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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:ovarian germ cell cancer
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Accession:DOID:2156 term browser browse the term
Definition:An ovarian cancer that originates in the germ (egg) cells of the ovary. (DO)
Synonyms:exact_synonym: germ cell neoplasm of ovary;   germ cell tumor of ovary
 related_synonym: ovarian germ cell tumor
 primary_id: MESH:C562841
 alt_id: MIM:603737
 xref: EFO:1000419;   GARD:9330;   NCI:C3873
For additional species annotation, visit the Alliance of Genome Resources.


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ovarian germ cell cancer term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbl Cbl proto-oncogene ISO ClinVar Annotator: match by term: Ovarian germ cell cancer ClinVar PMID:16199547 PMID:19571318 PMID:20694012 PMID:20955399 PMID:21901340 More... NCBI chr 8:53,384,656...53,468,067
Ensembl chr 8:53,384,656...53,468,067 		JBrowse link
G Sall4 spalt-like transcription factor 4 ISO protein:increased expression:female gonad (human) RGD PMID:19295406 RGD:11556233 NCBI chr 3:177,891,705...177,909,743
Ensembl chr 3:177,891,705...177,909,743 		JBrowse link
malignant ovarian germ cell neoplasm term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbl Cbl proto-oncogene ISO ClinVar Annotator: match by term: Malignant germ cell tumor of ovary ClinVar PMID:16199547 PMID:19571318 PMID:20694012 PMID:20955399 PMID:21901340 More... NCBI chr 8:53,384,656...53,468,067
Ensembl chr 8:53,384,656...53,468,067 		JBrowse link
G Fancm FA complementation group M ISO ClinVar Annotator: match by term: Malignant germ cell tumor of ovary ClinVar PMID:17289582 PMID:18174376 PMID:19379763 PMID:23409019 PMID:23932590 More... NCBI chr 6:88,862,898...88,916,701
Ensembl chr 6:88,863,306...88,921,652 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19150
    disease of cellular proliferation 7899
      Neoplasms by Histologic Type 5351
        Gonadal Tissue Neoplasms 147
          germ cell cancer 122
            ovarian germ cell cancer 3
              childhood ovarian germ cell tumor + 0
              dysgerminoma of ovary + 0
              malignant ovarian germ cell neoplasm + 2
              ovarian germ cell teratoma + 0
Path 2
Term Annotations click to browse term
  disease 19150
    disease of anatomical entity 18459
      Urogenital Diseases 5416
        Female Urogenital Diseases and Pregnancy Complications 2689
          Female Urogenital Diseases 2199
            female reproductive system disease 2196
              Adnexal Diseases 1085
                ovarian disease 1076
                  Ovarian Neoplasms 760
                    ovarian cancer 641
                      ovarian germ cell cancer 3
                        childhood ovarian germ cell tumor + 0
                        dysgerminoma of ovary + 0
                        malignant ovarian germ cell neoplasm + 2
                        ovarian germ cell teratoma + 0
paths to the root