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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:17-beta hydroxysteroid dehydrogenase 3 deficiency
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Accession:DOID:0112248 term browser browse the term
Definition:A pseudohermaphroditism characterized by undermasculinization in males including hypoplastic-to-normal internal genitalia with female external genitalia and the absence of a prostate, impaired testicular synthesis of testosterone resulting in insufficient formation of dihydrotestosterone during fetal development and resulting in pseudohermaphroditism in males that has_material_basis_in homozygous or compound heterozygous mutation of the HSD17B3 gene on chromosome 9q22. (DO)
Synonyms:exact_synonym: 17-Beta Hydroxysteroid Dehydrogenase III Deficiency;   17-Hydroxysteroid Dehydrogenase Deficiency;   17-Ketosteroid Reductase Deficiency Of Testis;   17-Ksr Deficiency;   17-alpha ketosteroid reductase deficiency of testis;   17-beta-hydroxysteroid dehydrogenase deficiency;   17-ketoreductase deficiency;   17-ketosteroidreductase deficiency;   46,XY disorder of sex development due to 17-beta-hydroxysteroid dehydrogenase 3 deficiency;   HSD17B3-RELATED CONDITION;   Male pseudohermaphroditism with gynecomastia;   neutral 17-beta-hydroxysteroid oxidoreductase deficiency
 narrow_synonym: PSEUDOHERMAPHRODITISM, MALE, WITH GYNECOMASTIA POLYCYSTIC OVARIAN DISEASE DUE TO 17-KETOSTEROID REDUCTASE DEFICIENCY
 related_synonym: TESTOSTERONE 17-BETA-DEHYDROGENASE DEFICIENCY
 alt_id: DOID:9005168
 xref: GARD:5659;   MESH:C537805;   MIM:264300;   MONDO:0009916;   NCI:C120203;   ORDO:752



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17-beta hydroxysteroid dehydrogenase 3 deficiency term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain ISO ClinVar Annotator: match by term: 17 alpha ketosteroid reductase deficiency of testis ClinVar PMID:25326637 PMID:25741868 PMID:28492532 NCBI chr 3:31,606,475...31,755,097
Ensembl chr 3:11,208,512...11,354,588
JBrowse link
G Hsd17b3 hydroxysteroid (17-beta) dehydrogenase 3 ISO
ISS
CTD Direct Evidence: marker/mechanism
OMIM:264300
ClinVar Annotator: match by term: HSD17B3-related condition | ClinVar Annotator: match by term: Testosterone 17-beta-dehydrogenase deficiency
OMIM
CTD
MouseDO
ClinVar
PMID:598011 PMID:2918056 PMID:3066852 PMID:8075637 PMID:8550739 More... NCBI chr17:1,032,958...1,064,283
Ensembl chr17:1,027,229...1,058,554
JBrowse link
G Smad4 SMAD family member 4 ISO ClinVar Annotator: match by term: Neutral 17 beta hydroxysteroid oxidoreductase deficiency ClinVar PMID:25326637 PMID:25741868 PMID:28492532 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:67,243,742...67,274,438
JBrowse link
D-bifunctional protein deficiency term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brat1 BRCA1-associated ATM activator 1 ISO ClinVar Annotator: match by term: DBP deficiency ClinVar PMID:16385454 PMID:22279524 PMID:23035047 PMID:28492532 NCBI chr12:19,043,004...19,065,686
Ensembl chr12:13,928,898...13,941,248
JBrowse link
G Glb1 galactosidase, beta 1 ISO ClinVar Annotator: match by term: D-bifunctional protein deficiency ClinVar PMID:10338095 PMID:15986423 PMID:16385454 PMID:16941474 PMID:17309651 More... NCBI chr 8:122,963,718...123,036,326
Ensembl chr 8:114,085,508...114,158,127
JBrowse link
G Hsd17b4 hydroxysteroid (17-beta) dehydrogenase 4 severity ISO
ISS
ClinVar Annotator: match by term: Bifunctional peroxisomal enzyme deficiency | ClinVar Annotator: match by term: DBP deficiency | ClinVar Annotator: match by term: PBFE DEFICIENCY
OMIM:261515
DNA:mutations:multiple (human)
ClinVar
MouseDO
OMIM
RGD
PMID:2868085 PMID:2882519 PMID:2921319 PMID:8279468 PMID:9345094 More... RGD:1599968, RGD:10411884 NCBI chr18:45,515,427...45,604,467
Ensembl chr18:43,328,824...43,417,952
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19140
    Nutritional and Metabolic Diseases 8545
      disease of metabolism 8545
        lipid metabolism disorder 1904
          steroid inherited metabolic disorder 65
            17-beta hydroxysteroid dehydrogenase 3 deficiency 6
              D-bifunctional protein deficiency 3
Path 2
Term Annotations click to browse term
  disease 19140
    disease of anatomical entity 18453
      nervous system disease 14363
        Neurologic Manifestations 10464
          sensory system disease 7381
            skin disease 4322
              breast disease 1559
                gynecomastia 13
                  17-beta hydroxysteroid dehydrogenase 3 deficiency 6
                    D-bifunctional protein deficiency 3
paths to the root