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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:tonsil squamous cell carcinoma
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Accession:DOID:0050920 term browser browse the term
Definition:A tonsil cancer that has_material_basis_in squamous cells. (DO)
Synonyms:exact_synonym: tonsillar squamous cell carcinoma
 xref: EFO:1000597;   MONDO:0006470



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tonsil squamous cell carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr3 fibroblast growth factor receptor 3 severity ISO associated with human papillomavirus;protein:decreased expression:tumor cells (human) RGD PMID:30061236 RGD:36947883 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
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adenoid squamous cell carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1a HNF1 homeobox A ISO RGD PMID:10489374 RGD:150540314 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19060
    Stomatognathic Diseases 1361
      Pharyngeal Diseases 267
        Pharyngeal Neoplasms 183
          pharynx cancer 169
            pharynx squamous cell carcinoma 3
              tonsil squamous cell carcinoma 2
                adenoid squamous cell carcinoma 1
Path 2
Term Annotations click to browse term
  disease 19060
    Pathological Conditions, Signs and Symptoms 13534
      Signs and Symptoms 11087
        Neurologic Manifestations 10338
          sensory system disease 7247
            Otorhinolaryngologic Diseases 1789
              Pharyngeal Diseases 267
                Pharyngeal Neoplasms 183
                  pharynx cancer 169
                    oropharynx cancer 118
                      tonsil cancer 117
                        tonsil squamous cell carcinoma 2
                          adenoid squamous cell carcinoma 1
paths to the root