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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:pulmonary alveolar proteinosis
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Accession:DOID:12120 term browser browse the term
Definition:A lung disease that is characterized by abnormal accumulation of surfactant occurs within the alveoli, interfering with gas exchange. (DO)
Synonyms:exact_synonym: Pulmonary Alveolar Proteinoses
 primary_id: MESH:D011649
 xref: ICD10CM:J84.01;   ICD9CM:516.0;   MIM:PS265120;   MONDO:0001437;   NCI:C85037;   ORDO:264675
For additional species annotation, visit the Alliance of Genome Resources.

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pulmonary alveolar proteinosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca3 ATP binding cassette subfamily A member 3 ISO OMIM:265120 | OMIM:300770 | OMIM:610913 | OMIM:610921 | OMIM:614370 MouseDO NCBI chrNW_004624824:85,369...144,053
Ensembl chrNW_004624824:84,430...144,062 		JBrowse link
G Csf2 colony stimulating factor 2 ISO OMIM:265120 | OMIM:300770 | OMIM:610913 | OMIM:610921 | OMIM:614370 RGD
MouseDO		 PMID:9763547 PMID:11179134 PMID:21478218 RGD:10449509 RGD:10449522 RGD:5131467 NCBI chrNW_004624733:40,039,127...40,041,294
Ensembl chrNW_004624733:40,039,414...40,041,294 		JBrowse link
G Csf2ra colony stimulating factor 2 receptor subunit alpha ISO CTD Direct Evidence: marker/mechanism
OMIM:265120 | OMIM:300770 | OMIM:610913 | OMIM:610921 | OMIM:614370		 CTD
MouseDO		 PMID:29484482 NCBI chrNW_004624834:616,180...628,794 JBrowse link
G Defb1 defensin beta 1 ISO protein:increased expression:respiratory system fluid/secretion RGD PMID:17000097 RGD:4892262 NCBI chrNW_004624861:4,710,687...4,718,867 JBrowse link
G Des desmin ISO ClinVar Annotator: match by term: Pulmonary alveolar proteinosis ClinVar PMID:24033266 PMID:24503780 PMID:25741868 PMID:26265630 PMID:26724190 More... NCBI chrNW_004624823:5,624,958...5,632,234
Ensembl chrNW_004624823:5,622,283...5,632,283 		JBrowse link
G Mars1 methionyl-tRNA synthetase 1 ISO ClinVar Annotator: match by term: Pulmonary alveolar proteinosis ClinVar PMID:25913036 NCBI chrNW_004624802:10,443,216...10,460,971
Ensembl chrNW_004624802:10,443,223...10,460,971 		JBrowse link
G Sftpb surfactant protein B ISO protein:increased expression:blood
protein:increased expression:lung
protein:altered processing:lung		 RGD PMID:7654386 PMID:12612307 PMID:16042774 RGD:4143392 RGD:4143411 RGD:4143454 NCBI chrNW_004624749:17,486,483...17,495,822
Ensembl chrNW_004624749:17,486,518...17,493,846 		JBrowse link
G Sftpc surfactant protein C ISO ClinVar Annotator: match by term: Pulmonary alveolar proteinosis ClinVar PMID:25741868 NCBI chrNW_004624758:17,742,439...17,744,664
Ensembl chrNW_004624758:17,742,415...17,744,655 		JBrowse link
G Sftpd surfactant protein D ISO associated with Acquired Immunodeficiency Syndrome;protein:increased expression:lung
protein:increased expression:blood, lung		 RGD PMID:16849999 PMID:19046553 RGD:4143461 RGD:4143497 NCBI chrNW_004624841:6,917,067...6,938,594
Ensembl chrNW_004624841:6,916,849...6,936,077 		JBrowse link
Congenital Deficiency of Pulmonary Surfactant Protein B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sftpb surfactant protein B ameliorates ISO ClinVar Annotator: match by term: Pulmonary surfactant protein B, deficiency of RGD
ClinVar		 PMID:7491219 PMID:9506635 PMID:9973546 PMID:10571948 PMID:24033266 More... RGD:151667445 NCBI chrNW_004624749:17,486,483...17,495,822
Ensembl chrNW_004624749:17,486,518...17,493,846 		JBrowse link
Pulmonary Surfactant Metabolism Dysfunction 1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca3 ATP binding cassette subfamily A member 3 ISO ClinVar Annotator: match by term: Surfactant metabolism dysfunction, pulmonary, 1 ClinVar PMID:25741868 NCBI chrNW_004624824:85,369...144,053
Ensembl chrNW_004624824:84,430...144,062 		JBrowse link
G Rab5b RAB5B, member RAS oncogene family ISO ClinVar Annotator: match by term: RAB5B-associated surfactant dysfunction disorder ClinVar PMID:25741868 PMID:35121658 NCBI chrNW_004624802:12,058,916...12,065,177
Ensembl chrNW_004624802:12,059,503...12,066,296 		JBrowse link
G Sftpb surfactant protein B ISO ClinVar Annotator: match by term: Surfactant metabolism dysfunction, pulmonary, 1 OMIM
ClinVar		 PMID:7491219 PMID:8163685 PMID:9506635 PMID:9682215 PMID:9973546 More... NCBI chrNW_004624749:17,486,483...17,495,822
Ensembl chrNW_004624749:17,486,518...17,493,846 		JBrowse link
G Sftpc surfactant protein C ISO ClinVar Annotator: match by term: Surfactant metabolism dysfunction, pulmonary, 1 ClinVar PMID:25741868 NCBI chrNW_004624758:17,742,439...17,744,664
Ensembl chrNW_004624758:17,742,415...17,744,655 		JBrowse link
Pulmonary Surfactant Metabolism Dysfunction 2 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp1 bone morphogenetic protein 1 ISO ClinVar Annotator: match by term: Surfactant metabolism dysfunction, pulmonary, 2 ClinVar PMID:24033266 PMID:25741868 PMID:28492532 NCBI chrNW_004624758:17,745,344...17,788,183
Ensembl chrNW_004624758:17,744,821...17,788,510 		JBrowse link
G Sftpc surfactant protein C ISO ClinVar Annotator: match by term: Surfactant metabolism dysfunction, pulmonary, 2 OMIM
ClinVar		 PMID:5942662 PMID:11207353 PMID:11893657 PMID:11991887 PMID:12538769 More... NCBI chrNW_004624758:17,742,439...17,744,664
Ensembl chrNW_004624758:17,742,415...17,744,655 		JBrowse link
G Ush2a usherin ISO ClinVar Annotator: match by term: PULMONARY ALVEOLAR PROTEINOSIS, CONGENITAL, 2 ClinVar PMID:10729113 PMID:10909849 PMID:19881469 PMID:20507924 PMID:24033266 More... NCBI chrNW_004624835:48,213...758,640
Ensembl chrNW_004624835:49,877...758,640 		JBrowse link
Pulmonary Surfactant Metabolism Dysfunction 3 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca3 ATP binding cassette subfamily A member 3 ISO ClinVar Annotator: match by term: ABCA3-related condition | ClinVar Annotator: match by term: Interstitial lung disease due to ABCA3 deficiency | ClinVar Annotator: match by term: Primary interstitial lung disease specific to childhood due to pulmonary surfactant protein anomalies OMIM
ClinVar		 PMID:7374344 PMID:15044640 PMID:15976379 PMID:16641205 PMID:16728712 More... NCBI chrNW_004624824:85,369...144,053
Ensembl chrNW_004624824:84,430...144,062 		JBrowse link
G F8 coagulation factor VIII ISO ClinVar Annotator: match by term: Interstitial lung disease due to ABCA3 deficiency ClinVar PMID:25741868 NCBI chrNW_004624963:252,943...424,718 JBrowse link
Pulmonary Surfactant Metabolism Dysfunction 4 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csf2ra colony stimulating factor 2 receptor subunit alpha ISO ClinVar Annotator: match by term: CSF2RA-related condition | ClinVar Annotator: match by term: Surfactant metabolism dysfunction, pulmonary, 4 OMIM
ClinVar		 PMID:9536098 PMID:16199547 PMID:17576681 PMID:18955567 PMID:18955570 More... NCBI chrNW_004624834:616,180...628,794 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 14229
    disease of anatomical entity 13931
      respiratory system disease 4529
        lower respiratory tract disease 2024
          lung disease 1985
            pulmonary alveolar proteinosis 13
              Acquired Pulmonary Alveolar Proteinosis 0
              Congenital Deficiency of Pulmonary Surfactant Protein B 1
              Congenital Pulmonary Alveolar Proteinosis + 8
paths to the root