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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:gastrointestinal carcinoma
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Accession:DOID:0050922 term browser browse the term
Definition:A gastrointestinal system cancer that has_material_basis_in epithelial cells. (DO)
Synonyms:exact_synonym: digestive system carcinoma
 xref: EFO:1000218;   MONDO:0006181



show annotations for term's descendants           Sort by:
gastrointestinal carcinoma term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Gastrointestinal carcinoma ClinVar PMID:10617473 PMID:11053450 PMID:11298456 PMID:11390408 PMID:11461078 More... NCBI chr12:51,448,838...51,481,159
Ensembl chr12:45,788,827...45,821,286
JBrowse link
G Grb7 growth factor receptor bound protein 7 ISO mRNA:increased expression:stomach (human) RGD PMID:16849520 RGD:151347663 NCBI chr10:83,936,538...83,949,344
Ensembl chr10:83,444,004...83,453,052
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO associated with Helicobacter Infections;DNA:SNP: :c.802C>T (human) RGD PMID:20230816 RGD:5508759 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19142
    disease of cellular proliferation 7892
      cancer 5722
        cell type cancer 3784
          carcinoma 3274
            gastrointestinal carcinoma 3
              anal Paget's disease + 0
Path 2
Term Annotations click to browse term
  disease 19142
    disease of anatomical entity 18455
      gastrointestinal system disease 7191
        Digestive System Neoplasms 3850
          Gastrointestinal Neoplasms 3727
            gastrointestinal system cancer 2917
              gastrointestinal carcinoma 3
                anal Paget's disease + 0
paths to the root