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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:breast cancer
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Accession:DOID:1612 term browser browse the term
Definition:An organ system cancer that originates in the mammary gland. (DO)
Synonyms:exact_synonym: BRCATA;   breast malignant neoplasms;   breast malignant tumor;   breast malignant tumors;   cancer of breast;   malignant neoplasm breast;   malignant neoplasm of breast;   malignant neoplasm of female breast;   malignant tumor of breast;   malignant tumor of the breast;   mammary cancer;   mammary tumor;   primary breast cancer
 narrow_synonym: HEREDITARY BREAST CANCER, ABRAXAS1-RELATED;   PMS1-RELATED BREAST CANCER;   RAD54L-RELATED CONDITION;   breast cancer, 11-22 translocation-associated;   breast cancer, early onset;   breast cancer, invasive ductal;   breast cancer, lobular
 broad_synonym: PPM1D-RELATED CONDITION
 related_synonym: breast cancer, post-chemotherapy poor survival in;   breast cancer, protection against;   breast cancer, somatic;   breast cancer, susceptibility to
 xref: EFO:0009649;   ICD10CM:C50;   MIM:114480;   MONDO:0007254;   NCI:C9335
For additional species annotation, visit the Alliance of Genome Resources.

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show annotations for term's descendants           Sort by:
breast cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abraxas1 abraxas 1, BRCA1 A complex subunit ISO ClinVar Annotator: match by term: Hereditary breast cancer, ABRAXAS1-related | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955474:6,252,321...6,265,518
Ensembl chrNW_004955474:6,252,321...6,265,286 		JBrowse link
G Acsl3 acyl-CoA synthetase long chain family member 3 disease_progression ISO DNA:deletion
mRNA:increased expression:breast		 RGD PMID:23512947 PMID:28977883 RGD:13831299 RGD:13831301 NCBI chrNW_004955453:10,916,423...10,963,986
Ensembl chrNW_004955453:10,913,786...10,947,963 		JBrowse link
G Adam28 ADAM metallopeptidase domain 28 exacerbates ISO RGD PMID:19549921 RGD:153298911 NCBI chrNW_004955403:47,304,711...47,409,369
Ensembl chrNW_004955403:47,319,382...47,409,380 		JBrowse link
G Adipoq adiponectin, C1Q and collagen domain containing no_association ISO protein:decreased expression:serum
DNA:SNPs: :rs1501299, rs2241766 (human)		 RGD PMID:16019138 PMID:17192291 PMID:18451143 PMID:19723917 RGD:8694415 RGD:8694417 RGD:8694425 RGD:8694447 NCBI chrNW_004955420:20,911,181...20,922,992
Ensembl chrNW_004955420:20,912,348...20,914,402 		JBrowse link
G Adipor1 adiponectin receptor 1 no_association ISO DNA:SNPs: :rs7539542 (human) RGD PMID:18451143 PMID:19723917 RGD:8694415 RGD:8694417 NCBI chrNW_004955406:38,939,167...38,955,647
Ensembl chrNW_004955406:38,936,588...38,955,352 		JBrowse link
G Adipor2 adiponectin receptor 2 no_association ISO RGD PMID:19723917 RGD:8694417 NCBI chrNW_004955454:4,243,898...4,327,255
Ensembl chrNW_004955454:4,243,898...4,327,308 		JBrowse link
G Adm adrenomedullin ISO RGD PMID:16841081 RGD:2325318 NCBI chrNW_004955414:25,951,473...25,953,593
Ensembl chrNW_004955414:25,951,349...25,953,645 		JBrowse link
G Adsl adenylosuccinate lyase severity ISO protein:increased activity:tumor (human)
protein:increased activity:tumor (rat)		 RGD PMID:2937404 PMID:3690833 RGD:1598760 RGD:1598766 NCBI chrNW_004955413:26,067,463...26,084,669
Ensembl chrNW_004955413:26,067,516...26,088,527 		JBrowse link
G Agr2 anterior gradient 2, protein disulphide isomerase family member disease_progression ISO RGD PMID:16598187 RGD:2325661 NCBI chrNW_004955410:19,984,768...19,995,446
Ensembl chrNW_004955410:19,984,768...19,995,733 		JBrowse link
G Agt angiotensinogen susceptibility ISO DNA:polymorphism: :p.M235T (human)
DNA:polymorphisms, haplotypes: :p.T174M, p.M235T (human)
protein:increased expression:serum		 RGD PMID:16823505 PMID:23374911 PMID:23828384 RGD:8548861 RGD:8548866 RGD:8548901 NCBI chrNW_004955492:7,863,662...7,874,863
Ensembl chrNW_004955492:7,866,833...7,873,357 		JBrowse link
G Agtr1 angiotensin II receptor type 1 ISO DNA:polymorphism, haplotype: :1166A>C (human) RGD PMID:23828384 RGD:8548866 NCBI chrNW_004955474:8,733,942...8,781,305
Ensembl chrNW_004955474:8,733,942...8,781,255 		JBrowse link
G Aif1l allograft inflammatory factor 1 like severity ISO RGD PMID:30233209 RGD:13842475 NCBI chrNW_004955513:936,889...954,667
Ensembl chrNW_004955513:936,889...954,667 		JBrowse link
G Akr1a1 aldo-keto reductase family 1 member A1 ISO mRNA:increased expression:breast RGD PMID:25526449 RGD:27226689 NCBI chrNW_004955464:12,715,238...12,729,034
Ensembl chrNW_004955464:12,714,717...12,729,662 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO ClinVar Annotator: match by term: Breast cancer, somatic
ClinVar Annotator: match by term: Malignant tumor of breast		 OMIM
ClinVar		 PMID:17611497 PMID:18256540 PMID:18392055 PMID:18504432 PMID:18611285 More... NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904 		JBrowse link
G Alox5ap arachidonate 5-lipoxygenase activating protein ISO DNA:polymorphism:g.-4800A>G (human) RGD PMID:18843019 RGD:2313902 NCBI chrNW_004955431:15,071,535...15,097,496
Ensembl chrNW_004955431:15,069,089...15,097,580 		JBrowse link
G Amh anti-Mullerian hormone onset ISO RGD PMID:19820206 RGD:2315637 NCBI chrNW_004955495:5,893,375...5,896,152
Ensembl chrNW_004955495:5,893,446...5,895,912 		JBrowse link
G Antxr1 ANTXR cell adhesion molecule 1 disease_progression ISO mRNA:increased expression:breast: RGD PMID:17016666 RGD:9684946 NCBI chrNW_004955424:15,820,734...16,034,278
Ensembl chrNW_004955424:15,824,435...16,033,946 		JBrowse link
G Anxa7 annexin A7 disease_progression ISO protein:increased expression:breast RGD PMID:15073110 RGD:2292655 NCBI chrNW_004955437:18,394,371...18,421,779 JBrowse link
G Aopep aminopeptidase O (putative) ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:7689011 PMID:08128956 PMID:08844212 PMID:8882868 PMID:9521584 More... NCBI chrNW_004955422:21,680,488...22,020,935 JBrowse link
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:8940262 PMID:9288102 PMID:9585599 PMID:9724771 PMID:9731522 More... NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 susceptibility ISO DNA:polymorphism: :p.D148E (human) RGD PMID:18701435 RGD:2315661 NCBI chrNW_004955550:1,273,170...1,275,843
Ensembl chrNW_004955550:1,273,284...1,279,743 		JBrowse link
G Apoc3 apolipoprotein C3 disease_progression ISO RGD PMID:28715644 RGD:153350084 NCBI chrNW_004955412:18,165,667...18,168,015
Ensembl chrNW_004955412:18,165,667...18,168,015 		JBrowse link
G Apoe apolipoprotein E no_association
susceptibility		 ISO DNA:polymprphism:exon:
DNA:polymorphism:exon:		 RGD PMID:15830139 PMID:16752225 RGD:7495789 RGD:7771592 NCBI chrNW_004955555:1,998,170...2,002,003
Ensembl chrNW_004955555:1,999,711...2,001,888 		JBrowse link
G Areg amphiregulin ISO RGD PMID:16438846 RGD:2292658 NCBI chrNW_004955474:680,212...689,021
Ensembl chrNW_004955474:680,204...689,088 		JBrowse link
G Arid1a AT-rich interaction domain 1A treatment ISO human cells in mouse model RGD PMID:26069190 RGD:11072938 NCBI chrNW_004955452:6,068,631...6,120,759
Ensembl chrNW_004955452:6,068,631...6,120,759 		JBrowse link
G Asf1b anti-silencing function 1B histone chaperone disease_progression ISO RGD PMID:21179005 RGD:9586017 NCBI chrNW_004955415:32,818,592...32,828,651
Ensembl chrNW_004955415:32,817,547...32,828,651 		JBrowse link
G Atm ATM serine/threonine kinase susceptibility ISO ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar
OMIM
RGD		 PMID:1160401 PMID:1739330 PMID:1739584 PMID:2166257 PMID:2677459 More... RGD:1643350 NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545 		JBrowse link
G Atr ATR serine/threonine kinase ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:28492532 NCBI chrNW_004955508:3,337,036...3,440,313
Ensembl chrNW_004955508:3,337,432...3,440,257 		JBrowse link
G Axin2 axin 2 ISO ClinVar Annotator: match by term: Malignant breast neoplasm
ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:21541676 PMID:25236910 PMID:25741868 PMID:26467025 PMID:28492532 More... NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225 		JBrowse link
G Bad BCL2 associated agonist of cell death disease_progression ISO RGD PMID:17004114 RGD:2292674 NCBI chrNW_004955422:20,795,585...20,809,039
Ensembl chrNW_004955422:20,795,676...20,809,245 		JBrowse link
G Bag1 BAG cochaperone 1 disease_progression ISO protein:increased expression:breast RGD PMID:11181661 RGD:2293888 NCBI chrNW_004955472:2,394,317...2,405,199 JBrowse link
G Bard1 BRCA1 associated RING domain 1 no_association
susceptibility
severity		 ISO DNA:polymorphisms: :p.V507M, p.C557S (human)
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
DNA:polymorphism: :p.C557S (human)
DNA:polymorphisms: :multiple (human)
protein:increased expression, altered localization:breast		 RGD
ClinVar
OMIM		 PMID:9425226 PMID:9536098 PMID:11807980 PMID:14550946 PMID:15342711 More... RGD:2315714 RGD:2315715 RGD:2315717 RGD:2315727 NCBI chrNW_004955457:1,187,942...1,258,475
Ensembl chrNW_004955457:1,187,942...1,253,803 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator disease_progression ISO RGD PMID:17626754 RGD:1643353 NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244 		JBrowse link
G Bcar1 BCAR1 scaffold protein, Cas family member severity ISO protein:increased expression:breast, cytosol (human) RGD PMID:15448007 RGD:8547748 NCBI chrNW_004955484:2,223,306...2,258,444
Ensembl chrNW_004955484:2,227,337...2,260,565 		JBrowse link
G Bcas2 BCAS2 pre-mRNA processing factor ISO DNA:amplification:cds (human) RGD PMID:12169396 RGD:9850147 NCBI chrNW_004955435:17,830,532...17,857,360
Ensembl chrNW_004955435:17,846,466...17,857,356 		JBrowse link
G Bcas3 BCAS3 microtubule associated cell migration factor ISO RGD PMID:16855396 RGD:2317828 NCBI chrNW_004955451:1,929,857...2,450,225
Ensembl chrNW_004955451:1,929,543...2,449,523 		JBrowse link
G Bcl2l1 BCL2 like 1 ISO RGD PMID:16850344 RGD:1643481 NCBI chrNW_004955422:29,254,440...29,307,104
Ensembl chrNW_004955422:29,254,216...29,308,174 		JBrowse link
G Becn1 beclin 1 disease_progression ISO RGD PMID:33292020 RGD:155641236 NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730 		JBrowse link
G Bik BCL2 interacting killer ISO RGD PMID:14633680 RGD:14394816 NCBI chrNW_004955413:28,277,727...28,294,032 JBrowse link
G Birc2 baculoviral IAP repeat containing 2 ISO RGD PMID:12218061 RGD:1643528 NCBI chrNW_004955412:5,658,322...5,685,628
Ensembl chrNW_004955412:5,659,478...5,685,114 		JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO mRNA:increased expression:breast RGD PMID:17004110 RGD:1643590 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Bmp6 bone morphogenetic protein 6 ISO mRNA:decreased expression:breast RGD PMID:17004110 RGD:1643590 NCBI chrNW_004955465:6,053,600...6,201,254
Ensembl chrNW_004955465:6,054,931...6,200,377 		JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO mRNA:increased expression:breast RGD PMID:17004110 RGD:1643590 NCBI chrNW_004955445:2,154,057...2,235,594
Ensembl chrNW_004955445:2,153,170...2,235,795 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:22703879 PMID:23399955 PMID:24033266 PMID:24448499 PMID:24728327 More... NCBI chrNW_004955510:5,812,571...5,936,312
Ensembl chrNW_004955510:5,905,008...5,936,312 		JBrowse link
G Brca1 BRCA1 DNA repair associated susceptibility ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, post-chemotherapy poor survival in | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
mRNA:allelic imbalance:lymphocyte
DNA:mutation		 ClinVar
RGD		 PMID:202008 PMID:1157798 PMID:1673748 PMID:2010458 PMID:2504116 More... RGD:1599497 RGD:2293153 NCBI chrNW_004955451:16,819,463...16,870,780
Ensembl chrNW_004955451:16,819,023...16,855,528 		JBrowse link
G Brca2 BRCA2 DNA repair associated ISO ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, invasive ductal | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar
OMIM		 PMID:234495 PMID:668580 PMID:1169856 PMID:1446381 PMID:2200631 More... NCBI chrNW_004955431:13,449,287...13,526,878
Ensembl chrNW_004955431:13,449,543...13,527,432 		JBrowse link
G Brip1 BRCA1 interacting DNA helicase 1 onset
susceptibility		 ISO DNA:missense mutations:cds:p.P47A, p.M299I (human)
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant tumor of breast
DNA:mutations:multiple (human)
DNA:snps, haplotype:introns:c.1935+977T>C, c.1473+3729A>G, c.1340+109G>A (rs11871753, rs16945628, rs2191248) (human)
DNA:snp:3' utr:C>A (rs7220740) (human)
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Malignant tumor of breast		 RGD
ClinVar
OMIM		 PMID:2455662 PMID:3375802 PMID:9536098 PMID:11301010 PMID:12565990 More... RGD:11252100 RGD:11252107 RGD:11252109 RGD:1600525 NCBI chrNW_004955451:2,705,834...2,820,610
Ensembl chrNW_004955451:2,707,793...2,818,592 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 ISO protein:decreased expression:breast, nucleus RGD PMID:16849553 RGD:2289068 NCBI chrNW_004955406:39,303,221...39,307,308
Ensembl chrNW_004955406:39,303,175...39,308,778 		JBrowse link
G Casp3 caspase 3 severity ISO protein:decreased expression:breast RGD PMID:18227733 PMID:23979166 RGD:13209143 RGD:2293092 NCBI chrNW_004955403:24,315,712...24,326,271 JBrowse link
G Casp7 caspase 7 disease_progression ISO RGD PMID:23979166 RGD:13209143 NCBI chrNW_004955431:18,685,408...18,723,221
Ensembl chrNW_004955431:18,686,190...18,723,524 		JBrowse link
G Casp8 caspase 8 ISO ClinVar Annotator: match by term: BREAST CANCER, PROTECTION AGAINST OMIM
ClinVar		 PMID:15601643 PMID:15998955 PMID:17293864 PMID:24033266 PMID:25741868 More... NCBI chrNW_004955403:322,082...348,591
Ensembl chrNW_004955403:322,555...347,053 		JBrowse link
G Casp9 caspase 9 ISO mRNA:decreased expression:breast RGD PMID:17011986 RGD:2290492 NCBI chrNW_004955527:2,613,691...2,630,217
Ensembl chrNW_004955527:2,613,683...2,629,738 		JBrowse link
G Casr calcium sensing receptor ISO ClinVar Annotator: match by term: Malignant breast neoplasm ClinVar PMID:8636323 PMID:10023897 PMID:10217111 PMID:10912749 PMID:11161843 More... NCBI chrNW_004955427:21,486,608...21,574,017
Ensembl chrNW_004955427:21,486,427...21,575,210 		JBrowse link
G Cav1 caveolin 1 no_association
disease_progression		 ISO DNA:SNPs: :multiple
OMIM:114480
DNA, protein:hypermethylation, decreased expression:promoter, breast
DNA:SNPs: :14713G>A (rs3807987), 29107T>A (rs7804372) (human)		 RGD
MouseDO		 PMID:15375584 PMID:21585620 PMID:21965771 RGD:2289105 RGD:8661766 RGD:8661769 NCBI chrNW_004955432:22,258,262...22,292,403
Ensembl chrNW_004955432:22,258,250...22,292,403 		JBrowse link
G Cbx7 chromobox 7 severity ISO human gene in a mouse model RGD PMID:25351982 RGD:11352704 NCBI chrNW_004955413:25,079,627...25,100,039
Ensembl chrNW_004955413:25,086,186...25,100,039 		JBrowse link
G Ccnb1 cyclin B1 disease_progression ISO RGD PMID:19223507 PMID:19957331 RGD:2315934 RGD:2315937 NCBI chrNW_004955446:140,661...149,500
Ensembl chrNW_004955446:140,093...149,500 		JBrowse link
G Ccnd2 cyclin D2 disease_progression ISO RGD PMID:30308939 RGD:151665105 NCBI chrNW_004955413:2,083,351...2,108,450
Ensembl chrNW_004955413:2,083,351...2,103,430 		JBrowse link
G Ccne1 cyclin E1 disease_progression ISO RGD PMID:17483245 RGD:2289231 NCBI chrNW_004955468:7,803,610...7,814,872
Ensembl chrNW_004955468:7,803,346...7,814,872 		JBrowse link
G Ccng1 cyclin G1 treatment ISO RGD PMID:23791885 RGD:151356928 NCBI chrNW_004955408:16,846,050...16,850,365 JBrowse link
G Ccr6 C-C motif chemokine receptor 6 disease_progression ISO RGD PMID:21624121 RGD:7483628 NCBI chrNW_004955439:14,921,524...14,949,493
Ensembl chrNW_004955439:14,920,601...14,924,191 		JBrowse link
G Cd55 CD55 molecule (Cromer blood group) disease_progression ISO RGD PMID:15102687 PMID:18676748 RGD:2326166 RGD:2326170 NCBI chrNW_004955406:42,773,368...42,796,205 JBrowse link
G Cdc25c cell division cycle 25C ISO protein:increased expression:breast RGD PMID:15567944 RGD:4105448 NCBI chrNW_004955418:2,114,053...2,138,513 JBrowse link
G Cdc73 cell division cycle 73 exacerbates ISO mRNA:increased expression:breast (human) RGD PMID:29221126 RGD:150539444 NCBI chrNW_004955406:30,533,919...30,665,812
Ensembl chrNW_004955406:30,533,060...30,665,812 		JBrowse link
G Cdh1 cadherin 1 ISO ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar
OMIM		 PMID:1722187 PMID:2403327 PMID:2449335 PMID:8075649 PMID:8557030 More... NCBI chrNW_004955484:7,782,409...7,861,082
Ensembl chrNW_004955484:7,782,772...7,860,967 		JBrowse link
G Cdh13 cadherin 13 ISO DNA:hypermethylation
protein:decreased expression:breast duct:		 RGD PMID:8673923 PMID:17764565 RGD:2293542 RGD:734735 NCBI chrNW_004955564:407,120...1,549,880
Ensembl chrNW_004955564:408,730...1,426,841 		JBrowse link
G Cdk1 cyclin dependent kinase 1 susceptibility
disease_progression		 ISO DNA:SNP:intron:rs16941635 (human) RGD PMID:17956886 PMID:19377877 RGD:2683526 RGD:2708463 NCBI chrNW_004955425:14,210,681...14,226,474
Ensembl chrNW_004955425:14,210,680...14,226,474 		JBrowse link
G Cdk13 cyclin dependent kinase 13 severity ISO RGD PMID:33292020 RGD:155641236 NCBI chrNW_004955460:3,590,854...3,701,148 JBrowse link
G Cdk2 cyclin dependent kinase 2 disease_progression ISO RGD PMID:18236071 RGD:2293557 NCBI chrNW_004955458:3,555,603...3,561,063
Ensembl chrNW_004955458:3,555,603...3,562,120 		JBrowse link
G Cdk4 cyclin dependent kinase 4 disease_progression ISO RGD PMID:16440198 RGD:2293576 NCBI chrNW_004955458:5,457,927...5,460,718
Ensembl chrNW_004955458:5,453,732...5,460,718 		JBrowse link
G Cdkn1b cyclin dependent kinase inhibitor 1B ISO protein:increased localization:cytoplasm
DNA:SNP		 RGD PMID:12244302 PMID:18030569 PMID:18174243 RGD:2289652 RGD:2293594 RGD:734746 NCBI chrNW_004955413:9,615,542...9,620,542
Ensembl chrNW_004955413:9,615,542...9,620,542 		JBrowse link
G Cdkn2b cyclin dependent kinase inhibitor 2B ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar NCBI chrNW_004955472:12,275,613...12,280,141
Ensembl chrNW_004955472:12,275,544...12,280,528 		JBrowse link
G Cfb complement factor B treatment ISO RGD PMID:15274022 RGD:7411730 NCBI chrNW_004955437:461,235...466,908
Ensembl chrNW_004955437:461,235...470,464 		JBrowse link
G Cga glycoprotein hormones, alpha polypeptide disease_progression ISO RGD PMID:11687975 RGD:2293635 NCBI chrNW_004955411:14,092,743...14,168,297
Ensembl chrNW_004955411:14,092,743...14,095,302 		JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 ISO mRNA:increased expression:breast (human) RGD PMID:28486105 RGD:153323299 NCBI chrNW_004955413:4,191,619...4,228,225
Ensembl chrNW_004955413:4,191,619...4,228,225 		JBrowse link
G Chek2 checkpoint kinase 2 susceptibility ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast
DNA:loss of heterozygosity
DNA:deletion: ;1100delC
DNA:missense mutations:p.I157T and p.S428F		 ClinVar
RGD		 PMID:2936834 PMID:3313277 PMID:9536098 PMID:10617473 PMID:11053450 More... RGD:1599601 RGD:2289703 RGD:2289706 NCBI chrNW_004955455:2,969,113...3,008,004
Ensembl chrNW_004955455:2,969,270...3,003,173 		JBrowse link
G Chi3l1 chitinase 3 like 1 severity ISO protein:increased secretion:serum (human) RGD PMID:12889595 RGD:4892603 NCBI chrNW_004955406:39,195,101...39,201,808
Ensembl chrNW_004955406:39,191,073...39,202,020 		JBrowse link
G Clu clusterin disease_progression ISO DNA:snp:promoter:g.27611345C>G (rs9331888) (human) RGD PMID:22037783 RGD:8963167 NCBI chrNW_004955403:50,160,598...50,175,876
Ensembl chrNW_004955403:50,160,598...50,175,876 		JBrowse link
G Comt catechol-O-methyltransferase disease_progression
no_association
susceptibility		 ISO DNA:polymorphism: :p.V158M
mRNA:increased expression:breast		 RGD PMID:15285606 PMID:17429315 PMID:17507616 PMID:17562079 RGD:2289710 RGD:2289712 RGD:2289715 RGD:2289721 NCBI chrNW_004955442:18,130,282...18,152,153
Ensembl chrNW_004955442:18,130,987...18,137,412 		JBrowse link
G Csf1 colony stimulating factor 1 ISO RGD PMID:18172291 RGD:2293639 NCBI chrNW_004955435:13,404,236...13,423,059
Ensembl chrNW_004955435:13,404,508...13,424,247 		JBrowse link
G Csf1r colony stimulating factor 1 receptor disease_progression
treatment		 ISO RGD PMID:14734466 PMID:25385645 RGD:150524304 RGD:2293711 NCBI chrNW_004955415:4,434,486...4,462,505
Ensembl chrNW_004955415:4,434,453...4,461,751 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 ISO RGD PMID:11827167 RGD:727632 NCBI chrNW_004955597:326,601...397,112 JBrowse link
G Ctcf CCCTC-binding factor severity ISO protein:alternative form, increased expression:breast tumor (human) RGD PMID:19737964 RGD:151356756 NCBI chrNW_004955484:9,041,226...9,092,924
Ensembl chrNW_004955484:9,042,524...9,064,927 		JBrowse link
G Ctla4 cytotoxic T-lymphocyte associated protein 4 ISO DNA:SPNs:multiple:
protein:increased expression:serum:		 RGD PMID:17825114 PMID:20482250 RGD:7411684 RGD:7421502 NCBI chrNW_004955457:11,028,707...11,034,898
Ensembl chrNW_004955457:11,028,698...11,073,460 		JBrowse link
G Ctsb cathepsin B ISO protein:increased expression:breast carcinoma, cytosol (human) RGD PMID:9508185 RGD:2315523 NCBI chrNW_004955403:53,086,236...53,100,217
Ensembl chrNW_004955403:53,085,574...53,093,809 		JBrowse link
G Ctsd cathepsin D ISO human gene in a mouse model RGD PMID:12140763 RGD:1547890 NCBI chrNW_004955422:13,576,315...13,584,267
Ensembl chrNW_004955422:13,576,202...13,584,298 		JBrowse link
G CUNH11orf65 chromosome unknown C11orf65 homolog ISO ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:1160401 PMID:2166257 PMID:4012663 PMID:6504056 PMID:7792600 More... NCBI chrNW_004955412:10,533,174...10,567,364
Ensembl chrNW_004955412:10,533,441...10,567,612 		JBrowse link
G Ddr1 discoidin domain receptor tyrosine kinase 1 ISO mRNA, protein:increased expression:breast cancer tissue (human) RGD PMID:31578591 RGD:151347435 NCBI chrNW_004955583:820,893...838,515
Ensembl chrNW_004955583:820,931...841,654 		JBrowse link
G Ddx3x DEAD-box helicase 3 X-linked exacerbates ISO protein:increased expression:breast, nucleus (human) RGD PMID:28761359 RGD:151356502 NCBI chrNW_004955565:1,387,043...1,403,624
Ensembl chrNW_004955565:1,386,973...1,404,220 		JBrowse link
G Dicer1 dicer 1, ribonuclease III ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 PMID:32714280 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 disease_progression ISO RGD PMID:20167860 RGD:155641260 NCBI chrNW_004955416:7,807,049...7,816,346
Ensembl chrNW_004955416:7,807,049...7,817,420 		JBrowse link
G Dusp1 dual specificity phosphatase 1 disease_progression
severity		 ISO DNA:hypermethylation:promoter
protein:increased expression:mammary gland
protein:increased expression:T cell		 RGD PMID:9724088 PMID:12618338 PMID:19417026 PMID:22333693 RGD:2298697 RGD:7495809 RGD:7495850 RGD:7495851 NCBI chrNW_004955408:25,481,294...25,484,381
Ensembl chrNW_004955408:25,481,294...25,484,381 		JBrowse link
G Dusp6 dual specificity phosphatase 6 ISO protein:increased expression:mammary gland RGD PMID:12618338 RGD:7495809 NCBI chrNW_004955405:26,662,018...26,666,314
Ensembl chrNW_004955405:26,662,018...26,666,314 		JBrowse link
G Ebag9 estrogen receptor binding site associated antigen 9 ISO DNA:amplification RGD PMID:12160478 RGD:2289857 NCBI chrNW_004955417:16,941,035...16,958,876
Ensembl chrNW_004955417:16,936,622...16,958,876 		JBrowse link
G Egfr epidermal growth factor receptor ISO mRNA:increased expression:breast RGD PMID:17465220 RGD:2289949 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Egr1 early growth response 1 ISO protein:decreased expression:tumor (human)
protein:decreased expression:tumor (rat)		 RGD PMID:9212230 RGD:5131943 NCBI chrNW_004955418:2,001,509...2,005,269
Ensembl chrNW_004955418:2,002,699...2,005,007 		JBrowse link
G Eif3h eukaryotic translation initiation factor 3 subunit H ISO DNA:amplification RGD PMID:10362802 RGD:2289902 NCBI chrNW_004955417:22,757,781...22,846,349
Ensembl chrNW_004955417:22,754,395...22,846,618 		JBrowse link
G Eng endoglin treatment ISO human tumor in mouse model RGD PMID:11691802 RGD:7248784 NCBI chrNW_004955419:818,797...853,319
Ensembl chrNW_004955419:818,932...852,694 		JBrowse link
G Epo erythropoietin ISO protein:increased expression:breast: RGD PMID:12118093 RGD:11041669 NCBI chrNW_004955573:203,875...206,078
Ensembl chrNW_004955573:203,441...206,355 		JBrowse link
G Epor erythropoietin receptor ISO protein:increased expression:breast: RGD PMID:12118093 RGD:11041669 NCBI chrNW_004955495:2,293,587...2,299,302
Ensembl chrNW_004955495:2,293,540...2,298,715 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO OMIM:114480 MouseDO NCBI chrNW_004955451:14,442,816...14,456,009
Ensembl chrNW_004955451:14,442,816...14,459,379 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit susceptibility ISO DNA:snp:3' utr:c.8092C>A (human) RGD PMID:15958648 RGD:13207317 NCBI chrNW_004955555:2,393,510...2,430,180
Ensembl chrNW_004955555:2,393,278...2,406,582 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit susceptibility ISO DNA:haplotype:cds:6540G>A(D312N),18880A>C(p.K751Q)(human) RGD PMID:15598761 RGD:12880387 NCBI chrNW_004955555:2,355,005...2,369,599
Ensembl chrNW_004955555:2,355,005...2,369,599 		JBrowse link
G Espl1 extra spindle pole bodies like 1, separase ISO OMIM:114480 MouseDO NCBI chrNW_004955458:530,269...553,919
Ensembl chrNW_004955458:530,797...553,985 		JBrowse link
G Esr1 estrogen receptor 1 no_association
susceptibility
disease_progression
treatment		 ISO DNA:SNP: :908A>G (p.K303R) (human)
DNA:SNP:exon:2014G>A (human)
DNA:SNPs, haplotypes:promoter, exon
DNA:SNPs: :rs2234693, rs9340799 (human)
DNA:amplification		 RGD
OMIM		 PMID:15034868 PMID:15604249 PMID:19011961 PMID:19320640 PMID:19636371 More... RGD:8552978 RGD:8552979 RGD:8552980 RGD:8552981 RGD:8552982 RGD:8553053 NCBI chrNW_004955439:9,588,631...9,953,606
Ensembl chrNW_004955439:9,588,201...9,963,353 		JBrowse link
G Esr2 estrogen receptor 2 treatment
susceptibility
no_association		 ISO associated with Benign Breast Disease;DNA:snp:3' utr:*5772A>G (rs8018687) (human)
DNA:silent mutation:exon:g.1176C>G (rs1256054) (human)
DNA:snps, haplotype:multiple (human)
DNA:snp:promoter:g.-13950C>T (rs2987983) (human)
DNA:snps:multiple (human)
DNA:snps, haplotype:exons:g.1082G>A, g.1730G>A, A>G (rs1256049, rs4986938, rs928554) (human)
DNA:snps:intron, exon:g.14206C>T, g.33390C>G (rs1256054) (human)
DNA:repeat:intron:IVS5(CA)9-31 (human)
DNA:snps:5' utr, exon, 3' utr:-12214C>T (rs1271572), A>G (rs928554), A>G (rs4986938) (human)
DNA:repeat:3' utr:(CA)10-27 (human)		 RGD PMID:14633679 PMID:15604249 PMID:16261413 PMID:16808847 PMID:17904846 More... RGD:7364946 RGD:8552977 RGD:8552978 RGD:8693347 RGD:8693380 RGD:8693382 RGD:8694090 RGD:8694096 RGD:8694103 RGD:8694110 RGD:8694116 NCBI chrNW_004955466:5,587,003...5,644,765
Ensembl chrNW_004955466:5,575,088...5,638,946 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:28492532 NCBI chrNW_004955417:23,798,044...24,067,759
Ensembl chrNW_004955417:23,798,393...24,067,100 		JBrowse link
G F10 coagulation factor X ISO DNA:SNP: :rs3093261 (human) RGD PMID:25407022 RGD:10449101 NCBI chrNW_004955404:666,142...682,598
Ensembl chrNW_004955404:666,165...682,538 		JBrowse link
G F11r F11 receptor disease_progression ISO RGD PMID:19533747 RGD:7488915 NCBI chrNW_004955468:12,764,968...12,785,956
Ensembl chrNW_004955468:12,765,874...12,785,929 		JBrowse link
G F5 coagulation factor V no_association ISO DNA:SNPs: :rs6025 (human)
DNA:SNPs: :multiple		 RGD PMID:25407022 RGD:10449101 NCBI chrNW_004955462:7,695,004...7,757,832
Ensembl chrNW_004955462:7,694,939...7,757,463 		JBrowse link
G F7 coagulation factor VII ISO mRNA:increased expression:breast (human) RGD PMID:19996301 RGD:11049547 NCBI chrNW_004955404:685,170...692,797
Ensembl chrNW_004955404:680,594...693,665 		JBrowse link
G Fanca FA complementation group A ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:24728327 PMID:25741868 PMID:28492532 NCBI chrNW_004955541:3,272,936...3,320,229
Ensembl chrNW_004955541:3,273,022...3,320,052 		JBrowse link
G Fancb FA complementation group B ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 PMID:33558524 NCBI chrNW_004955519:3,337,138...3,364,963
Ensembl chrNW_004955519:3,343,446...3,363,814 		JBrowse link
G Fancc FA complementation group C ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:7492758 PMID:7689011 PMID:8081385 PMID:08128956 PMID:08348157 More... NCBI chrNW_004955422:22,031,825...22,246,478
Ensembl chrNW_004955422:22,032,258...22,247,044 		JBrowse link
G Fancd2 FA complementation group D2 ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:24728327 PMID:25741868 PMID:28492532 PMID:33558524 NCBI chrNW_004955561:1,460,080...1,538,026
Ensembl chrNW_004955561:1,464,869...1,538,045 		JBrowse link
G Fance FA complementation group E ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955437:3,369,127...3,382,072
Ensembl chrNW_004955437:3,369,042...3,382,783 		JBrowse link
G Fancf FA complementation group F ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:24728327 PMID:25741868 PMID:28492532 NCBI chrNW_004955476:3,067,491...3,069,637
Ensembl chrNW_004955476:3,067,689...3,068,728 		JBrowse link
G Fanci FA complementation group I ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 PMID:33558524 NCBI chrNW_004955416:15,788,812...15,857,933
Ensembl chrNW_004955416:15,788,922...15,853,480 		JBrowse link
G Fas Fas cell surface death receptor susceptibility ISO DNA:polymorphism:promoter:-1377G>A RGD PMID:17183065 RGD:2290054 NCBI chrNW_004955425:3,961,671...3,987,513
Ensembl chrNW_004955425:3,961,013...3,987,455 		JBrowse link
G Fen1 flap structure-specific endonuclease 1 disease_progression ISO DNA,mRNA:hypomethylation,increased expression:promoter,breast RGD PMID:19010819 RGD:6484520 NCBI chrNW_004955511:5,918,667...5,922,506
Ensembl chrNW_004955511:5,918,667...5,922,506 		JBrowse link
G Fgf2 fibroblast growth factor 2 disease_progression
susceptibility		 ISO protein:increased expression:mammary gland fluid/secretion RGD PMID:12184408 PMID:14715109 RGD:8655549 RGD:8655587 NCBI chrNW_004955428:17,840,554...17,894,779
Ensembl chrNW_004955428:17,840,628...17,894,773 		JBrowse link
G Fgf8 fibroblast growth factor 8 ISO mRNA:increased expression:breast epithelium:significant increase in both the number of tumors expressing FGF8 (p=0.019) and the absolute expression level (p=0.031) RGD PMID:10023681 RGD:2289344 NCBI chrNW_004955485:8,517,412...8,521,732
Ensembl chrNW_004955485:8,517,412...8,521,770 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 exacerbates ISO sporadic postmenopausal breast cancer; DNA:SNP:intron:dbSNP ID rs1219648, p=1.1x10-10
DNA:SNP:intron:dbSNP ID rs2981582, p=2X10-76		 RGD PMID:17529967 PMID:17529973 PMID:23185502 RGD:155663674 RGD:2289657 RGD:2289658 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO protein:altered localization:even cytoplasmic-nuclear distribution to primarily nuclear RGD PMID:11329138 RGD:2289867 NCBI chrNW_004955514:1,030,244...1,038,590
Ensembl chrNW_004955514:1,025,600...1,038,590 		JBrowse link
G Fh fumarate hydratase ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar NCBI chrNW_004955406:10,535,801...10,558,649
Ensembl chrNW_004955406:10,535,323...10,561,627 		JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 ISO protein:increased expression:mammary carcinoma cells RGD PMID:10604730 RGD:2289937 NCBI chrNW_004955497:7,653,309...7,831,737
Ensembl chrNW_004955497:7,653,248...7,831,472 		JBrowse link
G Foxa1 forkhead box A1 disease_progression ISO RGD PMID:27524420 RGD:151665821 NCBI chrNW_004955409:23,598,127...23,599,827
Ensembl chrNW_004955409:23,598,127...23,599,461 		JBrowse link
G Fubp1 far upstream element binding protein 1 exacerbates ISO protein:increased expression:breast (human) RGD PMID:27157613 RGD:151361193 NCBI chrNW_004955423:15,245,645...15,278,628
Ensembl chrNW_004955423:15,245,610...15,278,628 		JBrowse link
G Ghr growth hormone receptor ISO protein:increased expression:serum:cases versus controls (p<0.01) RGD PMID:17287408 RGD:2301716 NCBI chrNW_004955426:26,553,509...26,873,619
Ensembl chrNW_004955426:26,689,581...26,871,684 		JBrowse link
G Ghrh growth hormone releasing hormone ISO protein:increased expression:tumor:colloid, lobular, and infiltrating ductal carcinomas RGD PMID:1973621 RGD:2289972 NCBI chrNW_004955422:24,481,246...24,490,529 JBrowse link
G Gnrh1 gonadotropin releasing hormone 1 severity ISO DNA:SNP:CDS:16Ser allele associated with decreased disease free survival alone (p=0.05) or in combination with the insLQ allele of LHCGR (p=0.001) RGD PMID:17692113 RGD:2292541 NCBI chrNW_004955403:48,341,731...48,346,595
Ensembl chrNW_004955403:48,343,597...48,346,595 		JBrowse link
G Gpx1 glutathione peroxidase 1 susceptibility ISO DNA:repeat:CDS: (human) RGD PMID:14744747 RGD:152995457 NCBI chrNW_004955532:1,298,336...1,298,830 JBrowse link
G Grb2 growth factor receptor bound protein 2 treatment ISO RGD PMID:17372910 RGD:13504751 NCBI chrNW_004955553:2,186,590...2,258,964
Ensembl chrNW_004955553:2,186,590...2,259,456 		JBrowse link
G Gstp1 glutathione S-transferase pi 1 treatment ISO DNA:SNP:cds:p.I105V (rs1695) (human) RGD PMID:23812950 RGD:10755330 NCBI chrNW_004955422:17,914,228...17,916,918
Ensembl chrNW_004955422:17,914,305...17,917,428 		JBrowse link
G Hfe homeostatic iron regulator susceptibility
no_association		 ISO DNA:missense mutation:cds:p.C282Y (human)
DNA:missense mutations, haplotype:cds:p.H63D, p.S65C, p.C282Y (human)		 RGD PMID:14973098 PMID:15894659 RGD:8694348 RGD:8694349 NCBI chrNW_004955483:933,269...941,070
Ensembl chrNW_004955483:932,352...941,143 		JBrowse link
G Hgf hepatocyte growth factor ISO OMIM:114480 MouseDO NCBI chrNW_004955410:4,114,280...4,181,953
Ensembl chrNW_004955410:4,114,778...4,182,058 		JBrowse link
G Hmmr hyaluronan mediated motility receptor susceptibility ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to ClinVar
OMIM		 PMID:25741868 NCBI chrNW_004955408:16,865,066...16,895,918
Ensembl chrNW_004955408:16,865,175...16,898,328 		JBrowse link
G Icam1 intercellular adhesion molecule 1 ISO protein:increased expression:serum: RGD PMID:7686390 RGD:11520780 NCBI chrNW_004955495:1,561,464...1,573,282
Ensembl chrNW_004955495:1,561,714...1,574,755 		JBrowse link
G Ifng interferon gamma susceptibility ISO DNA:repeats:intron: RGD PMID:15900487 RGD:8157615 NCBI chrNW_004955458:14,643,333...14,648,020
Ensembl chrNW_004955458:14,643,313...14,648,045 		JBrowse link
G Igf1 insulin like growth factor 1 susceptibility ISO protein:increased expression:serum (rat) RGD PMID:17584969 RGD:2315650 NCBI chrNW_004955405:37,505,830...37,582,152
Ensembl chrNW_004955405:37,512,201...37,582,152 		JBrowse link
G Igf1r insulin like growth factor 1 receptor ISO protein: increased expression RGD PMID:21047775 RGD:7242794 NCBI chrNW_004955416:26,101,090...26,382,660
Ensembl chrNW_004955416:26,102,628...26,382,666 		JBrowse link
G Igf2 insulin like growth factor 2 ISO RGD PMID:18719053 RGD:2311512 NCBI chrNW_004955422:13,880,525...13,907,963
Ensembl chrNW_004955422:13,880,471...13,888,566 		JBrowse link
G Igfbp1 insulin like growth factor binding protein 1 no_association ISO higher serum expression in cases vs controls but association not significant in multivariate analysis
protein:decreased expression:serum:in patients with breast cancer versus benign breast disease (p=0.001)		 RGD PMID:10069662 PMID:17287408 RGD:2301715 RGD:2301716 NCBI chrNW_004955456:6,810,461...6,814,944
Ensembl chrNW_004955456:6,810,056...6,815,685 		JBrowse link
G Igfbp3 insulin like growth factor binding protein 3 no_association ISO protein:decreased expression:serum
DNA:SNP:promoter:no association with rs2854744, 677 cases and 834 controls from the Nurses' Health Study
DNA:SNP:promoter,CDS:variant allele of multiple SNPs including rs2854744, associated with increased risk singly and in combination, 1,193 patients and 1,310 control Chinese women in Shanghai		 RGD PMID:10069662 PMID:12925957 PMID:15298948 PMID:17287408 RGD:2290009 RGD:2290011 RGD:2301715 RGD:2301716 NCBI chrNW_004955456:6,795,560...6,802,147
Ensembl chrNW_004955456:6,795,604...6,800,845 		JBrowse link
G Igfbp6 insulin like growth factor binding protein 6 no_association ISO protein:decreased expression:serum:in patients with breast cancer versus benign breast disease (p=0.016)
lower serum expression in cases vs controls but association not significant in multivariate analysis		 RGD PMID:10069662 PMID:17287408 RGD:2301715 RGD:2301716 NCBI chrNW_004955458:377,929...382,109
Ensembl chrNW_004955458:377,929...382,567 		JBrowse link
G Igfbp7 insulin like growth factor binding protein 7 ameliorates ISO protein:decreased expression:breast (human) RGD PMID:34606580 RGD:401960874 NCBI chrNW_004955447:14,048,834...14,110,264
Ensembl chrNW_004955447:14,047,732...14,108,414 		JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta susceptibility ISO DNA:SNPs: :multiple RGD PMID:22562547 RGD:6484541 NCBI chrNW_004955536:611,965...658,647
Ensembl chrNW_004955536:612,774...658,647 		JBrowse link
G Il13ra2 interleukin 13 receptor subunit alpha 2 treatment ISO RGD PMID:11748276 PMID:17438063 RGD:8549514 RGD:8549557 NCBI chrNW_004955490:708,144...758,195
Ensembl chrNW_004955490:709,446...758,272 		JBrowse link
G Il18 interleukin 18 no_association ISO DNA:SNP:promoter:-137G>C (rs187238) (human)
protein:increased expression:serum
DNA:SNP:promoter:-607C>A (rs1946518) (human)		 RGD PMID:12209760 PMID:19152241 RGD:8655866 RGD:8655899 NCBI chrNW_004955412:13,807,361...13,826,007
Ensembl chrNW_004955412:13,806,553...13,825,634 		JBrowse link
G Il1b interleukin 1 beta susceptibility ISO DNA:polymorphism:promoter:-31T>C (human) RGD PMID:21653279 RGD:7401222 NCBI chrNW_004955470:1,486,936...1,491,888
Ensembl chrNW_004955470:1,486,967...1,491,947 		JBrowse link
G Il6 interleukin 6 susceptibility ISO DNA:polymorphism::rs2069832(human) RGD PMID:17594514 RGD:7829720 NCBI chrNW_004955410:25,079,835...25,084,390 JBrowse link
G Insr insulin receptor severity ISO protein:increased expression:tumor:higher expression associated with favorable prognostic markers and increased disease-free survival (P=0.027)
protein:increased expression:tumor:four-fold higher vs normal breast tissue		 RGD PMID:8518410 PMID:17221153 RGD:2290447 RGD:2290465 NCBI chrNW_004955563:1,867,400...2,011,845
Ensembl chrNW_004955563:1,867,400...2,009,149 		JBrowse link
G Itga1 integrin subunit alpha 1 ISO protein:decreased expression:tumor:down-regulated in tumors lacking a basement membrane RGD PMID:9408292 RGD:2302120 NCBI chrNW_004955446:14,439,571...14,582,236
Ensembl chrNW_004955446:14,446,300...14,577,605 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO protein:increased activation:tumor: 50% of cases showed activated protein present in mitotic cells at the invasive front, associated with tumor cell proliferation and microvessel density RGD PMID:16733206 RGD:2290479 NCBI chrNW_004955464:1,107,598...1,110,326 JBrowse link
G Kat2b lysine acetyltransferase 2B severity ISO mRNA:increased expression:breast (human) RGD PMID:22199269 RGD:9586031 NCBI chrNW_004955430:12,109,493...12,196,102
Ensembl chrNW_004955430:12,128,069...12,198,117 		JBrowse link
G Kat5 lysine acetyltransferase 5 severity ISO mRNA:altered expression:breast (human) RGD PMID:22199269 RGD:9586031 NCBI chrNW_004955422:19,557,498...19,565,044
Ensembl chrNW_004955422:19,557,498...19,565,036 		JBrowse link
G Kat7 lysine acetyltransferase 7 severity ISO protein:increased expression:breast (human) RGD PMID:21040551 RGD:9681004 NCBI chrNW_004955451:11,770,201...11,802,992
Ensembl chrNW_004955451:11,770,201...11,802,992 		JBrowse link
G Kdm1a lysine demethylase 1A severity ISO protein:increased expression:breast (rat)
mRNA:increased expression:breast (human)		 RGD PMID:22199269 PMID:23516587 RGD:9586031 RGD:9588313 NCBI chrNW_004955452:3,044,042...3,104,650
Ensembl chrNW_004955452:3,044,264...3,104,418 		JBrowse link
G Kdm3b lysine demethylase 3B severity ISO mRNA:decreased expression:breast (human) RGD PMID:23266085 RGD:9586731 NCBI chrNW_004955418:2,026,254...2,098,223
Ensembl chrNW_004955418:2,026,254...2,098,223 		JBrowse link
G Kdm4a lysine demethylase 4A severity ISO mRNA:altered expression:breast (human) RGD PMID:22199269 RGD:9586031 NCBI chrNW_004955537:3,199,394...3,255,945
Ensembl chrNW_004955537:3,199,394...3,255,945 		JBrowse link
G Kdm4b lysine demethylase 4B severity
treatment		 ISO mRNA:decreased expression:breast (human)
human gene in a mouse model		 RGD PMID:21445275 RGD:9587754 NCBI chrNW_004955495:4,019,066...4,101,577
Ensembl chrNW_004955495:4,018,770...4,114,604 		JBrowse link
G Kdm4c lysine demethylase 4C severity ISO DNA:snp:cds:p.D396N (rs2296067) (human) RGD PMID:24952432 RGD:9587745 NCBI chrNW_004955434:10,646,524...11,000,589
Ensembl chrNW_004955434:10,685,704...11,000,644 		JBrowse link
G Kdm5a lysine demethylase 5A severity ISO mRNA:decreased expression:breast (human) RGD PMID:23266085 RGD:9586731 NCBI chrNW_004955454:6,774,308...6,865,047
Ensembl chrNW_004955454:6,774,476...6,865,033 		JBrowse link
G Kdm5b lysine demethylase 5B treatment ISO human gene in a mouse model RGD PMID:21369698 RGD:9587774 NCBI chrNW_004955406:38,755,220...38,823,094
Ensembl chrNW_004955406:38,755,220...38,823,088 		JBrowse link
G Kdm5c lysine demethylase 5C severity ISO mRNA:altered expression:breast (human) RGD PMID:22199269 RGD:9586031 NCBI chrNW_004955475:243,666...278,064
Ensembl chrNW_004955475:243,666...278,627 		JBrowse link
G Kdm6a lysine demethylase 6A severity ISO mRNA:increased expression:breast (human) RGD PMID:22199269 PMID:23266085 RGD:9586031 RGD:9586731 NCBI chrNW_004955516:3,151,350...3,346,832
Ensembl chrNW_004955516:3,149,948...3,346,832 		JBrowse link
G Kdm8 lysine demethylase 8 ISO mRNA:increased expression:breast (human) RGD PMID:20457893 RGD:9587844 NCBI chrNW_004955493:5,437,344...5,462,849
Ensembl chrNW_004955493:5,437,090...5,462,294 		JBrowse link
G Kdr kinase insert domain receptor ISO protein:increased expression, increased activity:tumor:increased activated KDR in mammary carcinomas vs adjacent normal tissues RGD PMID:10371349 RGD:2291951 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583 		JBrowse link
G Kif1b kinesin family member 1B ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:18334619 PMID:24469107 PMID:24694336 PMID:25741868 PMID:28492532 NCBI chrNW_004955486:3,366,791...3,503,845
Ensembl chrNW_004955486:3,370,596...3,489,052 		JBrowse link
G Kiss1r KISS1 receptor severity ISO mRNA:increased expression:tumor:high levels of both KISS1 and KISS1R in ERalpha+ tumors treated with tamoxifen associated with shorter relapse-free survival RGD PMID:17914099 RGD:2292123 NCBI chrNW_004955495:6,918,632...6,921,891 JBrowse link
G Klc1 kinesin light chain 1 ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to ClinVar PMID:12023982 NCBI chrNW_004955538:2,462,491...2,503,398
Ensembl chrNW_004955538:2,470,473...2,503,398 		JBrowse link
G Kmt2b lysine methyltransferase 2B severity ISO mRNA:increased expression:breast (human) RGD PMID:24491801 RGD:9588564 NCBI chrNW_004955468:2,813,183...2,834,326
Ensembl chrNW_004955468:2,813,496...2,834,326 		JBrowse link
G Kmt2d lysine methyltransferase 2D ISO mRNA:decreased expression:breast (human) RGD PMID:23754336 RGD:9588236 NCBI chrNW_004955500:7,850,782...7,891,703
Ensembl chrNW_004955500:7,853,292...7,886,067 		JBrowse link
G Kmt2e lysine methyltransferase 2E (inactive) ISO mRNA:decreased expression:breast (human) RGD PMID:23754336 RGD:9588236 NCBI chrNW_004955410:9,714,587...9,808,021 JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Breast cancer, somatic OMIM
ClinVar		 PMID:2547513 PMID:3627975 PMID:15696205 PMID:17332249 PMID:21063026 More... NCBI chrNW_004955413:20,298,852...20,328,756
Ensembl chrNW_004955413:20,298,824...20,328,758 		JBrowse link
G Ksr1 kinase suppressor of ras 1 disease_progression ISO RGD PMID:24909178 RGD:127229932 NCBI chrNW_004955481:5,768,166...5,913,557
Ensembl chrNW_004955481:5,770,911...5,913,240 		JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 severity ISO mRNA:decreased expression:breast (human) RGD PMID:21837478 RGD:9588606 NCBI chrNW_004955445:13,621,007...13,645,809
Ensembl chrNW_004955445:13,621,791...13,645,799 		JBrowse link
G Lep leptin ISO protein:increased expression:serum RGD PMID:16019138 RGD:8694425 NCBI chrNW_004955479:9,266,604...9,276,568
Ensembl chrNW_004955479:9,274,516...9,279,472 		JBrowse link
G Letmd1 LETM1 domain containing 1 ISO protein:increased expression:breast RGD PMID:19208263 RGD:2314917 NCBI chrNW_004955547:1,574,210...1,586,432
Ensembl chrNW_004955547:1,574,265...1,582,786 		JBrowse link
G Lhcgr luteinizing hormone/choriogonadotropin receptor onset
severity		 ISO DNA:insertion:CDS:insLQ allele associated with earlier onset (51.9 vs 60.2 yrs, p=0.03)
DNA:SNP:CDS:rs2293275, 312Asn allele associated with a slight increase in risk in two patient cohorts (p=0.03 and p=0.001)
DNA:insertion:CDS:insLQ allele associated with decreased disease free survival alone (p=0.007) or in combination with the 16Ser allele of GNRH1 (p=0.001)		 RGD PMID:12679452 PMID:17692113 PMID:17709176 RGD:2292539 RGD:2292541 RGD:2292545 NCBI chrNW_004955441:15,205,883...15,263,617
Ensembl chrNW_004955441:15,207,252...15,242,914 		JBrowse link
G Lnpep leucyl and cystinyl aminopeptidase ISO protein:increased expression:breast RGD PMID:10508127 RGD:2314923 NCBI chrNW_004955418:15,631,703...15,718,711
Ensembl chrNW_004955418:15,640,143...15,718,711 		JBrowse link
G LOC102009223 cytochrome P450 1B1 susceptibility ISO DNA:snp:cds:p.A119S (human) RGD PMID:10739169 RGD:7829734 NCBI chrNW_004955441:5,803,397...5,812,131
Ensembl chrNW_004955441:5,803,032...5,812,131 		JBrowse link
G LOC102010322 cytochrome P450 1A2 ISO DNA:SNP::differences in allele and genotype distribution for CYP1A2*1F polymorphism (p=0.0000005) RGD PMID:18497059 RGD:2301045 NCBI chrNW_004955450:3,165,107...3,171,894
Ensembl chrNW_004955450:3,165,106...3,171,942 		JBrowse link
G LOC102010850 cytochrome P450 1A1 no_association ISO DNA:SNP:3' utr:6235T>C (human)
DNA:SNP::rs4646903 (human)
DNA:SNP: :p.I462V (rs1048943) (human)
DNA:polymorphisms: :multiple
DNA:transitions:exon, 3' utr:4889A>G, 6235T>C (human)		 RGD PMID:9426059 PMID:12496044 PMID:17603290 PMID:18497059 PMID:21418988 RGD:2301045 RGD:8552792 RGD:8552794 RGD:8552799 RGD:8552810 NCBI chrNW_004955450:3,183,958...3,189,488
Ensembl chrNW_004955450:3,183,750...3,189,488 		JBrowse link
G LOC102011010 steroid 17-alpha-hydroxylase/17,20 lyase ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to ClinVar PMID:1740503 PMID:10720067 PMID:14747197 PMID:16121340 PMID:17192295 More... NCBI chrNW_004955485:7,615,132...7,652,899
Ensembl chrNW_004955485:7,645,363...7,650,658 		JBrowse link
G LOC102012303 NADH-cytochrome b5 reductase 3 susceptibility ISO DNA:polymporhism:(rs8190370)(human) RGD PMID:25225034 RGD:11040537 NCBI chrNW_004955413:27,971,140...27,979,905
Ensembl chrNW_004955413:27,969,949...27,979,909 		JBrowse link
G LOC102023780 aromatase treatment ISO DNA:SNP:cds:rs700518 (human)
DNA:repeat::(TTTA)10 (human)		 RGD PMID:7053713 PMID:16875543 PMID:23643682 RGD:2301046 RGD:7257707 RGD:7257716 NCBI chrNW_004955409:3,198,622...3,313,072
Ensembl chrNW_004955409:3,266,233...3,313,142 		JBrowse link
G Lrrc41 leucine rich repeat containing 41 ISO ClinVar Annotator: match by term: RAD54L-related condition ClinVar PMID:25741868 NCBI chrNW_004955464:11,976,259...11,996,588
Ensembl chrNW_004955464:11,976,259...11,996,588 		JBrowse link
G Lsp1 lymphocyte specific protein 1 susceptibility ISO DNA:SNPs: :rs569550,rs592373(human)
DNA:SNP:intron:rs3817198T>C(human)		 RGD PMID:21127985 PMID:26191300 RGD:11063875 RGD:407571686 NCBI chrNW_004955422:13,664,594...13,697,682
Ensembl chrNW_004955422:13,664,129...13,700,126 		JBrowse link
G Lta lymphotoxin alpha susceptibility ISO DNA:polymorphism, haplotype: :252A>G (human)
DNA:SNP:intron		 RGD PMID:11841482 PMID:18409070 RGD:8548786 RGD:8548791 NCBI chrNW_004955437:114,216...116,003
Ensembl chrNW_004955437:114,640...115,529 		JBrowse link
G Manf mesencephalic astrocyte derived neurotrophic factor susceptibility ISO RGD PMID:8971156 RGD:1599219 NCBI chrNW_004955532:3,075,195...3,077,505
Ensembl chrNW_004955532:3,075,110...3,079,116 		JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO protein:increased expression, increased activity:tumor RGD PMID:10216485 RGD:2292627 NCBI chrNW_004955450:9,181,851...9,205,277
Ensembl chrNW_004955450:9,181,851...9,239,648 		JBrowse link
G Map2k2 mitogen-activated protein kinase kinase 2 ISO protein:increased expression, increased activity:tumor RGD PMID:10216485 RGD:2292627 NCBI chrNW_004955495:4,695,239...4,718,380
Ensembl chrNW_004955495:4,695,768...4,722,098 		JBrowse link
G Map2k3 mitogen-activated protein kinase kinase 3 ISO protein:increased protein:mammary gland RGD PMID:12618338 PMID:24233520 RGD:7495808 RGD:7495809 NCBI chrNW_004955577:1,225,033...1,249,510
Ensembl chrNW_004955577:1,237,287...1,248,541 		JBrowse link
G Map2k7 mitogen-activated protein kinase kinase 7 exacerbates ISO mRNA:splice variant:exon 2: (human) RGD PMID:21317887 PMID:32601196 RGD:155230826 RGD:155249848 NCBI chrNW_004955563:1,352,638...1,361,598
Ensembl chrNW_004955563:1,352,638...1,361,598 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 disease_progression ISO mRNA:increased expression:tumor:increased expression in luminal A and normal-like vs other molecular subtypes, (p=5.2x10e-5)
DNA:SNP:linkage disequilibrium block:minor allele associated with reduced risk of lymph node involvement at diagnosis (p=0.044)
DNA:SNP:linkage disequilibrium block:minor allele of SNP rs889312, p=7x10e-20		 RGD PMID:17529967 PMID:17997823 PMID:18036273 RGD:2289657 RGD:2293356 RGD:2293357 NCBI chrNW_004955446:11,022,091...11,090,136
Ensembl chrNW_004955446:11,021,971...11,090,136 		JBrowse link
G Map3k8 mitogen-activated protein kinase kinase kinase 8 ISO RGD PMID:10490831 RGD:151356925 NCBI chrNW_004955429:21,717,153...21,739,349
Ensembl chrNW_004955429:21,716,958...21,741,585 		JBrowse link
G Mapk1 mitogen-activated protein kinase 1 ISO protein:increased expression, increased phosphorylation:breast RGD PMID:15928662 RGD:2314939 NCBI chrNW_004955442:17,284,232...17,380,026
Ensembl chrNW_004955442:17,284,232...17,380,020 		JBrowse link
G Mapk15 mitogen-activated protein kinase 15 disease_progression ISO protein:decreased expression:tumor (human) RGD PMID:12917323 RGD:2304230 NCBI chrNW_004955454:2,413,393...2,420,703
Ensembl chrNW_004955454:2,413,822...2,419,276 		JBrowse link
G Mapt microtubule associated protein tau disease_progression ISO RGD PMID:18668363 RGD:8158093 NCBI chrNW_004955478:10,222,439...10,271,439
Ensembl chrNW_004955478:10,225,823...10,271,442 		JBrowse link
G Mcph1 microcephalin 1 severity ISO DNA:silent mutation, missense mutation:cds:p.S742, p.A761V (rs2912010, rs1057090) (human) RGD PMID:23296058 RGD:9589038 NCBI chrNW_004955403:54,143,454...54,273,201 JBrowse link
G Mdm2 MDM2 proto-oncogene ISO protein:increased expression:breast tumor (rat) RGD PMID:15844214 RGD:2293626 NCBI chrNW_004955458:15,264,028...15,287,290
Ensembl chrNW_004955458:15,263,739...15,286,808 		JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase ISO OMIM:114480 MouseDO NCBI chrNW_004955432:22,440,671...22,519,592
Ensembl chrNW_004955432:22,440,637...22,517,647 		JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase susceptibility
severity		 ISO DNA:polymorphisms:cds:p.L84F, p.I143V (human)
protein:decreased expression:tumor (human)		 RGD PMID:15741301 PMID:16014702 RGD:2317675 RGD:2317691 NCBI chrNW_004955477:7,103,035...7,375,073
Ensembl chrNW_004955477:7,102,977...7,376,530 		JBrowse link
G Mier3 MIER family member 3 exacerbates
disease_progression		 ISO RGD PMID:34242623 RGD:407571690 NCBI chrNW_004955446:10,962,336...10,992,645
Ensembl chrNW_004955446:10,961,436...10,992,971 		JBrowse link
G Mki67 marker of proliferation Ki-67 disease_progression ISO RGD PMID:21880954 PMID:22004841 RGD:6483516 RGD:6483528 NCBI chrNW_004955477:5,847,288...5,875,970 JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:8809606 PMID:9506527 PMID:9718327 PMID:10446963 PMID:10713887 More... NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526 		JBrowse link
G Mlh3 mutL homolog 3 ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955523:515,409...547,257
Ensembl chrNW_004955523:518,565...546,410 		JBrowse link
G Mmp8 matrix metallopeptidase 8 disease_progression ISO protein:increased expression:plasma:levels higher in patients with moderate lymph node involvement relative to controls and patients with no involvement (p=0.001)
DNA:SNP:promoter:minor (T) allele of rs11225395 associated with reduced lymph node metastasis, reduced relapse and greater disease-free survival (p=0.02)		 RGD PMID:17974962 PMID:18366705 RGD:2298552 RGD:2298553 NCBI chrNW_004955412:5,928,997...5,939,012
Ensembl chrNW_004955412:5,928,997...5,939,012 		JBrowse link
G Msh2 mutS homolog 2 susceptibility ISO DNA:polymorphism:cds:p.G322D
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant tumor of breast		 RGD
ClinVar		 PMID:8613431 PMID:8700523 PMID:9259192 PMID:9718327 PMID:10080150 More... RGD:2293512 NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698 		JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:2968408 PMID:10508506 PMID:10537275 PMID:11153917 PMID:11586295 More... NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227 		JBrowse link
G Muc1 mucin 1, cell surface associated ISO RGD PMID:8869094 RGD:7349378 NCBI chrNW_004955545:1,657,728...1,662,112 JBrowse link
G Mutyh mutY DNA glycosylase ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:16557584 PMID:21195604 PMID:25741868 PMID:26467025 PMID:26900293 More... NCBI chrNW_004955464:12,927,669...12,936,894
Ensembl chrNW_004955464:12,933,497...12,938,468 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor severity ISO OMIM:114480
DNA:amplification:exon (human)
protein:increased expression:mammary gland (rat)		 MouseDO
RGD		 PMID:10706127 PMID:22614519 RGD:7207838 RGD:7241002 NCBI chrNW_004955461:2,714,022...2,718,872
Ensembl chrNW_004955461:2,714,022...2,718,982 		JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor exacerbates ISO RNA:increased expression:breast (human) RGD PMID:26596839 RGD:150524333 NCBI chrNW_004955427:25,553,589...25,557,654
Ensembl chrNW_004955427:25,553,589...25,559,138 		JBrowse link
G Nbn nibrin susceptibility
disease_progression		 ISO DNA:SNP
ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
protein:decreased expression:breast
DNA:missense mutation:exon:p.I171V		 RGD
ClinVar		 PMID:9590180 PMID:9590181 PMID:9620777 PMID:10398434 PMID:10799436 More... RGD:2298991 RGD:2298992 RGD:2298993 NCBI chrNW_004955417:6,840,916...6,880,479
Ensembl chrNW_004955417:6,839,312...6,880,133 		JBrowse link
G Ncoa3 nuclear receptor coactivator 3 ISO RGD PMID:20051871 RGD:5688283 NCBI chrNW_004955445:10,020,916...10,085,318
Ensembl chrNW_004955445:10,024,308...10,052,472 		JBrowse link
G Ncoa6 nuclear receptor coactivator 6 ISO DNA:amplification:cds (human) RGD PMID:10567404 RGD:9590137 NCBI chrNW_004955422:26,564,535...26,639,516
Ensembl chrNW_004955422:26,564,037...26,632,675 		JBrowse link
G Ncor2 nuclear receptor corepressor 2 disease_progression ISO RGD PMID:19904269 RGD:2314971 NCBI chrNW_004955482:4,927,482...5,031,848
Ensembl chrNW_004955482:4,942,221...5,031,904 		JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor ISO ClinVar Annotator: match by term: Malignant breast neoplasm ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955455:3,862,804...3,950,669
Ensembl chrNW_004955455:3,862,347...3,951,891 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 treatment ISO DNA:SNPs, haplotype: :multiple RGD PMID:28797847 RGD:13506729 NCBI chrNW_004955496:5,842,734...5,950,995
Ensembl chrNW_004955496:5,842,600...5,927,885 		JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 susceptibility ISO DNA:insertion: : 3020_3021insC (human) RGD PMID:16267612 RGD:5131514 NCBI chrNW_004955433:8,746,213...8,780,119
Ensembl chrNW_004955433:8,746,004...8,782,710 		JBrowse link
G Nos3 nitric oxide synthase 3 susceptibility
no_association
disease_progression		 ISO DNA:polymorphism:promoter:-786T>C (human)
DNA:polymorphism:exon:p.E298D (human)
DNA:polymorphisms		 RGD PMID:16807677 PMID:17063466 PMID:17891484 RGD:2292068 RGD:2292074 RGD:2292075 NCBI chrNW_004955491:5,438,228...5,457,308
Ensembl chrNW_004955491:5,438,010...5,460,814 		JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 ISO ClinVar Annotator: match by term: Breast cancer, post-chemotherapy poor survival in ClinVar PMID:1737339 PMID:6933553 PMID:9000600 PMID:9230185 PMID:9328142 More... NCBI chrNW_004955484:7,012,373...7,028,182
Ensembl chrNW_004955484:7,012,506...7,027,604 		JBrowse link
G Nqo2 N-ribosyldihydronicotinamide:quinone dehydrogenase 2 susceptibility ISO OMIM NCBI chrNW_004955465:10,186,928...10,200,098
Ensembl chrNW_004955465:10,186,928...10,200,237 		JBrowse link
G Nuf2 NUF2 component of NDC80 kinetochore complex disease_progression ISO RGD PMID:31140425 PMID:31198978 RGD:28867230 RGD:28867231 NCBI chrNW_004955462:13,082,874...13,142,709
Ensembl chrNW_004955462:13,082,047...13,142,944 		JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase no_association
susceptibility
disease_progression		 ISO DNA:transition:intron:IVS1+22G>A (human)
DNA:SNPs:5' utr:c.-23A>G, c.-45G>A, c.-63G>C, (human)
DNA:SNP: :p.S326C (human)
DNA:missense mutation: :p.S326C (rs1052133) (human)
DNA:SNPs: :rs2072668, p.S326C (human)
DNA:hypermethylation:promoter
DNA:SNPs:5' utr:c.-18G>T, c.-53G>C (human)
DNA:polymorphisms: :p.R229Q (human)
DNA:polymorphisms: :p.S326C, 7143A>G (human)
DNA:polymorphism: :11657A>G (human)
protein:increased expression:breast		 RGD PMID:11536371 PMID:16492928 PMID:16614128 PMID:20183911 PMID:21153698 More... RGD:8657139 RGD:8657140 RGD:8657149 RGD:8657157 RGD:8657368 RGD:8657370 RGD:8657371 RGD:8657373 NCBI chrNW_004955561:1,277,362...1,282,949
Ensembl chrNW_004955561:1,277,365...1,282,793 		JBrowse link
G Pah phenylalanine hydroxylase ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:17502162 PMID:21890392 PMID:22526846 PMID:23357515 PMID:23856132 More... NCBI chrNW_004955405:37,848,486...37,909,163
Ensembl chrNW_004955405:37,846,354...37,909,457 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 ISO mRNA:increased expression:breast
DNA:amplification		 RGD PMID:16705121 PMID:17486065 PMID:28055013 RGD:156430322 RGD:2299165 RGD:2299167 NCBI chrNW_004955414:14,365,325...14,447,470
Ensembl chrNW_004955414:14,365,157...14,450,611 		JBrowse link
G Palb2 partner and localizer of BRCA2 ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:100849 PMID:9536098 PMID:16199547 PMID:16793542 PMID:17200668 More... NCBI chrNW_004955493:2,149,053...2,175,482
Ensembl chrNW_004955493:2,147,862...2,175,781 		JBrowse link
G Pdgfa platelet derived growth factor subunit A ISO mRNA:increased expression:breast RGD PMID:8619189 RGD:2292155 NCBI chrNW_004955460:8,328,400...8,346,755
Ensembl chrNW_004955460:8,326,891...8,346,550 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta ISO protein:increased expression:breast RGD PMID:17390053 RGD:2292174 NCBI chrNW_004955415:4,365,848...4,403,317
Ensembl chrNW_004955415:4,365,743...4,403,587 		JBrowse link
G Pgf placental growth factor disease_progression ISO RGD PMID:22270936 RGD:6483604 NCBI chrNW_004955523:616,196...627,055
Ensembl chrNW_004955523:616,154...627,713 		JBrowse link
G Phb1 prohibitin 1 no_association
susceptibility		 ISO DNA:polymorphism:3' utr:1703C>T
ClinVar Annotator: match by term: Breast cancer, susceptibility to		 RGD
ClinVar
OMIM		 PMID:8809404 PMID:11377649 PMID:14652295 RGD:2292402 NCBI chrNW_004955451:12,110,290...12,119,870
Ensembl chrNW_004955451:12,110,290...12,120,124 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant tumor of breast OMIM
ClinVar		 PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chrNW_004955420:8,355,415...8,427,024
Ensembl chrNW_004955420:8,356,353...8,427,024 		JBrowse link
G Plau plasminogen activator, urokinase treatment ISO protein:increased expression:nipple, discharge (human) RGD PMID:19500378 PMID:22296682 RGD:7241082 RGD:7241801 NCBI chrNW_004955437:17,995,726...18,000,542
Ensembl chrNW_004955437:17,994,537...18,000,209 		JBrowse link
G Plcg1 phospholipase C gamma 1 ISO RGD PMID:9703922 RGD:2299874 NCBI chrNW_004955445:15,787,496...15,823,859
Ensembl chrNW_004955445:15,787,496...15,823,859 		JBrowse link
G Plpp4 phospholipid phosphatase 4 ISO mRNA:increased expression:breast RGD PMID:16818692 RGD:2314524 NCBI chrNW_004955551:1,328,652...1,458,714
Ensembl chrNW_004955551:1,328,652...1,459,077 		JBrowse link
G Pmepa1 prostate transmembrane protein, androgen induced 1 ISO mRNA:increased expression:breast RGD PMID:14639658 RGD:2315106 NCBI chrNW_004955445:1,837,084...1,847,214
Ensembl chrNW_004955445:1,837,062...1,847,214 		JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component ISO ClinVar Annotator: match by term: PMS1-related breast cancer ClinVar PMID:24728327 PMID:25741868 NCBI chrNW_004955403:9,021,488...9,100,442
Ensembl chrNW_004955403:9,022,078...9,100,442 		JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:3199258 PMID:9536098 PMID:10479499 PMID:10480359 PMID:15077197 More... NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:23376243 PMID:24033266 PMID:24123366 PMID:25637381 PMID:25741868 More... NCBI chrNW_004955559:712,375...730,551
Ensembl chrNW_004955559:712,321...725,661 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:21701589 PMID:23263490 PMID:24033266 PMID:25741868 PMID:26251183 More... NCBI chrNW_004955482:373,467...418,000
Ensembl chrNW_004955482:373,555...417,266 		JBrowse link
G Polh DNA polymerase eta ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 PMID:30414346 PMID:33558524 NCBI chrNW_004955437:9,392,484...9,409,186
Ensembl chrNW_004955437:9,397,141...9,414,042 		JBrowse link
G Pon1 paraoxonase 1 susceptibility ISO DNA:polymorphism: :p.Q192R (human) RGD PMID:17428620 RGD:8661246 NCBI chrNW_004955432:11,893,473...11,923,035
Ensembl chrNW_004955432:11,893,473...11,923,339 		JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent 1D ISO OMIM NCBI chrNW_004955451:1,878,110...1,915,794
Ensembl chrNW_004955451:1,878,629...1,915,654 		JBrowse link
G Ppp2r2b protein phosphatase 2 regulatory subunit Bbeta disease_progression ISO DNA:SNP: :rs319217 (human) RGD PMID:20669227 RGD:5686296 NCBI chrNW_004955415:7,054,296...7,510,179
Ensembl chrNW_004955415:7,090,671...7,511,995 		JBrowse link
G Prame PRAME nuclear receptor transcriptional regulator ISO mRNA:increased expression:breast (human) RGD PMID:17624586 RGD:11535056 NCBI chrNW_004955455:6,921,420...6,930,453
Ensembl chrNW_004955455:6,921,052...6,930,537 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ISO DNA:SNP: :rs10074991 (human) RGD PMID:22562547 RGD:6484541 NCBI chrNW_004955426:25,079,718...25,102,090
Ensembl chrNW_004955426:25,079,718...25,102,090 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955454:7,733,697...7,890,896
Ensembl chrNW_004955454:7,733,978...7,890,867 		JBrowse link
G Psen2 presenilin 2 susceptibility ISO protein:amino acid substitution:R62H, R71W RGD PMID:16474849 RGD:2302525 NCBI chrNW_004955406:5,727,367...5,748,798
Ensembl chrNW_004955406:5,727,367...5,752,234 		JBrowse link
G Pten phosphatase and tensin homolog disease_progression ISO protein:decreased expression:breast
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 RGD
ClinVar		 PMID:9467011 PMID:9619835 PMID:9788441 PMID:11918710 PMID:12055674 More... RGD:2292514 NCBI chrNW_004955425:5,007,811...5,091,829
Ensembl chrNW_004955425:5,014,147...5,091,829 		JBrowse link
G Ptges3 prostaglandin E synthase 3 ISO protein:increased expression:breast tumor cell, cytoplasm (human) RGD PMID:20847343 RGD:5688064 NCBI chrNW_004955458:4,203,075...4,209,967
Ensembl chrNW_004955458:4,203,076...4,209,910 		JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 ISO protein:increased expression:breast RGD PMID:9521170 RGD:2300213 NCBI chrNW_004955419:5,678,750...5,699,305
Ensembl chrNW_004955419:5,678,694...5,699,305 		JBrowse link
G Ptk2b protein tyrosine kinase 2 beta ISO DNA:deletion RGD PMID:16457699 RGD:2292558 NCBI chrNW_004955403:49,856,056...49,970,800
Ensembl chrNW_004955403:49,855,541...49,973,225 		JBrowse link
G Ptpn13 protein tyrosine phosphatase non-receptor type 13 susceptibility ISO DNA:SNP: :rs989902(human) RGD PMID:24338422 RGD:152599188 NCBI chrNW_004955474:2,988,109...3,140,520
Ensembl chrNW_004955474:2,988,639...3,140,513 		JBrowse link
G Rac1 Rac family small GTPase 1 exacerbates ISO protein:increased expression:breast (human) RGD PMID:22345078 PMID:25557791 RGD:153323321 RGD:155230815 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351 		JBrowse link
G Rad50 RAD50 double strand break repair protein ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:23555315 PMID:24894818 PMID:25452441 PMID:25741868 PMID:26467025 More... NCBI chrNW_004955408:3,953,801...4,035,494
Ensembl chrNW_004955408:3,953,800...4,035,494 		JBrowse link
G Rad51 RAD51 recombinase resistance
susceptibility		 ISO DNA:polymorphism: :135G>C
DNA:deletion, loss of heterozygosity
DNA:repeat
DNA:SNPs		 RGD
OMIM		 PMID:16624550 PMID:17180310 PMID:17301259 PMID:17999359 PMID:18429825 RGD:2292632 RGD:2292634 RGD:2292636 RGD:2292637 RGD:2298722 NCBI chrNW_004955416:7,566,715...7,590,628
Ensembl chrNW_004955416:7,566,686...7,590,628 		JBrowse link
G Rad51c RAD51 paralog C ISO ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:9536098 PMID:17576681 PMID:18203022 PMID:20400963 PMID:20400964 More... NCBI chrNW_004955451:4,053,195...4,178,226
Ensembl chrNW_004955451:4,145,226...4,178,487 		JBrowse link
G Rad51d RAD51 paralog D ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, protection against | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:10749867 PMID:14704354 PMID:15170666 PMID:16199547 PMID:16717288 More... NCBI chrNW_004955481:9,795,102...9,810,426
Ensembl chrNW_004955481:9,795,102...9,810,426 		JBrowse link
G Rad54l RAD54 like ISO ClinVar Annotator: match by term: Malignant tumor of breast | ClinVar Annotator: match by term: RAD54L-related condition OMIM
ClinVar		 PMID:25741868 NCBI chrNW_004955464:11,996,512...12,033,525
Ensembl chrNW_004955464:11,996,512...12,033,490 		JBrowse link
G Rassf1 Ras association domain family member 1 susceptibility ISO DNA:hypermethylation
DNA, mRNA, protein:hypermethylation, decreased expression:promoter, breast		 RGD PMID:18425370 PMID:18483325 RGD:2299868 RGD:2299869 NCBI chrNW_004955532:2,132,892...2,142,106
Ensembl chrNW_004955532:2,132,822...2,142,106 		JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 ISO OMIM NCBI chrNW_004955454:12,201,566...12,257,383
Ensembl chrNW_004955454:12,200,750...12,257,389 		JBrowse link
G Recql4 RecQ like helicase 4 ISO ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955454:3,136,097...3,142,525
Ensembl chrNW_004955454:3,136,216...3,142,422 		JBrowse link
G Rel REL proto-oncogene, NF-kB subunit ISO protein:increased expression, altered localization:tumor:increased protein levels and nuclear translocation vs adjacent normal breast tissue RGD PMID:10713699 RGD:2300275 NCBI chrNW_004955424:22,909,035...22,939,651
Ensembl chrNW_004955424:22,911,541...22,939,651 		JBrowse link
G Relb RELB proto-oncogene, NF-kB subunit ISO protein:decreased localization:T cell, nucleus
protein:increased expression:breast		 RGD PMID:9724088 PMID:21640702 RGD:2298697 RGD:7777150 NCBI chrNW_004955555:2,060,533...2,086,229
Ensembl chrNW_004955555:2,060,533...2,086,229 		JBrowse link
G Rerg RAS like estrogen regulated growth inhibitor severity ISO mRNA:increased expression:breast (human) RGD PMID:11533059 RGD:1304529 NCBI chrNW_004955413:11,825,235...11,940,390
Ensembl chrNW_004955413:11,825,235...11,940,804 		JBrowse link
G Ret ret proto-oncogene ISO ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:7647787 PMID:7881414 PMID:9727738 PMID:9760196 PMID:10646792 More... NCBI chrNW_004955546:1,221,995...1,252,147
Ensembl chrNW_004955546:1,221,995...1,253,946 		JBrowse link
G Rhoa ras homolog family member A severity
disease_progression		 ISO protein:increased expression:breast RGD PMID:12237774 PMID:18575772 RGD:2298866 RGD:2298874 NCBI chrNW_004955532:1,300,821...1,347,453
Ensembl chrNW_004955532:1,300,462...1,347,451 		JBrowse link
G Rhob ras homolog family member B severity ISO protein:increased expression:breast RGD PMID:12237774 RGD:2298874 NCBI chrNW_004955469:2,964,968...2,966,998
Ensembl chrNW_004955469:2,965,041...2,965,631 		JBrowse link
G Rhoc ras homolog family member C severity ISO protein:increased expression:breast RGD PMID:12237774 RGD:2298874 NCBI chrNW_004955435:16,115,095...16,117,736
Ensembl chrNW_004955435:16,115,095...16,117,869 		JBrowse link
G Rnasel ribonuclease L no_association ISO DNA:substitution:G1385A RGD PMID:15330212 RGD:2291997 NCBI chrNW_004955406:21,413,950...21,424,860
Ensembl chrNW_004955406:21,411,980...21,425,052 		JBrowse link
G Rnf20 ring finger protein 20 ISO DNA:hypermethylation:promoter (human) RGD PMID:18832071 RGD:9831404 NCBI chrNW_004955419:24,273,714...24,299,454
Ensembl chrNW_004955419:24,273,714...24,299,460 		JBrowse link
G Runx3 RUNX family transcription factor 3 ISO DNA:promoter:hypermethylation protein:mislocalization RGD PMID:16818622 RGD:2302554 NCBI chrNW_004955452:4,580,444...4,606,820
Ensembl chrNW_004955452:4,579,331...4,636,884 		JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:14985401 PMID:16322339 PMID:16912137 PMID:17102082 PMID:17102083 More... NCBI chrNW_004955527:1,769,280...1,792,496
Ensembl chrNW_004955527:1,768,940...1,792,361 		JBrowse link
G Sdhc succinate dehydrogenase complex subunit C ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:23175444 PMID:24033266 PMID:24466223 PMID:25741868 PMID:26467025 More... NCBI chrNW_004955468:13,050,359...13,083,932
Ensembl chrNW_004955468:13,049,848...13,083,156 		JBrowse link
G Serpine1 serpin family E member 1 ISO protein:increased expression:breast, tumor (human) RGD PMID:15448007 RGD:8547748 NCBI chrNW_004955456:16,147,523...16,157,040
Ensembl chrNW_004955456:16,145,944...16,157,142 		JBrowse link
G Setd5 SET domain containing 5 ISO RGD PMID:35063407 RGD:155804257 NCBI chrNW_004955561:968,814...1,091,687
Ensembl chrNW_004955561:968,814...1,042,691 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 resistance ISO DNA:SNP:CDS:rs1979276, T allele associated with 0.56x reduction in risk RGD PMID:17896178 RGD:2300321 NCBI chrNW_004955478:10,972,791...11,001,535
Ensembl chrNW_004955478:10,978,139...11,001,202 		JBrowse link
G Six1 SIX homeobox 1 severity ISO mRNA:increased expression:breast epithelium (human) RGD PMID:9770533 RGD:11561960 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069 		JBrowse link
G Skp2 S-phase kinase associated protein 2 ISO protein:increased expression:breast RGD PMID:19350629 RGD:2315035 NCBI chrNW_004955426:20,972,663...20,999,769
Ensembl chrNW_004955426:20,972,663...20,999,769 		JBrowse link
G Slc22a18 solute carrier family 22 member 18 ISO OMIM NCBI chrNW_004955422:14,590,588...14,615,898
Ensembl chrNW_004955422:14,592,250...14,616,890 		JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:22401137 PMID:22911665 PMID:23211700 PMID:23840564 PMID:25741868 More... NCBI chrNW_004955442:13,765,660...13,792,106
Ensembl chrNW_004955442:13,770,340...13,791,314 		JBrowse link
G Smad4 SMAD family member 4 ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:26467025 PMID:28492532 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955495:2,021,671...2,105,155
Ensembl chrNW_004955495:2,021,566...2,105,397 		JBrowse link
G Sncg synuclein gamma disease_progression ISO protein:increased expression:breast RGD PMID:16821081 RGD:6478795 NCBI chrNW_004955510:5,958,276...5,961,719
Ensembl chrNW_004955510:5,958,276...5,961,719 		JBrowse link
G Snw1 SNW domain containing 1 susceptibility ISO DNA:snp:intron: T>A (human) (rs1477261) RGD PMID:19377877 RGD:2683526 NCBI chrNW_004955438:1,561,562...1,601,492
Ensembl chrNW_004955438:1,561,568...1,601,492 		JBrowse link
G Sod2 superoxide dismutase 2 ISO RGD PMID:15883815 RGD:1581240 NCBI chrNW_004955439:21,209,101...21,223,538
Ensembl chrNW_004955439:21,209,101...21,224,163 		JBrowse link
G Sox2 SRY-box transcription factor 2 treatment
disease_progression		 ISO RGD PMID:21822303 PMID:22561374 PMID:22832207 RGD:8661656 RGD:8661657 RGD:8661663 NCBI chrNW_004955420:10,671,888...10,674,080
Ensembl chrNW_004955420:10,671,978...10,672,934 		JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 severity ISO mRNA:decreased expression:breast (human) RGD PMID:14734471 RGD:1581315 NCBI chrNW_004955416:7,715,536...7,728,759
Ensembl chrNW_004955416:7,715,536...7,729,158 		JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 severity ISO mRNA:increased expression:breast (human) RGD PMID:17651715 RGD:11039450 NCBI chrNW_004955466:612,221...617,087
Ensembl chrNW_004955466:612,221...617,753 		JBrowse link
G Stat1 signal transducer and activator of transcription 1 disease_progression ISO protein:increased expression:breast
OMIM:114480		 RGD
MouseDO		 PMID:17868458 RGD:2291892 NCBI chrNW_004955403:8,156,660...8,192,018
Ensembl chrNW_004955403:8,156,660...8,194,762 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 susceptibility
treatment
disease_progression		 ISO DNA:snp RGD PMID:15374974 PMID:17639043 PMID:21740845 PMID:22374428 RGD:2291912 RGD:8694286 RGD:8694288 RGD:8694291 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687 		JBrowse link
G Stk11 serine/threonine kinase 11 ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:9536098 PMID:10429655 PMID:12533684 PMID:15800014 PMID:16287113 More... NCBI chrNW_004955495:6,678,195...6,699,408
Ensembl chrNW_004955495:6,678,195...6,699,058 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 susceptibility ISO DNA:SNP: :rs7003146(human) RGD PMID:24338422 RGD:152599188 NCBI chrNW_004955431:18,020,309...18,207,926
Ensembl chrNW_004955431:18,020,409...18,209,134 		JBrowse link
G Terf1 telomeric repeat binding factor 1 ISO mRNA:decreased expression:breast tumor (human) RGD PMID:18720522 RGD:2317222 NCBI chrNW_004955444:7,103,282...7,149,450
Ensembl chrNW_004955444:7,103,552...7,150,323 		JBrowse link
G Tert telomerase reverse transcriptase ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:20301779 PMID:24033266 PMID:25741868 PMID:28492532 NCBI chrNW_004955504:649,248...669,796
Ensembl chrNW_004955504:651,779...670,589 		JBrowse link
G Tes testin LIM domain protein disease_progression
severity		 ISO RGD PMID:22957844 PMID:23715752 RGD:597621668 RGD:597621682 NCBI chrNW_004955432:21,992,708...22,035,441
Ensembl chrNW_004955432:22,014,444...22,035,636 		JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO mRNA:increased expression: Blood, peripheral blood mononuclear cells (human) RGD PMID:30713804 RGD:150429690 NCBI chrNW_004955496:3,885,684...3,963,056
Ensembl chrNW_004955496:3,885,035...3,926,106 		JBrowse link
G Tfrc transferrin receptor severity ISO mRNA:increased expression:breast
protein:increased expression:breast		 RGD PMID:11299801 PMID:14965443 RGD:2292018 RGD:2292021 NCBI chrNW_004955420:12,348,392...12,372,714
Ensembl chrNW_004955420:12,348,821...12,372,691 		JBrowse link
G Tgfb1 transforming growth factor beta 1 susceptibility
severity
no_association
disease_progression
treatment		 ISO DNA:SNP:promoter:-509 C>T (human)
DNA:SNP: :rs1982073 (human)
DNA:polymorphism: :p.L10P (human)
protein:increased expression:plasma
DNA:polymorphism: :29T>C (human)		 RGD PMID:2021547 PMID:7543740 PMID:17848193 PMID:18075785 PMID:20157775 More... RGD:7394794 RGD:7394824 RGD:7394832 RGD:7394846 RGD:7394850 RGD:7394853 RGD:7394854 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Thra thyroid hormone receptor alpha ISO RGD PMID:12082618 RGD:2315096 NCBI chrNW_004955451:14,731,746...14,743,545
Ensembl chrNW_004955451:14,731,746...14,744,367 		JBrowse link
G Thrb thyroid hormone receptor beta ISO RGD PMID:12082618 PMID:20082849 RGD:2315096 RGD:2315977 NCBI chrNW_004955430:15,992,146...16,322,696
Ensembl chrNW_004955430:15,992,146...16,323,238 		JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 disease_progression ISO protein:increased expression:serum
mRNA, protein:increased expression:breast		 RGD PMID:17114213 PMID:17478562 PMID:18172859 RGD:2290343 RGD:2290345 RGD:2290348 NCBI chrNW_004955516:507,113...511,360
Ensembl chrNW_004955516:505,789...512,118 		JBrowse link
G Timp3 TIMP metallopeptidase inhibitor 3 disease_progression ISO RGD PMID:16256342 RGD:2290416 NCBI chrNW_004955405:41,613,976...41,655,813
Ensembl chrNW_004955405:41,613,966...41,655,813 		JBrowse link
G Tk1 thymidine kinase 1 ISO protein:increased expression:serum (human) RGD PMID:10883887 RGD:2317242 NCBI chrNW_004955506:4,379,830...4,390,729
Ensembl chrNW_004955506:4,379,830...4,394,713 		JBrowse link
G Tlr2 toll like receptor 2 susceptibility ISO DNA:deletion:promotor:-196_-174del(human) RGD PMID:22560646 RGD:7794753 NCBI chrNW_004955471:8,011,710...8,019,063
Ensembl chrNW_004955471:8,014,910...8,017,258 		JBrowse link
G Tlr4 toll like receptor 4 susceptibility
no_association		 ISO DNA:polymorphism:exon:p.N299G(human)
DNA:SNP: :c.896A>G(human)
DNA:polymorphism: :3725G>C(human)		 RGD PMID:19810822 PMID:22560646 PMID:23510418 RGD:7777160 RGD:7794746 RGD:7794753 NCBI chrNW_004955419:10,190,937...10,201,896
Ensembl chrNW_004955419:10,191,120...10,202,135 		JBrowse link
G Tlr9 toll like receptor 9 ISO protein:increased expression:breast, epithelial cell (human) RGD PMID:18922969 RGD:7246913 NCBI chrNW_004955532:3,828,645...3,832,699
Ensembl chrNW_004955532:3,828,775...3,832,582 		JBrowse link
G Tnf tumor necrosis factor no_association
susceptibility		 ISO DNA:SNPs: :multiple
protein:increased expression:serum
DNA:polymorphism, haplotype:promoter:-308G>A (human)
DNA:SNP: :rs361525 (human)
DNA:SNPs:promoter:multiple		 RGD PMID:11841482 PMID:17216494 PMID:18409070 PMID:19967414 RGD:2315111 RGD:8548779 RGD:8548786 RGD:8548791 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700 		JBrowse link
G Tnfaip3 TNF alpha induced protein 3 ameliorates ISO associated with Neoplasm Metastasis; human cells in mouse model RGD PMID:28892081 RGD:151347436 NCBI chrNW_004955436:21,566,591...21,581,551
Ensembl chrNW_004955436:21,566,423...21,578,469 		JBrowse link
G Tp53 tumor protein p53 ISO ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar
OMIM		 PMID:1394133 PMID:1537617 PMID:1562462 PMID:1565144 PMID:1631137 More... NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928 		JBrowse link
G Tp73 tumor protein p73 no_association
disease_progression		 ISO DNA:deletion:intron:IVS1-489_-417del (human)
DNA:mutations
DNA:polymorphism
DNA, mRNA:loss of heterozygosity, decreased expression:breast		 RGD PMID:10634515 PMID:11103943 PMID:11139314 PMID:14732927 PMID:16950799 RGD:151347588 RGD:2290584 RGD:2291830 RGD:2291831 RGD:2291835 NCBI chrNW_004955486:7,914,608...7,961,992
Ensembl chrNW_004955486:7,914,440...7,952,982 		JBrowse link
G Tsc1 TSC complex subunit 1 disease_progression ISO mRNA:decreased expression:breast
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 RGD
ClinVar		 PMID:9328481 PMID:9803264 PMID:9863590 PMID:9924605 PMID:10353610 More... RGD:11568707 NCBI chrNW_004955513:2,197,037...2,244,992
Ensembl chrNW_004955513:2,197,037...2,244,992 		JBrowse link
G Tsc2 TSC complex subunit 2 disease_progression ISO mRNA, protein:decreased expression:breast RGD PMID:15951164 RGD:11568707 NCBI chrNW_004955442:15,178,356...15,216,978
Ensembl chrNW_004955442:15,178,487...15,216,362 		JBrowse link
G Tsg101 tumor susceptibility 101 disease_progression
severity		 ISO protein:increased expression:breast
DNA:deletion: :154_1054del
mRNA:alternative forms:breast		 RGD PMID:10618725 PMID:10930114 PMID:17369844 RGD:2291847 RGD:2291848 RGD:2291849 NCBI chrNW_004955414:33,154,812...33,193,769
Ensembl chrNW_004955414:33,154,812...33,193,769 		JBrowse link
G Tshr thyroid stimulating hormone receptor ISO ClinVar Annotator: match by term: Malignant breast neoplasm ClinVar PMID:19240155 PMID:19820021 PMID:22049173 PMID:25557138 PMID:25741868 More... NCBI chrNW_004955438:4,601,765...4,758,922
Ensembl chrNW_004955438:4,614,584...4,761,582 		JBrowse link
G Tut4 terminal uridylyl transferase 4 severity ISO in conjunction with E2f1 expression;mRNA:increased expression:breast (human RGD PMID:21453498 RGD:11530014 NCBI chrNW_004955464:6,610,350...6,734,606
Ensembl chrNW_004955464:6,646,245...6,734,066 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 disease_progression ISO RGD PMID:27524420 RGD:151665821 NCBI chrNW_004955410:22,003,981...22,005,483 JBrowse link
G Tyr tyrosinase ISO ClinVar Annotator: match by term: Malignant breast neoplasm ClinVar PMID:666627 PMID:1429711 PMID:1820207 PMID:7704033 PMID:9158138 More... NCBI chrNW_004955414:4,244,035...4,314,001
Ensembl chrNW_004955414:4,244,035...4,314,001 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 exacerbates ISO human gene in a mouse cell line and mouse model RGD PMID:28330927 RGD:151665194 NCBI chrNW_004955417:26,997,572...27,085,511
Ensembl chrNW_004955417:26,998,513...27,083,005 		JBrowse link
G Urod uroporphyrinogen decarboxylase ISO protein:increased activity:tumor:in tissue explant cultures of breast cancers and corresponding normal breast tissue RGD PMID:2276414 RGD:2301374 NCBI chrNW_004955464:13,226,271...13,228,908
Ensembl chrNW_004955464:13,221,551...13,229,253 		JBrowse link
G Vdr vitamin D receptor onset
no_association
disease_progression		 ISO DNA:repeat, SNP, haplotype:rs7975232 (human)
DNA:SNPs, haplotype: :rs731236, rs1544410, rs7975232 (human)
DNA:SNPs: :rs731236, rs1544410 (human)
DNA:SNP: :rs2228570 (human)
DNA:hypermethylation:promoter
mRNA:increased expression:breast
DNA:SNP, repeat: :rs1544410 (human)
DNA:polymorphisms, haplotype: :multiple
DNA:SNPs: :rs1544410 (human)
DNA:SNPs: :rs1989969, rs2228570, rs11568820 (human)		 RGD PMID:11461072 PMID:14749534 PMID:15328186 PMID:18419802 PMID:19124512 More... RGD:8157626 RGD:8157631 RGD:8157634 RGD:8157636 RGD:8158054 RGD:8158055 RGD:8158058 RGD:8158060 RGD:8158065 RGD:8158069 NCBI chrNW_004955500:6,745,725...6,798,052
Ensembl chrNW_004955500:6,745,678...6,798,048 		JBrowse link
G Wif1 WNT inhibitory factor 1 ISO DNA:hypermethylation:promoter RGD PMID:16501252 RGD:2291871 NCBI chrNW_004955458:11,755,147...11,834,047
Ensembl chrNW_004955458:11,754,120...11,834,047 		JBrowse link
G Wnt1 Wnt family member 1 ISO OMIM:114480 MouseDO NCBI chrNW_004955500:7,797,063...7,811,142
Ensembl chrNW_004955500:7,797,060...7,811,167 		JBrowse link
G Wnt2 Wnt family member 2 ISO mRNA:increased expression:breast RGD PMID:15736421 RGD:2291874 NCBI chrNW_004955432:22,988,208...23,024,530
Ensembl chrNW_004955432:22,984,170...23,027,705 		JBrowse link
G Wnt7b Wnt family member 7B ISO mRNA:decreased expression:tumor:decreased vs normal breast epithelium RGD PMID:15492823 RGD:2298699 NCBI chrNW_004955413:30,146,185...30,185,693
Ensembl chrNW_004955413:30,144,869...30,181,791 		JBrowse link
G Wnt9a Wnt family member 9A ISO mRNA:increased expression:tumor, cell line:up-regulated in 1/9 primary breast tumors and 2/3 breast cancer cell lines (T-47D, MCF-7) RGD PMID:11713592 RGD:2299944 NCBI chrNW_004955581:422,028...438,321
Ensembl chrNW_004955581:421,451...438,380 		JBrowse link
G Wrap53 WD repeat containing antisense to TP53 no_association ISO DNA:SNP: : rs2287499(human)
ClinVar Annotator: match by term: Malignant tumor of breast		 RGD
ClinVar		 PMID:25134915 RGD:21081531 NCBI chrNW_004955467:9,225,506...9,240,756 JBrowse link
G Wrn WRN RecQ like helicase ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:10069711 PMID:10220139 PMID:16786514 PMID:24728327 PMID:25741868 More... NCBI chrNW_004955463:7,495,243...7,633,532
Ensembl chrNW_004955463:7,525,100...7,633,596 		JBrowse link
G Wt1 WT1 transcription factor disease_progression ISO RGD PMID:19407365 RGD:2315543 NCBI chrNW_004955476:10,464,688...10,504,473
Ensembl chrNW_004955476:10,464,616...10,504,473 		JBrowse link
G Xiap X-linked inhibitor of apoptosis ISO protein:increased expression:breast RGD PMID:19563669 RGD:2315848 NCBI chrNW_004955473:10,823,795...10,878,256
Ensembl chrNW_004955473:10,827,435...10,840,604 		JBrowse link
G Xpo5 exportin 5 susceptibility ISO DNA:missense mutations:cds:p.S241N, p.M1115T (rs34324334, rs11544382) (human) RGD PMID:21552306 RGD:11041726 NCBI chrNW_004955437:9,351,045...9,392,396
Ensembl chrNW_004955437:9,351,045...9,392,396 		JBrowse link
G Xrcc3 X-ray repair cross complementing 3 ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to ClinVar
OMIM		 PMID:12023982 NCBI chrNW_004955538:2,499,297...2,511,898
Ensembl chrNW_004955538:2,501,607...2,509,778 		JBrowse link
G Zfhx3 zinc finger homeobox 3 exacerbates ISO mRNA:decreased expression:breast (human) RGD PMID:33217982 RGD:151361167 NCBI chrNW_004955484:5,470,203...5,746,325
Ensembl chrNW_004955484:5,474,769...5,789,707 		JBrowse link
G Zfp36 ZFP36 ring finger protein disease_progression ISO mRNA:decreased expression:breast (human) RGD PMID:32248342 RGD:153344515 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140 		JBrowse link
bilateral breast cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase ISO ClinVar Annotator: match by term: Bilateral breast carcinoma ClinVar PMID:19781682 PMID:25085752 PMID:25741868 PMID:26689913 PMID:26787654 More... NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545 		JBrowse link
G Brca1 BRCA1 DNA repair associated ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar PMID:9150151 PMID:11376024 PMID:16683254 PMID:19491284 PMID:20104584