM:161950 MouseDO NCBI chr16:79,462,406...79,492,888 JBrowse link
G Tnfsf14 TNF superfamily member 14 ISS OMIM:161950 MouseDO NCBI chr 9:2,155,270...2,160,100 JBrowse link
G Vav3 vav guanine nucleotide exchange factor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25305756 NCBI chr 2:199,699,861...200,042,344 JBrowse link
G Vsig4 V-set and immunoglobulin domain containing 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25133636 NCBI chr  X:61,144,926...61,170,212 JBrowse link
G Was WASP actin nucleation promoting factor ISS OMIM:161950 | OMIM:616818 MouseDO NCBI chr  X:17,077,057...17,085,802 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19139
    disease of anatomical entity 18450
      immune system disease 5029
        autoimmune disease 2370
          IgA glomerulonephritis 84
            Fitzsimmons Walson Mellor Syndrome 0
Path 2
Term Annotations click to browse term
  disease 19139
    disease of anatomical entity 18450
      Urogenital Diseases 5391
        urinary system disease 2832
          kidney disease 2580
            Glomerular Diseases 440
              glomerulonephritis 433
                IgA glomerulonephritis 84
                  Fitzsimmons Walson Mellor Syndrome 0
paths to the root